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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067210 ID=TCONS_00067210|Name=TCONS_00067210|organism=Clytia hemisphaerica|type=transcript|length=1769bp
NTGCCATCAGCTGTAACCGAGGAAGAGGAAAAGGAAGAGGAAGACGAATT
CGAACAGGTggaaaatatagaaattttcttcaattttttgagGGGGAGAG
AGGCAAGGAAAACATTACCTACTTTGACCCCTGTTGTTGTTGTACCCACT
ATGACAGCTCAAGAATCTGTGAGGGAGATGAGCAAGTTGTCTAGCGcaga
tattgatttttttgagaCACCACTCATACATCTGGTACAGAATGGACCTA
CAGTTGATGATTCGAGCAGGCCTGTTTGTACCTTCGACGGTTCGGCGGTA
CCTTCTCATCCCGTTGGTGATTCGAGCCCGGAGGCTCACCCAGTACTAGA
CTCGAGCGGGTACTTCCGTACAATTAACGGTGGGCTGATGGATGATTCGA
GCAGGCCTGTTTGTACTTTAGATGATGCGGAGGTACCTCCTCATTCCGTT
GGAGGTTTGAGTCAGAGGGCTCACAGTGAGGACTCGAGCGGGTACTTTCA
CCCTGATAACGATGGTTTGCAAGAACAGTTTGATGTTGACGATGACGATG
AGGATGTGCTTCTAGAAGAATCGGGTCATCATGGTGTCTCCCCTATCACG
TCAGATCAATCATTGAATAATACTCAAGATGAAGTCTCAGACAGCTCCGA
GGACGAAGTTGAGGATTCCACATCAAGCAACCAACTCGCATACGATGAAT
GTCTTCAACTTTATCAATTTGGTCGTCCAAAACGCATTAGGAAACCAAAG
AAGTTTCTCACCTATGACAAACGTGGTGTACCCTCCTATGTTTATGCCCA
GGCCATCCCCCCTAATAAATGATTTCATGATTTTGCTTCAGGAGTTTGTG
TTACATGTTGTGGTTCAAATGTATTCTAATTAAATTCAAACtctttttcg
tttcaaattggTCAACAAACCCCTTGCCCAACAACTGATGGTCGTCGATA
TGGATGTCACTTCAACACCACGTCGTCTCCTCACTGTGAATGCCCACCGC
CTCATGTGTGCCCACATCATCAAAGAGAACACCATGCCCCTTGTGATAGG
TCGACTGCTATCACCGATTGCACTGCAATGATGGACGGATCAATTACAAA
TGATTGTTTGCATTGAAAATTAAATAGTTTTGTCATTGGGACATGACTTT
CAAAGTGGGGGTGAATGTGGGAATCACTAAATCGATAGCtttatttttgc
gaagcgaatttatgagcgaagcagttttgctatattgtgcacgtaccttt
aacttctatcccaagcgaaaatttgctataaaatttgctatataaatcac
atcttcaaaccgatgattttatcaaaatgaccttgaatggtttggcttga
agccacgtaaactttctcggtttggtagctaggactgcgaaaaatgccgt
tttaaaatggtgtaccctagcagtgagcagcaacaaaattaccggaagcc
gaaacacggacttagaatttgaagttgatcaaattgccgcgcgggcggca
cgcatatctaagcaatctaagcagtggttcttcggtttttattttgctgt
taaatggaaaaaaatagtttgaacggtgacagaaaggatcttcatcatcc
cttgacttttaacagcaagtatcaaataaggtcaatcaatgagaggtttt
tgcaagtcgcacgggcgggaggagtgctctttttagtgaacgaaacttac
cttgcaaaaccaagtggatattctatgataaagaagtacggaggtaatca
aatttgtcgaatttgtcaN Run BLAST on NCBI protein sequence of TCONS_00067210-protein >TCONS_00067210-protein ID=TCONS_00067210-protein|Name=TCONS_00067210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
XPSAVTEEEEKEEEDEFEQVENIEIFFNFLRGREARKTLPTLTPVVVVPT
MTAQESVREMSKLSSADIDFFETPLIHLVQNGPTVDDSSRPVCTFDGSAV
PSHPVGDSSPEAHPVLDSSGYFRTINGGLMDDSSRPVCTLDDAEVPPHSV
GGLSQRAHSEDSSGYFHPDNDGLQEQFDVDDDDEDVLLEESGHHGVSPIT
SDQSLNNTQDEVSDSSEDEVEDSTSSNQLAYDECLQLYQFGRPKRIRKPK
