XLOC_042000 (gene) - C. hemisphaerica

Overview
NameXLOC_042000
Unique NameXLOC_042000
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_466:444777..448613-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042000 ID=XLOC_042000|Name=XLOC_042000|organism=Clytia hemisphaerica|type=gene|length=3837bp|location=Sequence derived from alignment at scaffold_466:444777..448613- (Clytia hemisphaerica)
TTTCAGTGAAAAAAAAAACAATCCAAAAAAATGAGTAAAAGGAAAAACAA
AGACCTTTCGGCGTTTACTCCAAAGCTTGAAGGCGATGGAAAACATCCTA
AGATGTTGAAAGGAGTAACAAACGAGAAACGAAAAGAAAAATTGATTCCG
TTCGATTTTGATGAAAATGATTGTGACGTCATCATCGAAGCAAAAGACAA
AGAAGTTCACTTACCGTCCAGTTTCTTGGAGATGGTATCTGGTGGACGGA
CTTTGCCAATGATTTCTAAAACAGATGTTACTTCGGAACGATTGATCAAA
GTTTTGTCATTTTATTGTCCAAAGATCTCTACCAACAAGCTTGAGTGTAA
GCATTAAACTCTTTTTTATAAGGAACCTTAACTTGGTTCCAAGCCTGGAG
TTCCTTATTTTTCAGATAATTCCAGCCTCAAAGTTCCTTATTGAATTTCT
TGGCTGTTAAGATTGGATTTGCTAAGTATGTGACTTATATATAAGTATAA
CAAAGGACTGCAGTACAGAAAAAGACGTTTATTGAATGTTGCTTCGTCAA
TATTTTGTCATCTTTTTGTTTAGGCTTTTGTAAATGCGTGCAAGTTCAAG
TTTAACTCTTTGTTCTTTAACAAAGCCTGAGCAGTTCCTTAACAATTCCT
TATTTTTCGATCCATTTTTCGCCTCAAGTTCTTTATAACTTGTAATTTAC
AGTTTCTTGGTTTACCATCAATATTTAAATTTTGCTGAGATTTTAAGAAG
CTCAGTCGAAATCTTTGGCATAAATGTGTGGCCCTGAATGAAATCTCCCA
CGGTTCCTACGGAACAATTTCATTCTTTGAGAAATAATGTATTCTTTTAC
ATTTTACAGTTTGCAATGTAGCGGAAGTTGACGATTTATTCAAAATCAGC
ACAACACTCCATTTGAAAATGTTTCAAGATTATTTGTTGGAGCAAATCGA
TGTAAAGTATATTGAAAGTTGTCAGAATTTCAACGAGGATCTGCTCGTAA
TATTAAATGTTTTTCACAAGTATGACATCCAGGGGTATGTTCGTCAAATC
ATGATAAAAGAAATGATCTTGGAAACTTTAAACCATTCACTGAAACCATC
TTTTAAAACTCTGGATAAAAAACTACAAATGGAAATTATCAAAAATTCTG
TTCTCAAAGTTTATCATAGTAAATTCAAGAGCGGGTTTACTGATGCCAGC
ATGATTTTCAATTTCTTCGAATTGATTTTACACGAGGATCGAGTTGTTGA
TTTATCAGTGAAAAAAGACTTTCTTGAACCTTTGAAAAGTNCATGATTTT
CAATTTCTTCGAATTGATTTTACACGAGGATCGAGTTGTTGATTTATCAG
TGAAAAAAGACTTTCTTGAACCTTTGAAAAGTCCCAACATTGACATTGAC
TTAGAATCAATTACTTGTCCAAAAAATTCTCCAAATTGTATCACTTTGGT
TGTAGAGGAAAGGAGATTCACGTCAATTCTTTTATACTTACCAATAATTC
TCCAGTGTTCAAAGCAATGTTGAGTTCAACACATTTCATAGAAGGTCAGA
GTAGAAGAATCGACTTGCCTGGCAAGAAATTGACACATGTTGCATGCCTT
TTGCACCATTTAGCCTCACTTTGTCACTCTTTTAACTGTAAGTACTTTTG
CAACATTTAGCCTCGCTTGTCTCTCTTTTAACTGTTTTTTTTATAAGCAT
TGCACTTATAAGCATATCTAGGCTCAGATATGCGGAAAAATTAAGCATAT
GGCAAGCATTACTTGAGCCTACGAAAAATGTTTTTTTCCTGATTTTGGCT
TTTTTTGGCTGGAATTTTACGGATTTTCAGTATTTCCCTGAATTTATGCT
TTAGATTTAAGCATCCCCTCAAGCATTTTCAGCCTTATTAAGCTTTCGAA
CTAAGCATCTCTGAGCCTGTTTTCGGATTTTTGTATGCTTATAAAAAAAA
