TCONS_00067236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067236
Unique NameTCONS_00067236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067236 ID=TCONS_00067236|Name=TCONS_00067236|organism=Clytia hemisphaerica|type=transcript|length=1692bp
TTCACGAATGGTTAGGGAAAATTTCTAAAGATTTTGTTCAATCCAAGTAG
AAATACCTGACTCAAAATCATTTGGTATTGTTTCATTTCAGcgataaaaa
aagaacagaaaaacaagaaattatttgaaaaaacaGCTACAATGGCCAGC
ATCAATGGTGACAACATCGTTCCAAACgaagaacaaaatgaaaaattggt
tCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACAAAAG
ACAAAGAAGTTCATTTGCCATCCAGTTTCTTAGAAATGGTATCTAGTCCA
ATGGATTTCAATAACaacgaaaaaaatgttttcgacGTCGATGTTTGTGC
AGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGGACCA
ACGAAATTAAATgtTCAGAGTTGGATGATTTACACTTAGTTGCCAATACG
CTTAAGCTTAAATTATTCAAATTACATTTAATCGAACGTATGAAAACAAA
ATGCAAAGCAACCAGTCAATTTAATGATGCAAATCATTTTAACGcaagtt
ttcttcaaattttccatGTTGCTCAAAAGTATGGATTGACTTCAATAATC
AAAGCTATTAGATCAAGACATCTATATATTACCGATTACAATTTCAAGCT
TTTCGACGACCTTCATTTCACCGCTTTGGAGAAGAGATATCGATGTGAAA
TTTTACAGACCTCTGTAATGAAGTACCCACTGAATCAAAATAGTGGCCTA
TCCGAAAGTACGAAAACAGAGTTAAGTTCAATATTTCACCTTTTCAAATT
GTTANCAAAATAGTAGCCTATCCGAAAGTACGAAAACAGAGTTAAGTTCA
ATATTTCACCTTTTCAAATTGATAATCCACAAATTTCAAAGAGTAGACTT
ATCCTCTAAAACAGATTTTTTAACTCAGGAAATTCCTGAGCATTTAATTG
ACCCGGAATCTATTTCCTACAAAAGAGGTTCTCCAGATTGTGTTGTCTTG
GACGTTgagaacaaagaaattcatgTCAGTTCGTATTTACTCATAAACAA
CTCTCCTGTATTCAAAGCAATGCTTCAGTCGACAAATTTCAAAGAAGGTC
AAAACAGAAGGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTAC
TTCCTTCAACACCTGCATTCGCTCCAAGATATCAACGATGATACCAATAT
TTGGGCACTCGCTCATTTTTGTCAAGAATATCAAGTTGATTGGCTATCCG
ACAAAATCAAATCCTTTATACAAGGTTTCCTTTTCAAATGACACGACGTC
GATTCTCAATTATTTGGTGCTTGCTGAGGAGATGAATTTCGGTCACGAGA
TAGAAGAATTTCTAGTCCACAAGCTGACGGGACTATTCCAAAATATCAGC
ATGTGTTTGGAATTTCTATTACTAAGTCATCGAATGCAGGTTTTAATCgc
aagaagaaaattaattaattgaaaGTTGAAAGGGCTTTGGGTTAATGTCT
ATAAAAATAACAAGCACTTCAAATCTAAGCTGGAAGCAGGAATAAAGAAT
TGCAAAGCAGTCGATGTAGAGGTTGTTTCCATATTCAACGATCTAGATCA
ACCTAACATTCCAGATCAACCTAACATTCCTGTTCAAACTTATTCGTTTG
CTCAATTTCGAAGACCCCTCATATTGTAACCTTGATGGGGGG
Run BLAST on NCBI

transcript from alignment at scaffold_466:473322..475782-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067236 ID=TCONS_00067236|Name=TCONS_00067236|organism=Clytia hemisphaerica|type=transcript|length=2461bp|location=Sequence derived from alignment at scaffold_466:473322..475782- (Clytia hemisphaerica)
TTCACGAATGGTTAGGGAAAATTTCTAAAGATTTTGTTCAATCCAAGTAG
AAATACCTGACTCAAAATCATTTGGTATTGTTTCATTTCAGCGATAAAAA
AAGAACAGAAAAACAAGAAATTATTTGAAAAAACAGCTACAATGGCCAGC
ATCAATGGTGACAACATCGTTCCAAACGAAGAACAAAATGAAAAATTGGT
TCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACAAAAG
ACAAAGAAGTTCATTTGCCATCCAGTTTCTTAGAAATGGTATCTAGTCCA
ATGGATTTCAATAACAACGAAAAAAATGTTTTCGACGTCGATGTTTGTGC
AGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGGACCA
ACGAAATTAAATGTAACTTTCAACTCTTTTCACATTTTGAAAGTATCAAT
CAAAGGTCAATACCATATTGCTTTGGTGAGAGGGGAGGGGGTTCATAAAA
TTTCCTCCAAGAGGGCTTTTAAAAGCGTGTCAACACATAAGCCTATCATC
CCTATCCCAACATGCGTGTTTTGCTTTTGTGAATTAAAGTGGTGGGATTG
AAGAGGCCCCCAGTGGACTTTCAATCACGCAATCACGCAAATTTTTTCCC
CAAATTCACGCTTTCACGCAATGTTTTTTCACAGCTCACGCAATTTTTGT
TCACGCAAAGCTTTCCAATTCATGCATTCACGCAATTTTTTTTTAATTTT
CACGCATTCGCGCAAGTGAAAAAGCCCATTCACACAAACCGCTAGGGGGC
ATTGAAACCACCATCTCTCCGACCAGGAAGAGATGCCTTATGGATAAAAA
ATTTGTCGGTGAATCAAACATCAATTTAATTCCTTTTGTCTTTTTTTAGG
TTCAGAGTTGGATGATTTACACTTAGTTGCCAATACGCTTAAGCTTAAAT
TATTCAAATTACATTTAATCGAACGTATGAAAACAAAATGCAAAGCAACC
