TCONS_00067238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067238
Unique NameTCONS_00067238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067238 ID=TCONS_00067238|Name=TCONS_00067238|organism=Clytia hemisphaerica|type=transcript|length=1413bp
aaaaaaagaacagaaaaacaagaaattatttaaaaaaacagcTACAATGG
CCAGCATCAATTGTGACAACATCGTTCCGAACGAAGAGCGAAATGGAAAA
TTAGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGAC
AAAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTA
GTCCAATGGATTTCAATAACAACGTAAATAATCTTTTCGACGTTGATGTT
TGTGCTGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTG
GACCAACAAAATTGACTCAATGTTGAGTTCGACAAATTTCAAAGAAGGTC
AAAACAGAAGGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTAC
TTCCTTCAATTTCTACACACACTTCAAGATATTAAAGATGACACTAATAT
TTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCTCTCCA
ACAAAATAGAGTCCTTCATACGAAATTGTGCTACAAACAGAACAAAGACA
ATTCTCAACTATTTAGTGTTAGCTGAAGATATGCATTTTGGTATTGAAGT
AGAAAggagtttggtttctaaactcTTAAGAGGGTTCCAAAATATCAGTA
TGTGCTTGGAATTTCTCCTACTCAGCCGTCGAATGCAAGTTTGGATTGCA
AGAAGAAAATTAGCTGATTCTTTGAAGAAGTTTCTGATTGATCCGTACTT
TGATACTCTTCCCAGGTATGGCAAGCAAACAACCCGAGAGAAAAAAGAGG
CTGGGATAAAGAAATATAAAGCAGTTGATGCTGACGTTGTTTCCATATTT
CATGATCTAGATCAACCCAAAATGGAGCTTATAAATGCATAATGGCATAC
ATAATCACAATTTTTTGTTTGTGCCAGATTCTATTATATTAACTAAAagt
tctgttttatttaccatgcattgggcttttccagaaaaaaaccgcacacc
ccctgttgaggaggtctatCCCTTtatggctggaaatgctgtaaaccccc
tggaattccaggaaattttagatttaaacCCCTCTGAAATTCTTAaattt
agtaggatttaaaaagctaccacatggaattccagttatttttgacagat
ttttgtatctccctatggaattccaccacatatatcaaaccttaccccct
tggaacgaaagtggacctcctcaacaggggttttttttctggaaaaaccc
atTCTTAAAATGATTCTgtccctttttttgaaaatactttttattAAATC
ATTGtgatcattttttaaataaaaaacttatTGCCTCATTTCTTGccttt
tttggacattttttaaaattgatgtttttgttttttgtccATAACTTCTG
AACTAATAaagca
Run BLAST on NCBI

transcript from alignment at scaffold_466:478054..481231-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067238 ID=TCONS_00067238|Name=TCONS_00067238|organism=Clytia hemisphaerica|type=transcript|length=3178bp|location=Sequence derived from alignment at scaffold_466:478054..481231- (Clytia hemisphaerica)
AAAAAAAGAACAGAAAAACAAGAAATTATTTAAAAAAACAGCTACAATGG
CCAGCATCAATTGTGACAACATCGTTCCGAACGAAGAGCGAAATGGAAAA
TTAGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGAC
AAAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTA
GTCCAATGGATTTCAATAACAACGTAAATAATCTTTTCGACGTTGATGTT
TGTGCTGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTG
GACCAACAAAATTGACTGTAAGTTTCGACTCTTTTCGCATTTTGTAAGTA
TCAATCAAAAGCCATACCGTATTGCTTTGAATAAACGCCCCGGGTGTGTT
TAAAGGTGGCGTTCATCGAAAATCTTTCCTTAAATTAGTAGCTACAAGAT
AGGCCGATTCGCGAAATTCTATCCACTCGAAAAATTTTGATCTTCGATTC
GCGAAAAAAAGTCCACGTGAAAATTAAAGATCAGCGACTTTAAGGTAGTA
CCAAGAAGGCTATTTTAGTTTAAAGCTATAGAAGGTGCCAAGAGATTCTC
ATATTTTTATTTCTCATACAAATATGTTTTAATACTTTGGATTTTTTGTA
TTTTTAGGTTCGGAGTTGGATGATTTACTCTTAGTTACAAATACGCTTAA
GCTAAAATCATTCAAATTACATTTAATCGAACATATGAAGACAGAATACG
TATCAAAGTCAAAGCAATTTGATGAGAATTTACTGCAAGTTTTTCATGCT
GCTCAAAAGTATGAATTGACTACATTAATTGAAACAATTAGATTAAGGTC
TCTGCGCATCTTAGATTTGGCTAGAAGCCAACGTACATTATACCTCGCTG
GAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTATATGAACATGT
CAATATCAACAATGATCCGGAGTTGCTTGCAATATTTCACCTCTTCAAAT
TAATTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAAACAGATTTC
TTAACCCACCAGATTCATGAGCACTTTATTGATTATGAGTCAATTTCCTA
CAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAGAACAAAGAAA
TTCATGTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATTCAAAGCA
ATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGATTGAACT
TCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTTCTACACA
CACTTCAAGATATTAAAGGTATTTTTGTGTACAATACTCTTGAAGTAACT
TATCGTTTTTTGAACATTTCCCGACCTTTTTTCGACCTTCACAAACAAAT
TACTTCTATAGTGTCTTTTCTAATCATCAATGAATTTAGATTTTCAAAAT
