Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067220 ID=TCONS_00067220|Name=TCONS_00067220|organism=Clytia hemisphaerica|type=transcript|length=2003bp
TTCTGTTTGTGATTAAGTTTCGTCTGtttaaaataaagtttaaatttttt
aaatcgttTAATTTAACCTCGTTAGTGTTTTTATTTGATTCCTTCTTTAT
TATAAACGCAAATTACAACaacttatttttgttttctttaattGTATTGT
TTTGTCCAATTTAGGGAGAAATTTAAATAAACCAAATTGGCATATTCCGG
GAAATGTTGTGATGAACTTTTAGTACAGTTACAGTCAACAAGTATAATAC
GATGACTTGACATACTGGTGAGGTTGTTATCAGATTGCAACAAAAGGATG
GAGGACCGCGGCTCTCAAATCTTCACCGTAGTTAAGCTAGCGATATCGTT
AACGTTGTTATGTTTCCTCTTACATACGCTATATCTATTACGTAGTTCAC
TCATCCATCTAAAGTGTGACCCGTACGATCATAGATGTTCGGTGACGCTC
GCCGGAGAAGATATTACCGATGATGTAACGACAACGACAGCGAATGTCGT
TCAAAATGACAAACGACCGAAAATCTTAATATTCTCGTTACCGCGTTCGG
GGTCGTCGTTTTTCGGTGAAATGTTCAATCGTGAAGACGAAtcattttat
ttgtttgaaCCATTACATGCAAGTGAAGCGTTAACAACCTTAACACCGAG
CTCCTCCAAACAGGCACATGACGCGGCCGGGAATACTCAAGTAGTACAAA
GACTTAATGATTTGTACAAGTGTGATTTCAGAGAACACGAATATCTATTC
CGTTTAATATCTTACCCGGAATTCAGTAACCCTCATTTTCGGCTTATGAG
TAAAGTGCTAGCTTCGCCGCCATTTTGTGATTATGTAATGAATTCAAATG
CAACGGAAGCCGAGTATCGTAAACATTGCAGAACGGTCGACACTCGAACT
CTAATGGGGATATGCGCTAACAAAGATATGGTTGTTATTAAGGAGCTTAT
GCACAGGTTACCAGTATACAGCCCTAAAGACATGTCTCTATTACTCCAAg
tggaaaatctgaaaacaatATGGCTTGTTCGTGACCCACGTGCTATTATT
GCCTCGATGATTTCAATGGGTTGGATAACAAAGACCAAAACTCAAACATT
CGAGCAAGTTTTCGAATCTACAACAAATAAAGTATGTCAACTTTACGAAC
AGTTTTTAGTAACGATGTCTTTGATGCCGGAGCGATATCGTCAAATGTTG
AACGTACTCCGTTATGAGGATCTAGTAACGAGACCACGTGACGTTGTGCT
ACAAATCATCCAACTTACCGACGGTGTGATTGCGGAAAAGTCGTTAGAAT
GGATTGTACGTAATACGCAAGAAGAATCAACATCCTACACAACTGAACAA
GAGGATAGCTACTCGGTTTACGGTAGAAATGCTACCTATTCGATGAcgtc
atggcgttctaaattcaaTTTACAACAAATCTTTCTGATTCAAGGCCATT
GTCGTCATTTTATGGATCGGCTGGGTTATAACCATTTCTGGGAAAACAAA
ACGCTAACTGACTTGAGTATACCATCTTATAGGACTGTTAACAGATTCTA
AACCTTTGAGCTGAAATGCTAAAAGCGCCACATGGTTTAAAGGCAACCCC
ACGACTTATAGGACCATTGCTTTTTCGCCTTCTGTTTTATATCGGAACAA
TTTATAAGAAATTTGGTTAAATCCTAAAAATTAATGCTATAAAAAATCTT
AGTCACCGAGTTTACCACAACAAAACTGATTTTAAGCGATTTTTTGTGTT
TGAAGATAAAGCCTTTGTGTTCGATTCTGCCGTTAAGCGTAATTGACTAT
TTGATTATGATGTGACGtcagaattttttaaatagGGGTTGATTAAATGA
tgtttcttttacaaaaaattccGATTATCAAAATTTGGGATAATCTATAG
ACTTCCACTAAACCCTCATTATCTGAAAAAGATATTTTAGGTCCCTAAAG
TTTAATTACCGTCTTCACATAAGTCTTAATATTCTCTTCATCTATTCGTT
GCG Run BLAST on NCBI protein sequence of TCONS_00067220-protein >TCONS_00067220-protein ID=TCONS_00067220-protein|Name=TCONS_00067220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MEDRGSQIFTVVKLAISLTLLCFLLHTLYLLRSSLIHLKCDPYDHRCSVT
LAGEDITDDVTTTTANVVQNDKRPKILIFSLPRSGSSFFGEMFNREDESF
