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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067240 ID=TCONS_00067240|Name=TCONS_00067240|organism=Clytia hemisphaerica|type=transcript|length=1454bp
TTTCAGcgataaaaaaagaacagaaaaacaagaaattatttaaaaaaaca
gcTACAATGGCCAGCATCAATTGTGACAACATCGTTCCGAACGAAGAGCG
AAATGGAAAATTAGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCA
TTATTAAGACAAAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAA
ATGGTATCTAGTCCAATGGATTTCAATAACAACGTAAATAATCTTTTCGA
CGTTGATGTTTGTGCTGAAAGTGTAACCAAAGCGTTGTCATTTTATCACC
CTAAGGATTGGACCAACAAAATTGACTgtTCGGAGTTGGATGATTTACTC
TTAGTTACAAATACGCTTAAGCTAAAATCATTCAAATTACATTTAATCGA
ACATATGAAGACAGAATACGTATCAAAGTCAAAGCAATTTGATGAGAATT
TACTGCAagtttttcatgctgctcaaaAATGACACTAATATTTGGGCTCT
GGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCTCTCCAACAAAATAG
AGTCCTTCATACGAAATTGTGCTACAAACAGAACAAAGACAATTCTCAAC
TATTTAGTGTTAGCTGAAGATATGCATTTTGGTATTGAAGTAGAAAggag
tttggtttctaaactcTTAAGAGGGTTCCAAAATATCAGTATGTGCTTGG
AATTTCTCCTACTCAGCCGTCGAATGCAAGTTTGGATTGCAAGAAGAAAA
TTAGCTGATTCTTTGAAGAAGTTTCTGATTGATCCGTACTTTGATACTCT
TCCCAGGTATGGCAAGCAAACAACCCGAGAGAAAAAAGAGGCTGGGATAA
AGAAATATAAAGCAGTTGATGCTGACGTTGTTTCCATATTTCATGATCTA
GATCAACCCAAAATGGAGCTTATAAATGCATAATGGCATACATAATCACA
ATTTTTTGTTTGTGCCAGATTCTATTATATTAACTAAAagttctgtttta
tttaccatgcattgggcttttccagaaaaaaaccgcacaccccctgttga
ggaggtctatCCCTTtatggctggaaatgctgtaaaccccctggaattcc
aggaaattttagatttaaacCCCTCTGAAATTCTTAaatttagtaggatt
taaaaagctaccacatggaattccagttatttttgacagatttttgtatc
tccctatggaattccaccacatatatcaaaccttacccccttggaacgaa
agtggacctcctcaacaggggttttttttctggaaaaacccatTCTTAAA
ATGATTCTgtccctttttttgaaaatactttttattAAATCATTGtgatc
attttttaaataaaaaacttatTGCCTCATTTCTTGccttttttggacat
tttttaaaattgatgtttttgttttttgtccATAACTTCTGAACTAATAa
agca Run BLAST on NCBI transcript from alignment at scaffold_466:478054..481241- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067240 ID=TCONS_00067240|Name=TCONS_00067240|organism=Clytia hemisphaerica|type=transcript|length=3188bp|location=Sequence derived from alignment at scaffold_466:478054..481241- (Clytia hemisphaerica)
TTTCAGCGATAAAAAAAGAACAGAAAAACAAGAAATTATTTAAAAAAACA
GCTACAATGGCCAGCATCAATTGTGACAACATCGTTCCGAACGAAGAGCG
AAATGGAAAATTAGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCA
TTATTAAGACAAAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAA
ATGGTATCTAGTCCAATGGATTTCAATAACAACGTAAATAATCTTTTCGA
CGTTGATGTTTGTGCTGAAAGTGTAACCAAAGCGTTGTCATTTTATCACC
CTAAGGATTGGACCAACAAAATTGACTGTAAGTTTCGACTCTTTTCGCAT
TTTGTAAGTATCAATCAAAAGCCATACCGTATTGCTTTGAATAAACGCCC
CGGGTGTGTTTAAAGGTGGCGTTCATCGAAAATCTTTCCTTAAATTAGTA
GCTACAAGATAGGCCGATTCGCGAAATTCTATCCACTCGAAAAATTTTGA
TCTTCGATTCGCGAAAAAAAGTCCACGTGAAAATTAAAGATCAGCGACTT
TAAGGTAGTACCAAGAAGGCTATTTTAGTTTAAAGCTATAGAAGGTGCCA
AGAGATTCTCATATTTTTATTTCTCATACAAATATGTTTTAATACTTTGG
ATTTTTTGTATTTTTAGGTTCGGAGTTGGATGATTTACTCTTAGTTACAA
ATACGCTTAAGCTAAAATCATTCAAATTACATTTAATCGAACATATGAAG
ACAGAATACGTATCAAAGTCAAAGCAATTTGATGAGAATTTACTGCAAGT
TTTTCATGCTGCTCAAAAGTATGAATTGACTACATTAATTGAAACAATTA
GATTAAGGTCTCTGCGCATCTTAGATTTGGCTAGAAGCCAACGTACATTA
TACCTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTAT
ATGAACATGTCAATATCAACAATGATCCGGAGTTGCTTGCAATATTTCAC
CTCTTCAAATTAATTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAA
AACAGATTTCTTAACCCACCAGATTCATGAGCACTTTATTGATTATGAGT
CAATTTCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAG
AACAAAGAAATTCATGTCAGTTCGTATTTACTCATAAACAACTCTCCTGT
ATTCAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAA
GGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAA
TTTCTACACACACTTCAAGATATTAAAGGTATTTTTGTGTACAATACTCT
