TCONS_00067232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067232
Unique NameTCONS_00067232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067232 ID=TCONS_00067232|Name=TCONS_00067232|organism=Clytia hemisphaerica|type=transcript|length=2321bp
tttcagtgaaaaaaaaaacaatccaaaaaaatgagtaaaaggaaaaacaa
agaCCTTTCGGCGTTTACTCCAAAGCTTGAAGGCGATGGAAAACATCCTA
AGATGTTGAAAGGAGTAACAAACGAGaaacgaaaagaaaaattgattccg
ttcgattttgatgaaaatgattgtgacgtcatcatcgAAGCAAAAGACAA
AGAAGTTCACTTACCGTCCAGTTTCTTGGAGATGGTATCTGGTGGACGGA
CTTTGCCAATGATTTCTAAAACAGATGTTACTTCGGAACGATTGATCAAa
gttttgtcattttattgtcCAAAGATCTCTACCAACAAGCTTGAGTTTTG
CAATGTAGCGGAAGTTGACGATTTATTCAAAATCAGCACAACACTccatt
tgaaaatgtttcaagATTATTTGTTGGAGCAAATCGATGTAAAGTATATT
GAAAGTTGTCAGAATTTCAACGAGGATCTGCTCGTAATATTAAATGTTTT
TCACAAGTATGACATCCAGGGGTATGTTCGTCAAATCATGATAAAAGAAA
TGATCTTGGAAACTTTAAACCATTCACTGAAACCATCTTTTAAAACTCTG
GATAAAAAACTACAAAtggaaattatcaaaaattctGTTCTCAAAGTTTA
TCATAGTAAATTCAAGAGCGGGTTTACTGATGCCAGCatgattttcaatt
tcttcGAATTGATTTTACACGAGGATCGAGTTGTTGATTTATCAGTGAAA
AAAGACTTTCTTGAACCTTTGAAAAGTNCatgattttcaatttcttcGAA
TTGATTTTACACGAGGATCGAGTTGTTGATTTATCAGTGAAAAAAGACTT
TCTTGAACCTTTGAAAAGTCCCAACATTGACATTGACTTAGAATCAATTA
CTTGTCCAAAAAATTCTCCAAATTGTATCACTTTGGTTGTAGAGGAAAGG
AGATTCACGTCAATTCTTTTATACTTACCAATAATTCTCCAGTGTTCAAA
GCAATGTTGAGTTCAACACATTTCATAGAAGGTCAGAGTAGAAGAATCGA
CTTGCCTGGCAAGAAATTGACACATGTTGCATGCCTTTTGCACCATTTAG
CCTCACTTTGTCACTCTTTTAACTATGAAAAAGACATGCTCATTTTGTCA
CCACTCTGCCAAGAATATCAAATCGATTGGCTGACAGATAAGGTTAAATC
GTACATTTCGACCATTTCAACGTCAAAAAGCAAATCCTTACTCGAGTACC
TTGTGATATCAGAGAAGATGGGGNGACCATTTCAACGTCAAAAAGCAAAT
CCTTACTCGAGTACCTTGTGATATCAGAGAAGATGGGTTTTAATAAACTG
GAAGAGggactgaccaatcaaatttctgagccatttccggttctacaaaT
GTGTGTGGAATTTTCGAAGCTCAATCGACGAATTCAAATCTTAATTGCCA
GAAAATGTCTTTGGAAACTCTTGAAGGGTAATAAGGTTGATGCGAGCATC
ATAGACCATGCTTTGGTATCAATCTTCAGTGAATTCGAACAAAATCTCTT
GGAAGAAACACTCAGTCAAGTTGCAATAATGTCGGAAATTAATCTTGCGA
AGATAACTCCAATACCATATACCTTGATGAAAAGTACTTTCAGAAAGAGC
AGATAAAGAATAGATTGATTCTTATTTTATTGTTACTGATGGTAACCAGA
ACCAGATATTGAACCGATGTAACGGAAAAAGAGTCTCAATTTGATCGATA
TTCAGgctaatacacccctgtctcagtgcccggTAAAACTTTCTGCCACG
CTGAGGATGACAATGTATATCGAAATCCAAATGtggataaaaattatttt
gttaccAGCTCCAAAAATCCAATGCAAATGGTTTTCGagtatattttttt