YLFEPLHASEALTTLTPSSSKQAHDAAGNTQVVQRLNDLYKCDFREHEYL
FRLISYPEFSNPHFRLMSKVLASPPFCDYVMNSNATEAEYRKHCRTVDTR
TLMGICANKDMVVIKELMHRLPVYSPKDMSLLLQVENLKTIWLVRDPRAI
IASMISMGWITKTKTQTFEQVFESTTNKVCQLYEQFLVTMSLMPERYRQM
LNVLRYEDLVTRPRDVVLQIIQLTDGVIAEKSLEWIVRNTQEESTSYTTE
QEDSYSVYGRNATYSMTSWRSKFNLQQIFLIQGHCRHFMDRLGYNHFWEN
KTLTDLSIPSYRTVNRF Run BLAST on NCBI transcript from alignment at scaffold_466:281464..284145- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067220 ID=TCONS_00067220|Name=TCONS_00067220|organism=Clytia hemisphaerica|type=transcript|length=2682bp|location=Sequence derived from alignment at scaffold_466:281464..284145- (Clytia hemisphaerica)
TTCTGTTTGTGATTAAGTTTCGTCTGTTTAAAATAAAGTTTAAATTTTTT
AAATCGTTTAATTTAACCTCGTTAGTGTTTTTATTTGATTCCTTCTTTAT
TATAAACGCAAATTACAACAACTTATTTTTGTTTTCTTTAATTGTATTGT
TTTGTCCAATTTAGGGAGAAATTTAAATAAACCAAATTGGCATATTCCGG
GAAATGTTGTGATGAACTTTTAGTACAGTTACAGGTATGTTGAATTTATT
TTGAATTTTCCTTTAAAAATGCATTTATCTATATACATTGCTTGAGATAC
AACGACTTGAATAGGCCATTTCATTTTAGATCCATAGAGTTGGGTGGACA
AACATTTCCAAAGGGTAATTTGAGGGGTGTTTTTTCAGTTTTCCAAGGGG
GTAAAAAGTTATTCAAAAATTTCCAGGGGTTAAAAGACTGATTATAGTCC
GTCCACCCTCGCTTTAAGATATGAAAAGAATTTTTCCAAGGTGTATTTTT
GCAAATTTTGCCTTTTTCCAGGGGGTATCCACACATTTTCAAGAATTTCT
CTTTGACTTGAAAAAGTTCGTCCACCCTACTGTATGGTTTTTTTATGGAA
CAGTCCAATTTTTCTGTTGAGTATCTTCAGCCCTTTTATAAAAGAAAGAA
TTGACTATACTTTTCCCCCCTAAGCGAGAACTGTTCTTTTTGGAAAACAT
GCTTCGAACTATTGTTATATTGGGAGATGCCAATGTAAAATATAAATTGT
AACGTGCCTCCTCATTTGTTGATTATCCCCCCCCCCAATCTCTCAGTCCC
TTTAGGATCTTCCTCCCTGACGTAATCCCTGATTTTGCAATGAAAGATAT
TGTAAGTTTACTTCTGAAAACGCAATGAATCATTAAAGTTCTGAAATTTT
CTTTATATTTCAGTCAACAAGTATAATACGATGACTTGACATACTGGTGA
GGTTGTTATCAGATTGCAACAAAAGGATGGAGGACCGCGGCTCTCAAATC
TTCACCGTAGTTAAGCTAGCGATATCGTTAACGTTGTTATGTTTCCTCTT
ACATACGCTATATCTATTACGTAGTTCACTCATCCATCTAAAGTGTGACC
CGTACGATCATAGATGTTCGGTGACGCTCGCCGGAGAAGATATTACCGAT
GATGTAACGACAACGACAGCGAATGTCGTTCAAAATGACAAACGACCGAA
AATCTTAATATTCTCGTTACCGCGTTCGGGGTCGTCGTTTTTCGGTGAAA
TGTTCAATCGTGAAGACGAATCATTTTATTTGTTTGAACCATTACATGCA
AGTGAAGCGTTAACAACCTTAACACCGAGCTCCTCCAAACAGGCACATGA
CGCGGCCGGGAATACTCAAGTAGTACAAAGACTTAATGATTTGTACAAGT
GTGATTTCAGAGAACACGAATATCTATTCCGTTTAATATCTTACCCGGAA
TTCAGTAACCCTCATTTTCGGCTTATGAGTAAAGTGCTAGCTTCGCCGCC
ATTTTGTGATTATGTAATGAATTCAAATGCAACGGAAGCCGAGTATCGTA
AACATTGCAGAACGGTCGACACTCGAACTCTAATGGGGATATGCGCTAAC
AAAGATATGGTTGTTATTAAGGAGCTTATGCACAGGTTACCAGTATACAG
CCCTAAAGACATGTCTCTATTACTCCAAGTGGAAAATCTGAAAACAATAT
GGCTTGTTCGTGACCCACGTGCTATTATTGCCTCGATGATTTCAATGGGT
TGGATAACAAAGACCAAAACTCAAACATTCGAGCAAGTTTTCGAATCTAC