TGAAGTAACTTATCGTTTTTTGAACATTTCCCGACCTTTTTTCGACCTTC
ACAAACAAATTACTTCTATAGTGTCTTTTCTAATCATCAATGAATTTAGA
TTTTCAAAATTTCCTTCTTGTTTTTTACTGTCCGAATTTTCCTACCCATT
TGTAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATC
AAGTGGATTGGCTCTCCAACAAAATACAGTCCTTCATACGAAATTGTGCT
AGAAANATACCTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACC
TCTGTATATGAACATGTCAATATCAACAATGATCCGGAGTTGCTTGCAAT
ATTTCACCTCTTCAAATTAATTATTCACAAATTTCAAAACCCCGACTTGG
CTTCTAAAACAGATTTCTTAACCCACCAGATTCATGAGCACTTTATTGAT
TATGAGTCAATTTCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGA
CGTTGAGAACAAAGAAATTCATGTCAGTTCGTATTTACTCATAAACAACT
CTCCTGTATTCAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAA
AACAGAAGGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTT
CCTTCAATTTCTACACACACTTCAAGATATTAAAGGTATTTTTGTGTACA
ATACTCTTGAAGTAACTTATCGTTTTTTGAACATTTCCCGACCTTTTTTC
GACCTTCACAAACAAATTACTTCTATAGTGTCTTTTCTAATCATCAATGA
ATTTAGATTTTCAAAATTTCCTTCTTGTTTTTTACTGTCCGAATTTTCCT
ACCCATTTGTAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAA
GAATATCAAGTGGATTGGCTCTCCAACAAAATAGAGTCCTTCATACGAAA
TTGTGCTACAAACAGAACAAAGACAATTCTCAACTATTTAGTGTTAGCTG
AAGATATGCATTTTGGTATTGAAGTAGAAAGGAGTTTGGTTTCTAAACTC
TTAAGAGGGTTCCAAAATATCAGTATGTGCTTGGAATTTCTCCTACTCAG
CCGTCGAATGCAAGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGA
AGAAGTTTCTGATTGATCCGTACTTTGATACTCTTCCCAGGTATGGCAAG
CAAACAACCCGAGAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGT
TGATGCTGACGTTGTTTCCATATTTCATGATCTAGATCAACCCAAAATGG
AGCTTATAAATGCATAATGGCATACATAATCACAATTTTTTGTTTGTGCC
AGATTCTATTATATTAACTAAAAGTTCTGTTTTATTTACCATGCATTGGG
CTTTTCCAGAAAAAAACCGCACACCCCCTGTTGAGGAGGTCTATCCCTTT
ATGGCTGGAAATGCTGTAAACCCCCTGGAATTCCAGGAAATTTTAGATTT
AAACCCCTCTGAAATTCTTAAATTTAGTAGGATTTAAAAAGCTACCACAT
GGAATTCCAGTTATTTTTGACAGATTTTTGTATCTCCCTATGGAATTCCA
CCACATATATCAAACCTTACCCCCTTGGAACGAAAGTGGACCTCCTCAAC
AGGGGTTTTTTTTCTGGAAAAACCCATTCTTAAAATGATTCTGTCCCTTT
TTTTGAAAATACTTTTTATTAAATCATTGTGATCATTTTTTAAATAAAAA
ACTTATTGCCTCATTTCTTGCCTTTTTTGGACATTTTTTAAAATTGATGT
TTTTGTTTTTTGTCCATAACTTCTGAACTAATAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067240-exon-scaffold_466-1575043694:480915..481241 | TCONS_00067240-exon-scaffold_466-1575043694:480915..481241 | Clytia hemisphaerica | exon |
| TCONS_00067240-exon-scaffold_466-1575043694:480424..480574 | TCONS_00067240-exon-scaffold_466-1575043694:480424..480574 | Clytia hemisphaerica | exon |
| TCONS_00067240-exon-scaffold_466-1575043694:478054..479029 | TCONS_00067240-exon-scaffold_466-1575043694:478054..479029 | Clytia hemisphaerica | exon |
| TCONS_00067240-exon-scaffold_466-1510915933:480915..481241 | TCONS_00067240-exon-scaffold_466-1510915933:480915..481241 | Clytia hemisphaerica | exon |
| TCONS_00067240-exon-scaffold_466-1510915933:480424..480574 | TCONS_00067240-exon-scaffold_466-1510915933:480424..480574 | Clytia hemisphaerica | exon |
| TCONS_00067240-exon-scaffold_466-1510915933:478054..479029 | TCONS_00067240-exon-scaffold_466-1510915933:478054..479029 | Clytia hemisphaerica | exon |
| TCONS_00067240-exon-scaffold_466-1491911889:480915..481241 | TCONS_00067240-exon-scaffold_466-1491911889:480915..481241 | Clytia hemisphaerica | exon |
| TCONS_00067240-exon-scaffold_466-1491911889:480424..480574 | TCONS_00067240-exon-scaffold_466-1491911889:480424..480574 | Clytia hemisphaerica | exon |
| TCONS_00067240-exon-scaffold_466-1491911889:478054..479029 | TCONS_00067240-exon-scaffold_466-1491911889:478054..479029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:478054..481241 - |
Blast
The following BLAST results are available for this feature:
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