TTCCTTCTTGTTTTTTACTGTCCGAATTTTCCTACCCATTTGTAGATGAC
ACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTGGATTG
GCTCTCCAACAAAATACAGTCCTTCATACGAAATTGTGCTAGAAANATAC
CTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTATATG
AACATGTCAATATCAACAATGATCCGGAGTTGCTTGCAATATTTCACCTC
TTCAAATTAATTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAAAC
AGATTTCTTAACCCACCAGATTCATGAGCACTTTATTGATTATGAGTCAA
TTTCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAGAAC
AAAGAAATTCATGTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATT
CAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGA
TTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTT
CTACACACACTTCAAGATATTAAAGGTATTTTTGTGTACAATACTCTTGA
AGTAACTTATCGTTTTTTGAACATTTCCCGACCTTTTTTCGACCTTCACA
AACAAATTACTTCTATAGTGTCTTTTCTAATCATCAATGAATTTAGATTT
TCAAAATTTCCTTCTTGTTTTTTACTGTCCGAATTTTCCTACCCATTTGT
AGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAG
TGGATTGGCTCTCCAACAAAATAGAGTCCTTCATACGAAATTGTGCTACA
AACAGAACAAAGACAATTCTCAACTATTTAGTGTTAGCTGAAGATATGCA
TTTTGGTATTGAAGTAGAAAGGAGTTTGGTTTCTAAACTCTTAAGAGGGT
TCCAAAATATCAGTATGTGCTTGGAATTTCTCCTACTCAGCCGTCGAATG
CAAGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGAAGAAGTTTCT
GATTGATCCGTACTTTGATACTCTTCCCAGGTATGGCAAGCAAACAACCC
GAGAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGTTGATGCTGAC
GTTGTTTCCATATTTCATGATCTAGATCAACCCAAAATGGAGCTTATAAA
TGCATAATGGCATACATAATCACAATTTTTTGTTTGTGCCAGATTCTATT
ATATTAACTAAAAGTTCTGTTTTATTTACCATGCATTGGGCTTTTCCAGA
AAAAAACCGCACACCCCCTGTTGAGGAGGTCTATCCCTTTATGGCTGGAA
ATGCTGTAAACCCCCTGGAATTCCAGGAAATTTTAGATTTAAACCCCTCT
GAAATTCTTAAATTTAGTAGGATTTAAAAAGCTACCACATGGAATTCCAG
TTATTTTTGACAGATTTTTGTATCTCCCTATGGAATTCCACCACATATAT
CAAACCTTACCCCCTTGGAACGAAAGTGGACCTCCTCAACAGGGGTTTTT
TTTCTGGAAAAACCCATTCTTAAAATGATTCTGTCCCTTTTTTTGAAAAT
ACTTTTTATTAAATCATTGTGATCATTTTTTAAATAAAAAACTTATTGCC
TCATTTCTTGCCTTTTTTGGACATTTTTTAAAATTGATGTTTTTGTTTTT
TGTCCATAACTTCTGAACTAATAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042004XLOC_042004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067238-exon-scaffold_466-1575043694:480915..481231TCONS_00067238-exon-scaffold_466-1575043694:480915..481231Clytia hemisphaericaexon
TCONS_00067238-exon-scaffold_466-1575043694:479914..480033TCONS_00067238-exon-scaffold_466-1575043694:479914..480033Clytia hemisphaericaexon
TCONS_00067238-exon-scaffold_466-1575043694:478054..479029TCONS_00067238-exon-scaffold_466-1575043694:478054..479029Clytia hemisphaericaexon
TCONS_00067238-exon-scaffold_466-1510915933:480915..481231TCONS_00067238-exon-scaffold_466-1510915933:480915..481231Clytia hemisphaericaexon
TCONS_00067238-exon-scaffold_466-1510915933:479914..480033TCONS_00067238-exon-scaffold_466-1510915933:479914..480033Clytia hemisphaericaexon
TCONS_00067238-exon-scaffold_466-1510915933:478054..479029TCONS_00067238-exon-scaffold_466-1510915933:478054..479029Clytia hemisphaericaexon
TCONS_00067238-exon-scaffold_466-1491911889:480915..481231TCONS_00067238-exon-scaffold_466-1491911889:480915..481231Clytia hemisphaericaexon
TCONS_00067238-exon-scaffold_466-1491911889:479914..480033TCONS_00067238-exon-scaffold_466-1491911889:479914..480033Clytia hemisphaericaexon
TCONS_00067238-exon-scaffold_466-1491911889:478054..479029TCONS_00067238-exon-scaffold_466-1491911889:478054..479029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:478054..481231 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (0.474712 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.129914	0.102676	0	0	0	0.347116	0	0.0838118	0	0	0	0	0.0946921	0.0834748	0.302736	0.332503	0.21307	0	0	0.238578	0.184598	0	0	0	0	0	0	0.474712	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400Sequence
Match NameE-valueIdentityDescription
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