ACATGTAGTACAAATAAAGCAAAAAATAATGGAGGGAACAAATTTTAGTT
TATACAAACTATAAATCTTCGGCCTTCACAAACCATGGTTTCACTTGGAA
ATTAGATCGTTCTTTTGATATACTGAGCTAATAACAGTTGAAAAAGAAGT
TTTCAGCAGGGTATCCCTTACTCCTTATTTCATCAACAATTCTTGCAGTT
GAAATACACGTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATG
TTTCTTAAGAAATCGGTCTTTTGAGCCTTAAATGTTTCTTGCATGTTTCT
AAACTTTTTGACATAATCAGCCTATTTTTCATGCAAAGATTGGAAGGTTC
TAAAAAAACCGTGTTAAAAATGTTATTTTCTCATTCTCAGTCTCAGCATG
TTTCTTAGATGTTTCTTAGTTTTTAGGCATTCTGAGCTTCATGTTTCTTA
AAAGTGTGTTTCTTAAAAAAAAAAAAAACGTGTACCTTTCCTGACGAAAT
AGGCCCAAAATGAAATGTAAAAATTTTCGGTGACGGTATTTGGACCATTG
AAACCCCCCCTTCAATCATGCTATCGTGGCTTTCGCCTTAGGGGATGGAG
TTAGCAAGGCTGGCGTCCTTACCTCCCCATCTACCTATGTTTTTTTTTTC
AATCTTTGCATCTTTCAGAGTATTAATGATTACTTTTCAGATGAAAAAGA
CATGCTCATTTTGTCACCACTCTGCCAAGAATATCAAATCGATTGGCTGA
CAGATAAGGTTAAATCGTACATTTCGACCATTTCAACGTCAAAAAGCAAA
TCCTTACTCGAGTACCTTGTGATATCAGAGAAGATGGGGNGACCATTTCA
ACGTCAAAAAGCAAATCCTTACTCGAGTACCTTGTGATATCAGAGAAGAT
GGGTTTTAATAAACTGGAAGAGGGACTGACCAATCAAATTTCTGAGCCAT
TTCCGGTTCTACAAATGTGTGTGGAATTTTCGAAGCTCAATCGACGAATT
CAAATCTTAATTGCCAGAAAATGTCTTTGGAAACTCTTGAAGGGTAATAA
GGTTGATGCGAGCATCATAGACCATGCTTTGGTATCAATCTTCAGTGAAT
TCGAACAAAATCTCTTGGAAGAAACACTCAGTCAAGTTGCAATAATGTCG
GAAATTAATCTTGCGAAGATAACTCCAATACCATATACCTTGATGAAAAG
TACTTTCAGAAAGAGCAGATAAAGAATAGATTGATTCTTATTTTATTGTT
ACTGATGGTAACCAGAACCAGATATTGAACCGATGTAACGGAAAAAGAGT
CTCAATTTGATCGATATTCAGGCTAATACACCCCTGTCTCAGTGCCCGGT
AAAACTTTCTGCCACGCTGAGGATGACAATGTATATCGAAATCCAAATGT
GGATAAAAATTATTTTGTTACCAGCTCCAAAAATCCAATGCAAATGGTTT
TCGAGTATATTTTTTTTCGTTGCACATCGAAGTCATTTTCCCAGTGGGGG
TTGATTATGTTAGTGTCTTTTTTTTCTAACAGGGAACAAAATTTCGGTCA
GAATTTCCAGTTTAGTGGAGGTCACACCGGGTCTATGACACGGGGTATGG
CTAAACACCGTATTCGAATTCAGATGTTATGTGCTTGAAACGAGATTTTA
TATTCCAAATTCTTAGAATATCATTTCCTTAGAATGTTTTCCTTTTCCTT
TAGCTTGGATACCCAAAACATTGTATACTGTAGATTGTTAACCTTTTTCT
CTCGGATATATTTTCAAACGGGAAACCATAAAGATATCACTTTCTTCCTG
GATTATTTTATTCTTTAAGTTAAACCCTAAAATATCGCAATTTTACCTTG
AAAATAGAACAATTATAGGCTCAAAGGGAAATAAAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067232TCONS_00067232Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067232-proteinTCONS_00067232-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:444777..448613 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.43 tpm) - - (10.5 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.24	10.5	10.47	8.48	1.02	0.65	0.86	1.03	0.87	0.43	1.22	0.91	0.86	0.94	1.28	1.08	1.13	2.22	0.45	0.59	1.01	0.56	7.9	5.27	1.1	1.66	0.59	0.83	2.96	4.22