AACAAATAAAGTATGTCAACTTTACGAACAGTTTTTAGTAACGATGTCTT
TGATGCCGGAGCGATATCGTCAAATGTTGAACGTACTCCGTTATGAGGAT
CTAGTAACGAGACCACGTGACGTTGTGCTACAAATCATCCAACTTACCGA
CGGTGTGATTGCGGAAAAGTCGTTAGAATGGATTGTACGTAATACGCAAG
AAGAATCAACATCCTACACAACTGAACAAGAGGATAGCTACTCGGTTTAC
GGTAGAAATGCTACCTATTCGATGACGTCATGGCGTTCTAAATTCAATTT
ACAACAAATCTTTCTGATTCAAGGCCATTGTCGTCATTTTATGGATCGGC
TGGGTTATAACCATTTCTGGGAAAACAAAACGCTAACTGACTTGAGTATA
CCATCTTATAGGACTGTTAACAGATTCTAAACCTTTGAGCTGAAATGCTA
AAAGCGCCACATGGTTTAAAGGCAACCCCACGACTTATAGGACCATTGCT
TTTTCGCCTTCTGTTTTATATCGGAACAATTTATAAGAAATTTGGTTAAA
TCCTAAAAATTAATGCTATAAAAAATCTTAGTCACCGAGTTTACCACAAC
AAAACTGATTTTAAGCGATTTTTTGTGTTTGAAGATAAAGCCTTTGTGTT
CGATTCTGCCGTTAAGCGTAATTGACTATTTGATTATGATGTGACGTCAG
AATTTTTTAAATAGGGGTTGATTAAATGATGTTTCTTTTACAAAAAATTC
CGATTATCAAAATTTGGGATAATCTATAGACTTCCACTAAACCCTCATTA
TCTGAAAAAGATATTTTAGGTCCCTAAAGTTTAATTACCGTCTTCACATA
AGTCTTAATATTCTCTTCATCTATTCGTTGCG Coding sequence (CDS) from alignment at scaffold_466:281464..284145- >TCONS_00067220 ID=TCONS_00067220|Name=TCONS_00067220|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_466:281464..284145- (Clytia hemisphaerica)
ATGGAGGACCGCGGCTCTCAAATCTTCACCGTAGTTAAGCTAGCGATATC
GTTAACGTTGTTATGTTTCCTCTTACATACGCTATATCTATTACGTAGTT
CACTCATCCATCTAAAGTGTGACCCGTACGATCATAGATGTTCGGTGACG
CTCGCCGGAGAAGATATTACCGATGATGTAACGACAACGACAGCGAATGT
CGTTCAAAATGACAAACGACCGAAAATCTTAATATTCTCGTTACCGCGTT
CGGGGTCGTCGTTTTTCGGTGAAATGTTCAATCGTGAAGACGAATCATTT
TATTTGTTTGAACCATTACATGCAAGTGAAGCGTTAACAACCTTAACACC
GAGCTCCTCCAAACAGGCACATGACGCGGCCGGGAATACTCAAGTAGTAC
AAAGACTTAATGATTTGTACAAGTGTGATTTCAGAGAACACGAATATCTA
TTCCGTTTAATATCTTACCCGGAATTCAGTAACCCTCATTTTCGGCTTAT
GAGTAAAGTGCTAGCTTCGCCGCCATTTTGTGATTATGTAATGAATTCAA
ATGCAACGGAAGCCGAGTATCGTAAACATTGCAGAACGGTCGACACTCGA
ACTCTAATGGGGATATGCGCTAACAAAGATATGGTTGTTATTAAGGAGCT
TATGCACAGGTTACCAGTATACAGCCCTAAAGACATGTCTCTATTACTCC
AAGTGGAAAATCTGAAAACAATATGGCTTGTTCGTGACCCACGTGCTATT
ATTGCCTCGATGATTTCAATGGGTTGGATAACAAAGACCAAAACTCAAAC
ATTCGAGCAAGTTTTCGAATCTACAACAAATAAAGTATGTCAACTTTACG
AACAGTTTTTAGTAACGATGTCTTTGATGCCGGAGCGATATCGTCAAATG
TTGAACGTACTCCGTTATGAGGATCTAGTAACGAGACCACGTGACGTTGT
GCTACAAATCATCCAACTTACCGACGGTGTGATTGCGGAAAAGTCGTTAG
AATGGATTGTACGTAATACGCAAGAAGAATCAACATCCTACACAACTGAA
CAAGAGGATAGCTACTCGGTTTACGGTAGAAATGCTACCTATTCGATGAC
GTCATGGCGTTCTAAATTCAATTTACAACAAATCTTTCTGATTCAAGGCC
ATTGTCGTCATTTTATGGATCGGCTGGGTTATAACCATTTCTGGGAAAAC
AAAACGCTAACTGACTTGAGTATACCATCTTATAGGACTGTTAACAGATT
CTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067220-exon-scaffold_466-1575043694:283912..284145 | TCONS_00067220-exon-scaffold_466-1575043694:283912..284145 | Clytia hemisphaerica | exon |
| TCONS_00067220-exon-scaffold_466-1575043694:281464..283232 | TCONS_00067220-exon-scaffold_466-1575043694:281464..283232 | Clytia hemisphaerica | exon |
| TCONS_00067220-exon-scaffold_466-1510915933:283912..284145 | TCONS_00067220-exon-scaffold_466-1510915933:283912..284145 | Clytia hemisphaerica | exon |
| TCONS_00067220-exon-scaffold_466-1510915933:281464..283232 | TCONS_00067220-exon-scaffold_466-1510915933:281464..283232 | Clytia hemisphaerica | exon |
| TCONS_00067220-exon-scaffold_466-1491911889:283912..284145 | TCONS_00067220-exon-scaffold_466-1491911889:283912..284145 | Clytia hemisphaerica | exon |
| TCONS_00067220-exon-scaffold_466-1491911889:281464..283232 | TCONS_00067220-exon-scaffold_466-1491911889:281464..283232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:281464..284145 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008146 | sulfotransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008146 |
sulfotransferase activity |
Blast
BLAST of TCONS_00067220 vs. Swiss-Prot (Human)
Match: CHST1 (Carbohydrate sulfotransferase 1 OS=Homo sapiens GN=CHST1 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 5.242e-19 Identity = 96/360 (26.67%), Postives = 155/360 (43.06%), Query Frame = 1 Query: 511 KRPKILIFSLPRSGSSFFGEMFNREDESFYLFEPLHASEALTTLTPSSSKQAHDAAGNTQVVQR---LNDLYKCDFREHEYLFRLISYPEFSNPHFRLM----SKVLASPPFCDYVMNSNAT--EAEYRKHCRTVDTRTLMGICANKDMVVIKELMHRLPVYSPKDMSLLLQVE--NLKTIWLVRDPRAIIAS----------MISMGWITKTKTQTFEQVFESTTNKVCQLYEQFLVTMSLMPERYRQMLNVLRYEDLVTRPRDVVLQIIQLTDGVIAEKSLEWIVRNXXXXXXXXXXXXXXXXXVYG--RNATYSMTSWRSKFNLQQIFLIQGHCRHFMDRLGYNHFWENKTLTDLSI 1521
++ ILI + RSGSSF G++FN+ + FYLFEPL+ + TL P ++ A + L LY CD +L I P ++ R+ S+VL S P CD ++ E + + C ++ C + V IK + R+P + D+ L++ NLK I LVRDPR I+AS + + + T K + V + TT VC+ + + T + P + ++RYEDL P +I + WI NT+ + T + YG RN+ + WR + + + Q C+ + +LGY + L + S+
Sbjct: 59 RKTHILILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQ--NTLIPRFTQGKSPADRRVMLGASRDLLRSLYDCDL---YFLENYIKPPPVNHTTDRIFRRGASRVLCSRPVCDPPGPADLVLEEGDCVRKCGLLNLTVAAEACRERSHVAIKTV--RVPEVN--DLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLD-VTQLTT--VCEDFSNSVSTGLMRPPWLKGKYMLVRYEDLARNPMKKTEEIYGFLGIPLDSHVARWIQNNTRGDPTLGKHK-------YGTVRNSAATAEKWRFRLSYDIVAFAQNACQQVLAQLGYKIAASEEELKNPSV 399
The following BLAST results are available for this feature:
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