tcgttGCACATCGAAGTCATTTTCCCAGTGGGGGTTGATTATGTTAGTGT
CTTTTTTTTCTAACAGGGAACAAAATTTCGGTCAGAATTTCCAGTTTAGT
GGAGGTCACACCGGGTCTATGACACGGGGTATGGCTAAACACCGTATTCG
AATTCAGATGTTATGTGCTTGAAACGAGATTTTATATTCCAAATTCTTAG
AATATCATTTCCTTAGaatgttttccttttcctttagCTTGGATACCCAA
AACATTGTATACTGTAGATTGTTAACCTTTTTCTCTCGGATATATTTTCA
AACGGGAAACCATAAAGATATCACTTTCTTCCTGGATTATTTTATTCTTT
AAGTTAAACCCTAAAATATCGCAATTTTACCTTGAAAATAGAACAATTAT
AGGCTCAAAGGGAAATAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00067232-protein

>TCONS_00067232-protein ID=TCONS_00067232-protein|Name=TCONS_00067232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MSKRKNKDLSAFTPKLEGDGKHPKMLKGVTNEKRKEKLIPFDFDENDCDV
IIEAKDKEVHLPSSFLEMVSGGRTLPMISKTDVTSERLIKVLSFYCPKIS
TNKLEFCNVAEVDDLFKISTTLHLKMFQDYLLEQIDVKYIESCQNFNEDL
LVILNVFHKYDIQGYVRQIMIKEMILETLNHSLKPSFKTLDKKLQMEIIK
NSVLKVYHSKFKSGFTDASMIFNFFELILHEDRVVDLSVKKDFLEPLKSX
Run BLAST on NCBI

transcript from alignment at scaffold_466:444777..448613-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067232 ID=TCONS_00067232|Name=TCONS_00067232|organism=Clytia hemisphaerica|type=transcript|length=3837bp|location=Sequence derived from alignment at scaffold_466:444777..448613- (Clytia hemisphaerica)
TTTCAGTGAAAAAAAAAACAATCCAAAAAAATGAGTAAAAGGAAAAACAA
AGACCTTTCGGCGTTTACTCCAAAGCTTGAAGGCGATGGAAAACATCCTA
AGATGTTGAAAGGAGTAACAAACGAGAAACGAAAAGAAAAATTGATTCCG
TTCGATTTTGATGAAAATGATTGTGACGTCATCATCGAAGCAAAAGACAA
AGAAGTTCACTTACCGTCCAGTTTCTTGGAGATGGTATCTGGTGGACGGA
CTTTGCCAATGATTTCTAAAACAGATGTTACTTCGGAACGATTGATCAAA
GTTTTGTCATTTTATTGTCCAAAGATCTCTACCAACAAGCTTGAGTGTAA
GCATTAAACTCTTTTTTATAAGGAACCTTAACTTGGTTCCAAGCCTGGAG
TTCCTTATTTTTCAGATAATTCCAGCCTCAAAGTTCCTTATTGAATTTCT
TGGCTGTTAAGATTGGATTTGCTAAGTATGTGACTTATATATAAGTATAA
CAAAGGACTGCAGTACAGAAAAAGACGTTTATTGAATGTTGCTTCGTCAA
TATTTTGTCATCTTTTTGTTTAGGCTTTTGTAAATGCGTGCAAGTTCAAG
TTTAACTCTTTGTTCTTTAACAAAGCCTGAGCAGTTCCTTAACAATTCCT
TATTTTTCGATCCATTTTTCGCCTCAAGTTCTTTATAACTTGTAATTTAC
AGTTTCTTGGTTTACCATCAATATTTAAATTTTGCTGAGATTTTAAGAAG
CTCAGTCGAAATCTTTGGCATAAATGTGTGGCCCTGAATGAAATCTCCCA
CGGTTCCTACGGAACAATTTCATTCTTTGAGAAATAATGTATTCTTTTAC
ATTTTACAGTTTGCAATGTAGCGGAAGTTGACGATTTATTCAAAATCAGC
ACAACACTCCATTTGAAAATGTTTCAAGATTATTTGTTGGAGCAAATCGA
TGTAAAGTATATTGAAAGTTGTCAGAATTTCAACGAGGATCTGCTCGTAA