KFLTYDKRGVPSYVYAQAIPPNK Run BLAST on NCBI transcript from alignment at scaffold_466:108843..110746- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067210 ID=TCONS_00067210|Name=TCONS_00067210|organism=Clytia hemisphaerica|type=transcript|length=1904bp|location=Sequence derived from alignment at scaffold_466:108843..110746- (Clytia hemisphaerica)
NTGCCATCAGCTGTAACCGAGGAAGAGGAAAAGGAAGAGGAAGACGAATT
CGAACAGGTGGAAAATATAGAAATTTTCTTCAATTTTTTGAGGGGGAGAG
AGGCAAGGAAAACATTACCTACTTTGACCCCTGTTGTTGTTGTACCCACT
ATGACAGCTCAAGAATCTGTGAGGGAGATGAGCAAGTTGTCTAGCGCAGA
TATTGATTTTTTTGAGACACCACTCATACATCTGGTACAGAATGGACCTA
CAGTTGATGATTCGAGCAGGCCTGTTTGTACCTTCGACGGTTCGGCGGTA
CCTTCTCATCCCGTTGGTGATTCGAGCCCGGAGGCTCACCCAGTACTAGA
CTCGAGCGGGTACTTCCACACAACCAACGGTGGGCTGAGTGATGATTCGA
GCAGGCCTGTTTGTATCTTAGACGATTCGGCGGTACCTCCTCATCCCATT
GGTGATTCGAGCCCGGAGGCTCACCGAGAACTAGACTCGAGCAGGTACTT
CCGTACAATTAACGGTGGGCTGATGGATGATTCGAGCAGGCCTGTTTGTA
CTTTAGATGATGCGGAGGTACCTCCTCATTCCGTTGGAGGTTTGAGTCAG
AGGGCTCACAGTGAGGACTCGAGCGGGTACTTTCACCCTGATAACGATGG
TTTGCAAGAACAGTTTGATGTTGACGATGACGATGAGGATGTGCTTCTAG
AAGAATCGGGTCATCATGGTGTCTCCCCTATCACGTCAGATCAATCATTG
AATAATACTCAAGATGAAGTCTCAGACAGCTCCGAGGACGAAGTTGAGGA
TTCCACATCAAGCAACCAACTCGCATACGATGAATGTCTTCAACTTTATC
AATTTGGTCGTCCAAAACGCATTAGGAAACCAAAGAAGTTTCTCACCTAT
GACAAACGTGGTGTACCCTCCTATGTTTATGCCCAGGCCATCCCCCCTAA
TAAATGATTTCATGATTTTGCTTCAGGAGTTTGTGTTACATGTTGTGGTT
CAAATGTATTCTAATTAAATTCAAACTCTTTTTCGTTTCAAATTGGTCAA
CAAACCCCTTGCCCAACAACTGATGGTCGTCGATATGGATGTCACTTCAA
CACCACGTCGTCTCCTCACTGTGAATGCCCACCGCCTCATGTGTGCCCAC
ATCATCAAAGAGAACACCATGCCCCTTGTGATAGGTCGACTGCTATCACC
GATTGCACTGCAATGATGGACGGATCAATTACAAATGATTGTTTGCATTG
AAAATTAAATAGTTTTGTCATTGGGACATGACTTTCAAAGTGGGGGTGAA
TGTGGGAATCACTAAATCGATAGCTTTATTTTTGCGAAGCGAATTTATGA
GCGAAGCAGTTTTGCTATATTGTGCACGTACCTTTAACTTCTATCCCAAG
CGAAAATTTGCTATAAAATTTGCTATATAAATCACATCTTCAAACCGATG
ATTTTATCAAAATGACCTTGAATGGTTTGGCTTGAAGCCACGTAAACTTT
CTCGGTTTGGTAGCTAGGACTGCGAAAAATGCCGTTTTAAAATGGTGTAC
CCTAGCAGTGAGCAGCAACAAAATTACCGGAAGCCGAAACACGGACTTAG
AATTTGAAGTTGATCAAATTGCCGCGCGGGCGGCACGCATATCTAAGCAA
TCTAAGCAGTGGTTCTTCGGTTTTTATTTTGCTGTTAAATGGAAAAAAAT
AGTTTGAACGGTGACAGAAAGGATCTTCATCATCCCTTGACTTTTAACAG
CAAGTATCAAATAAGGTCAATCAATGAGAGGTTTTTGCAAGTCGCACGGG
CGGGAGGAGTGCTCTTTTTAGTGAACGAAACTTACCTTGCAAAACCAAGT
GGATATTCTATGATAAAGAAGTACGGAGGTAATCAAATTTGTCGAATTTG
TCAN Coding sequence (CDS) from alignment at scaffold_466:108843..110746- >TCONS_00067210 ID=TCONS_00067210|Name=TCONS_00067210|organism=Clytia hemisphaerica|type=CDS|length=1644bp|location=Sequence derived from alignment at scaffold_466:108843..110746- (Clytia hemisphaerica)
GTACTTCCGTACAATTAACGGTGGGCTGATGGATGATTCGAGCAGGCCTG
TTTGTACTTTAGATGATGCGGAGGTACCTCCTCATTCCGTTGGAGGTTTG
AGTCAGAGGGCTCACAGTGAGGACTCGAGCGGGTACTTTCACCCTGATAA
CGATGGTTTGCAAGAACAGTTTGATGTTGACGATGACGATGAGGATGTGC
