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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067222 ID=TCONS_00067222|Name=TCONS_00067222|organism=Clytia hemisphaerica|type=transcript|length=3139bpRun BLAST on NCBI protein sequence of TCONS_00067222-protein >TCONS_00067222-protein ID=TCONS_00067222-protein|Name=TCONS_00067222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=781bp MTVDKISIRSFLQAAEVGDLKKLENFLSKTIDVNVVNEQSQTALHLAAANRun BLAST on NCBI transcript from alignment at scaffold_466:285459..296385- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067222 ID=TCONS_00067222|Name=TCONS_00067222|organism=Clytia hemisphaerica|type=transcript|length=10927bp|location=Sequence derived from alignment at scaffold_466:285459..296385- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_466:285459..296385- >TCONS_00067222 ID=TCONS_00067222|Name=TCONS_00067222|organism=Clytia hemisphaerica|type=CDS|length=32844bp|location=Sequence derived from alignment at scaffold_466:285459..296385- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067222 vs. Swiss-Prot (Human)
Match: ANKS6 (Ankyrin repeat and SAM domain-containing protein 6 OS=Homo sapiens GN=ANKS6 PE=1 SV=2) HSP 1 Score: 200.675 bits (509), Expect = 4.601e-53 Identity = 122/354 (34.46%), Postives = 194/354 (54.80%), Query Frame = 2
Query: 119 NVVNEQSQTALHLAAANGRQNAVRFLVTKGASLEFPNWCGWTALMYASYYGHSEIVSYLIENKAQVNACNSRLVTPLICAARCGKTAVIEILLQNGAYIVPKVVEKTPTSQLSNKEPNMPTPVWRPPMTALMAAAQHGHHGICSMLMTYNAPIDYQNEANGYTALMLAAVNGHAKIVELLIQTGSADANIVNCRNQTAYVLSILRKRTDVENYLKSRTTRVTKEITTKSHQPPIIQAARTGNIQEVEKILRANPKPDLNVSSTDGVTPLIFASLNNHIDVVRLLLREDAKTDLQEE-NGWTALMHATIKRNVDIVKLLLRAGADTKIKNNKNLTVFDLATLAGLP--QITRLFA 1171
+ +E TAL AAA G + VRFL+ +GAS+ N GW+ALM A+ +GH + L+++ A VNA N + L A+R G V+++LL+ GA+ V P+ + + P+ +TALMAA QHGH + +LM + A ++ G++ LMLAA+ G + + L++ G A+ + ++ +TA+ +++ K D+ +YL TT V + + +P I A + GN Q V++I +P +N+ + DG TPL+ A++ + +V+LL+ A D Q+ +GWTALM AT N +IVK LL GAD ++ T FDL L P ++ RL A
Sbjct: 72 DCSDEAGNTALQFAAAGGHEPLVRFLLRRGASVNSRNHYGWSALMQAARFGHVSVAHLLLDHGADVNAQNRLGASVLTVASRGGHLGVVKLLLEAGAF----VDHHHPSGEQLGLGGSRDEPL---DITALMAAIQHGHEAVVRLLMEWGADPNHAARTVGWSPLMLAALTGRLGVAQQLVEKG-ANPDHLSVLEKTAFEVALDCKHRDLVDYLDPLTT-VRPKTDEEKRRPDIFHALKMGNFQLVKEIADEDPS-HVNLVNGDGATPLMLAAVTGQLALVQLLVERHADVDKQDSVHGWTALMQATYHGNKEIVKYLLNQGADVTLRAKNGYTAFDLVMLLNDPDTELVRLLA 415 The following BLAST results are available for this feature:
BLAST of TCONS_00067222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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