TATTAAATGTTTTTCACAAGTATGACATCCAGGGGTATGTTCGTCAAATC
ATGATAAAAGAAATGATCTTGGAAACTTTAAACCATTCACTGAAACCATC
TTTTAAAACTCTGGATAAAAAACTACAAATGGAAATTATCAAAAATTCTG
TTCTCAAAGTTTATCATAGTAAATTCAAGAGCGGGTTTACTGATGCCAGC
ATGATTTTCAATTTCTTCGAATTGATTTTACACGAGGATCGAGTTGTTGA
TTTATCAGTGAAAAAAGACTTTCTTGAACCTTTGAAAAGTNCATGATTTT
CAATTTCTTCGAATTGATTTTACACGAGGATCGAGTTGTTGATTTATCAG
TGAAAAAAGACTTTCTTGAACCTTTGAAAAGTCCCAACATTGACATTGAC
TTAGAATCAATTACTTGTCCAAAAAATTCTCCAAATTGTATCACTTTGGT
TGTAGAGGAAAGGAGATTCACGTCAATTCTTTTATACTTACCAATAATTC
TCCAGTGTTCAAAGCAATGTTGAGTTCAACACATTTCATAGAAGGTCAGA
GTAGAAGAATCGACTTGCCTGGCAAGAAATTGACACATGTTGCATGCCTT
TTGCACCATTTAGCCTCACTTTGTCACTCTTTTAACTGTAAGTACTTTTG
CAACATTTAGCCTCGCTTGTCTCTCTTTTAACTGTTTTTTTTATAAGCAT
TGCACTTATAAGCATATCTAGGCTCAGATATGCGGAAAAATTAAGCATAT
GGCAAGCATTACTTGAGCCTACGAAAAATGTTTTTTTCCTGATTTTGGCT
TTTTTTGGCTGGAATTTTACGGATTTTCAGTATTTCCCTGAATTTATGCT
TTAGATTTAAGCATCCCCTCAAGCATTTTCAGCCTTATTAAGCTTTCGAA
CTAAGCATCTCTGAGCCTGTTTTCGGATTTTTGTATGCTTATAAAAAAAA
ACATGTAGTACAAATAAAGCAAAAAATAATGGAGGGAACAAATTTTAGTT
TATACAAACTATAAATCTTCGGCCTTCACAAACCATGGTTTCACTTGGAA
ATTAGATCGTTCTTTTGATATACTGAGCTAATAACAGTTGAAAAAGAAGT
TTTCAGCAGGGTATCCCTTACTCCTTATTTCATCAACAATTCTTGCAGTT
GAAATACACGTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATG
TTTCTTAAGAAATCGGTCTTTTGAGCCTTAAATGTTTCTTGCATGTTTCT
AAACTTTTTGACATAATCAGCCTATTTTTCATGCAAAGATTGGAAGGTTC
TAAAAAAACCGTGTTAAAAATGTTATTTTCTCATTCTCAGTCTCAGCATG
TTTCTTAGATGTTTCTTAGTTTTTAGGCATTCTGAGCTTCATGTTTCTTA
AAAGTGTGTTTCTTAAAAAAAAAAAAAACGTGTACCTTTCCTGACGAAAT
AGGCCCAAAATGAAATGTAAAAATTTTCGGTGACGGTATTTGGACCATTG
AAACCCCCCCTTCAATCATGCTATCGTGGCTTTCGCCTTAGGGGATGGAG
TTAGCAAGGCTGGCGTCCTTACCTCCCCATCTACCTATGTTTTTTTTTTC
AATCTTTGCATCTTTCAGAGTATTAATGATTACTTTTCAGATGAAAAAGA
CATGCTCATTTTGTCACCACTCTGCCAAGAATATCAAATCGATTGGCTGA
CAGATAAGGTTAAATCGTACATTTCGACCATTTCAACGTCAAAAAGCAAA
TCCTTACTCGAGTACCTTGTGATATCAGAGAAGATGGGGNGACCATTTCA
ACGTCAAAAAGCAAATCCTTACTCGAGTACCTTGTGATATCAGAGAAGAT
GGGTTTTAATAAACTGGAAGAGGGACTGACCAATCAAATTTCTGAGCCAT
TTCCGGTTCTACAAATGTGTGTGGAATTTTCGAAGCTCAATCGACGAATT
CAAATCTTAATTGCCAGAAAATGTCTTTGGAAACTCTTGAAGGGTAATAA
GGTTGATGCGAGCATCATAGACCATGCTTTGGTATCAATCTTCAGTGAAT
TCGAACAAAATCTCTTGGAAGAAACACTCAGTCAAGTTGCAATAATGTCG