TTCTAGAAGAATCGGGTCATCATGGTGTCTCCCCTATCACGTCAGATCAA
TCATTGAATAATACTCAAGATGAAGTCTCAGACAGCTCCGAGGACGAAGT
TGAGGATTCCACATCAAGCAACCAACTCGCATACGATGAATGTCTTCAAC
TTTATCAATTTGGTCGTCCAAAACGCATTAGGAAACCAAAGAAGTTTCTC
ACCTATGACAAACGTGGTGTACCCTCCTATGTTTATGCCCAGGCCATCCC
CCCTAATAAATGANTGCCATCAGCTGTAACCGAGGAAGAGGAAAAGGAAG
AGGAAGACGAATTCGAACAGGTGGAAAATATAGAAATTTTCTTCAATTTT
TTGAGGGGGAGAGAGGCAAGGAAAACATTACCTACTTTGACCCCTGTTGT
TGTTGTACCCACTATGACAGCTCAAGAATCTGTGAGGGAGATGAGCAAGT
TGTCTAGCGCAGATATTGATTTTTTTGAGACACCACTCATACATCTGGTA
CAGAATGGACCTACAGTTGATGATTCGAGCAGGCCTGTTTGTACCTTCGA
CGGTTCGGCGGTACCTTCTCATCCCGTTGGTGATTCGAGCCCGGAGGCTC
ACCCAGTACTAGACTCGAGCGGGTACTTCCGTACAATTAACGGTGGGCTG
ATGGATGATTCGAGCAGGCCTGTTTGTACTTTAGATGATGCGGAGGTACC
TCCTCATTCCGTTGGAGGTTTGAGTCAGAGGGCTCACAGTGAGGACTCGA
GCGGGTACTTTCACCCTGATAACGATGGTTTGCAAGAACAGTTTGATGTT
GACGATGACGATGAGGATGTGCTTCTAGAAGAATCGGGTCATCATGGTGT
CTCCCCTATCACGTCAGATCAATCATTGAATAATACTCAAGATGAAGTCT
CAGACAGCTCCGAGGACGAAGTTGAGGATTCCACATCAAGCAACCAACTC
GCATACGATGAATGTCTTCAACTTTATCAATTTGGTCGTCCAAAACGCAT
TAGGAAACCAAAGAAGTTTCTCACCTATGACAAACGTGGTGTACCCTCCT
ATGTTTATGCCCAGGCCATCCCCCCTAATAAATGANTGCCATCAGCTGTA
ACCGAGGAAGAGGAAAAGGAAGAGGAAGACGAATTCGAACAGGTGGAAAA
TATAGAAATTTTCTTCAATTTTTTGAGGGGGAGAGAGGCAAGGAAAACAT
TACCTACTTTGACCCCTGTTGTTGTTGTACCCACTATGACAGCTCAAGAA
TCTGTGAGGGAGATGAGCAAGTTGTCTAGCGCAGATATTGATTTTTTTGA
GACACCACTCATACATCTGGTACAGAATGGACCTACAGTTGATGATTCGA
GCAGGCCTGTTTGTACCTTCGACGGTTCGGCGGTACCTTCTCATCCCGTT
GGTGATTCGAGCCCGGAGGCTCACCCAGTACTAGACTCGAGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067210-exon-scaffold_466-1575043694:110388..110746 | TCONS_00067210-exon-scaffold_466-1575043694:110388..110746 | Clytia hemisphaerica | exon |
| TCONS_00067210-exon-scaffold_466-1575043694:108843..110252 | TCONS_00067210-exon-scaffold_466-1575043694:108843..110252 | Clytia hemisphaerica | exon |
| TCONS_00067210-exon-scaffold_466-1510915933:110388..110746 | TCONS_00067210-exon-scaffold_466-1510915933:110388..110746 | Clytia hemisphaerica | exon |
| TCONS_00067210-exon-scaffold_466-1510915933:108843..110252 | TCONS_00067210-exon-scaffold_466-1510915933:108843..110252 | Clytia hemisphaerica | exon |
| TCONS_00067210-exon-scaffold_466-1491911889:110388..110746 | TCONS_00067210-exon-scaffold_466-1491911889:110388..110746 | Clytia hemisphaerica | exon |
| TCONS_00067210-exon-scaffold_466-1491911889:108843..110252 | TCONS_00067210-exon-scaffold_466-1491911889:108843..110252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_466 | supercontig | scaffold_466:108843..110746 - |
Blast
The following BLAST results are available for this feature:
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