AGTCAATTTAATGATGCAAATCATTTTAACGCAAGTTTTCTTCAAATTTT
CCATGTTGCTCAAAAGTATGGATTGACTTCAATAATCAAAGCTATTAGAT
CAAGACATCTATATATTACCGATTACAATTTCAAGCTTTTCGACGACCTT
CATTTCACCGCTTTGGAGAAGAGATATCGATGTGAAATTTTACAGACCTC
TGTAATGAAGTACCCACTGAATCAAAATAGTGGCCTATCCGAAAGTACGA
AAACAGAGTTAAGTTCAATATTTCACCTTTTCAAATTGTTANCAAAATAG
TAGCCTATCCGAAAGTACGAAAACAGAGTTAAGTTCAATATTTCACCTTT
TCAAATTGATAATCCACAAATTTCAAAGAGTAGACTTATCCTCTAAAACA
GATTTTTTAACTCAGGAAATTCCTGAGCATTTAATTGACCCGGAATCTAT
TTCCTACAAAAGAGGTTCTCCAGATTGTGTTGTCTTGGACGTTGAGAACA
AAGAAATTCATGTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATTC
AAAGCAATGCTTCAGTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGAT
TGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAACACC
TGCATTCGCTCCAAGATATCAACGGTACACATCTTTTTATAAGCAACCTC
AATTTTCGGCCCAGGGCTAAGGATTTTTCGGATTTCAGCCAAAGGTTTTG
GCTTTTTATCTCATTTAATGTTCACAAAATGGACCCACTTTGAAGGACAA
CTTTTTCGAAAAAGGTTTGAAGCCTTGAAATAATCTGCTCAGAATTAACT
TTCCAATGAGTTTATATATGTTCATTATATCTTTTTGCCTTAGAAAGCAA
TTTATGGAAACTTGGGCAATGACATTTTTTTGAAACAGACTTCAATTCCT
TTTTAGATGATACCAATATTTGGGCACTCGCTCATTTTTGTCAAGAATAT
CAAGTTGATTGGCTATCCGACAAAATCAAATCCTTTATACAAGGTTTCCT
TTTCAAATGACACGACGTCGATTCTCAATTATTTGGTGCTTGCTGAGGAG
ATGAATTTCGGTCACGAGATAGAAGAATTTCTAGTCCACAAGCTGACGGG
ACTATTCCAAAATATCAGCATGTGTTTGGAATTTCTATTACTAAGTCATC
GAATGCAGGTTTTAATCGCAAGAAGAAAATTAATTAATTGAAAGTTGAAA
GGGCTTTGGGTTAATGTCTATAAAAATAACAAGCACTTCAAATCTAAGCT
GGAAGCAGGAATAAAGAATTGCAAAGCAGTCGATGTAGAGGTTGTTTCCA
TATTCAACGATCTAGATCAACCTAACATTCCAGATCAACCTAACATTCCT
GTTCAAACTTATTCGTTTGCTCAATTTCGAAGACCCCTCATATTGTAACC
TTGATGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042004XLOC_042004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067236-exon-scaffold_466-1575043694:475371..475782TCONS_00067236-exon-scaffold_466-1575043694:475371..475782Clytia hemisphaericaexon
TCONS_00067236-exon-scaffold_466-1575043694:474109..474883TCONS_00067236-exon-scaffold_466-1575043694:474109..474883Clytia hemisphaericaexon
TCONS_00067236-exon-scaffold_466-1575043694:473322..473826TCONS_00067236-exon-scaffold_466-1575043694:473322..473826Clytia hemisphaericaexon
TCONS_00067236-exon-scaffold_466-1510915933:475371..475782TCONS_00067236-exon-scaffold_466-1510915933:475371..475782Clytia hemisphaericaexon
TCONS_00067236-exon-scaffold_466-1510915933:474109..474883TCONS_00067236-exon-scaffold_466-1510915933:474109..474883Clytia hemisphaericaexon
TCONS_00067236-exon-scaffold_466-1510915933:473322..473826TCONS_00067236-exon-scaffold_466-1510915933:473322..473826Clytia hemisphaericaexon
TCONS_00067236-exon-scaffold_466-1491911889:475371..475782TCONS_00067236-exon-scaffold_466-1491911889:475371..475782Clytia hemisphaericaexon
TCONS_00067236-exon-scaffold_466-1491911889:474109..474883TCONS_00067236-exon-scaffold_466-1491911889:474109..474883Clytia hemisphaericaexon
TCONS_00067236-exon-scaffold_466-1491911889:473322..473826TCONS_00067236-exon-scaffold_466-1491911889:473322..473826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:473322..475782 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.513554 tpm) - - (4.61761 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97069	1.99398	0.708148	1.40695	2.81588	1.57156	1.95517	2.78911	1.75029	1.59882	3.26337	1.91669	2.72657	2.14365	2.52356	1.66037	1.9105	1.57783	0.729794	1.3211	1.90141	1.73747	2.30657	2.32274	4.61761	4.24035	0.513554	0.731317	2.13629	1.90005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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