GAAATTAATCTTGCGAAGATAACTCCAATACCATATACCTTGATGAAAAG
TACTTTCAGAAAGAGCAGATAAAGAATAGATTGATTCTTATTTTATTGTT
ACTGATGGTAACCAGAACCAGATATTGAACCGATGTAACGGAAAAAGAGT
CTCAATTTGATCGATATTCAGGCTAATACACCCCTGTCTCAGTGCCCGGT
AAAACTTTCTGCCACGCTGAGGATGACAATGTATATCGAAATCCAAATGT
GGATAAAAATTATTTTGTTACCAGCTCCAAAAATCCAATGCAAATGGTTT
TCGAGTATATTTTTTTTCGTTGCACATCGAAGTCATTTTCCCAGTGGGGG
TTGATTATGTTAGTGTCTTTTTTTTCTAACAGGGAACAAAATTTCGGTCA
GAATTTCCAGTTTAGTGGAGGTCACACCGGGTCTATGACACGGGGTATGG
CTAAACACCGTATTCGAATTCAGATGTTATGTGCTTGAAACGAGATTTTA
TATTCCAAATTCTTAGAATATCATTTCCTTAGAATGTTTTCCTTTTCCTT
TAGCTTGGATACCCAAAACATTGTATACTGTAGATTGTTAACCTTTTTCT
CTCGGATATATTTTCAAACGGGAAACCATAAAGATATCACTTTCTTCCTG
GATTATTTTATTCTTTAAGTTAAACCCTAAAATATCGCAATTTTACCTTG
AAAATAGAACAATTATAGGCTCAAAGGGAAATAAAAA

Coding sequence (CDS) from alignment at scaffold_466:444777..448613-

>TCONS_00067232 ID=TCONS_00067232|Name=TCONS_00067232|organism=Clytia hemisphaerica|type=CDS|length=1506bp|location=Sequence derived from alignment at scaffold_466:444777..448613- (Clytia hemisphaerica)
TTTGCAATGTAGCGGAAGTTGACGATTTATTCAAAATCAGCACAACACTC
CATTTGAAAATGTTTCAAGATTATTTGTTGGAGCAAATCGATGTAAAGTA
TATTGAAAGTTGTCAGAATTTCAACGAGGATCTGCTCGTAATATTAAATG
TTTTTCACAAGTATGACATCCAGGGGTATGTTCGTCAAATCATGATAAAA
GAAATGATCTTGGAAACTTTAAACCATTCACTGAAACCATCTTTTAAAAC
TCTGGATAAAAAACTACAAATGGAAATTATCAAAAATTCTGTTCTCAAAG
TTTATCATAGTAAATTCAAGAGCGGGTTTACTGATGCCAGCATGATTTTC
AATTTCTTCGAATTGATTTTACACGAGGATCGAGTTGTTGATTTATCAGT
GAAAAAAGACTTTCTTGAACCTTTGAAAAGTNCATGAATGAGTAAAAGGA
AAAACAAAGACCTTTCGGCGTTTACTCCAAAGCTTGAAGGCGATGGAAAA
CATCCTAAGATGTTGAAAGGAGTAACAAACGAGAAACGAAAAGAAAAATT
GATTCCGTTCGATTTTGATGAAAATGATTGTGACGTCATCATCGAAGCAA
AAGACAAAGAAGTTCACTTACCGTCCAGTTTCTTGGAGATGGTATCTGGT
GGACGGACTTTGCCAATGATTTCTAAAACAGATGTTACTTCGGAACGATT
GATCAAAGTTTTGTCATTTTATTGTCCAAAGATCTCTACCAACAAGCTTG
AGTTTTGCAATGTAGCGGAAGTTGACGATTTATTCAAAATCAGCACAACA
CTCCATTTGAAAATGTTTCAAGATTATTTGTTGGAGCAAATCGATGTAAA
GTATATTGAAAGTTGTCAGAATTTCAACGAGGATCTGCTCGTAATATTAA
ATGTTTTTCACAAGTATGACATCCAGGGGTATGTTCGTCAAATCATGATA
AAAGAAATGATCTTGGAAACTTTAAACCATTCACTGAAACCATCTTTTAA
AACTCTGGATAAAAAACTACAAATGGAAATTATCAAAAATTCTGTTCTCA
AAGTTTATCATAGTAAATTCAAGAGCGGGTTTACTGATGCCAGCATGATT
TTCAATTTCTTCGAATTGATTTTACACGAGGATCGAGTTGTTGATTTATC
AGTGAAAAAAGACTTTCTTGAACCTTTGAAAAGTNCATGAATGAGTAAAA
GGAAAAACAAAGACCTTTCGGCGTTTACTCCAAAGCTTGAAGGCGATGGA
AAACATCCTAAGATGTTGAAAGGAGTAACAAACGAGAAACGAAAAGAAAA
ATTGATTCCGTTCGATTTTGATGAAAATGATTGTGACGTCATCATCGAAG
CAAAAGACAAAGAAGTTCACTTACCGTCCAGTTTCTTGGAGATGGTATCT
GGTGGACGGACTTTGCCAATGATTTCTAAAACAGATGTTACTTCGGAACG
ATTGATCAAAGTTTTGTCATTTTATTGTCCAAAGATCTCTACCAACAAGC
TTGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042000XLOC_042000Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067232-proteinTCONS_00067232-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067232-exon-scaffold_466-1575043694:448268..448613TCONS_00067232-exon-scaffold_466-1575043694:448268..448613Clytia hemisphaericaexon
TCONS_00067232-exon-scaffold_466-1575043694:446977..447754TCONS_00067232-exon-scaffold_466-1575043694:446977..447754Clytia hemisphaericaexon
TCONS_00067232-exon-scaffold_466-1575043694:444777..445973TCONS_00067232-exon-scaffold_466-1575043694:444777..445973Clytia hemisphaericaexon
TCONS_00067232-exon-scaffold_466-1510915933:448268..448613TCONS_00067232-exon-scaffold_466-1510915933:448268..448613Clytia hemisphaericaexon
TCONS_00067232-exon-scaffold_466-1510915933:446977..447754TCONS_00067232-exon-scaffold_466-1510915933:446977..447754Clytia hemisphaericaexon
TCONS_00067232-exon-scaffold_466-1510915933:444777..445973TCONS_00067232-exon-scaffold_466-1510915933:444777..445973Clytia hemisphaericaexon
TCONS_00067232-exon-scaffold_466-1491911889:448268..448613TCONS_00067232-exon-scaffold_466-1491911889:448268..448613Clytia hemisphaericaexon
TCONS_00067232-exon-scaffold_466-1491911889:446977..447754TCONS_00067232-exon-scaffold_466-1491911889:446977..447754Clytia hemisphaericaexon
TCONS_00067232-exon-scaffold_466-1491911889:444777..445973TCONS_00067232-exon-scaffold_466-1491911889:444777..445973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:444777..448613 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.24061	10.4991	10.4682	8.47674	1.02355	0.647059	0.863868	1.02804	0.867152	0.431036	1.21981	0.914178	0.859248	0.942339	1.28407	1.07685	1.1287	2.21567	0.446421	0.589202	1.00704	0.564157	7.90201	5.26514	1.10016	1.65791	0.59302	0.825093	2.96003	4.22223
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top