TCONS_00067200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067200
Unique NameTCONS_00067200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067200 ID=TCONS_00067200|Name=TCONS_00067200|organism=Clytia hemisphaerica|type=transcript|length=1303bp
TTGCGCGCGaaagtaaaaaagtaaacaaaacctGCTTTCACTTTCCTTTC
TCTTTAGCTACCTGACATTGACATCTTCTTCAGTTCTTGTACgttatttt
gttttgacttttatCCATGGTCCATGATCCTTAGCTCGCTACCATATTAA
GAAGTTGAGAAATGGTTCAAATATTCCTAAAGCTTGGAGAAGACCCAAAA
GAATGGAGCATTGTTGAACTTCAAGGAACTTTGGAGAGCAGTGAAGAAGA
ATTATGTGGAAGTCATATCGGAAATTTACACTTTGATGATAAAGGTACGC
CTCAGCTAATTTGTGGTCACCACCTGGTGACAGGCAAGATTCAAAAACTC
GATAAACCATATGCAGTAATGAAGAAAAACAGTATTTCACATGGAATGAG
CGAGTCAATGGAAATCGATGATTCAGATGGTCAATCAACAGCCTACGATA
TTGTTGCTTTcgtcaaacaaaaaataatcttcAAAAATCGACCCAAACCA
ATAATTATCAAAACTCAACCAACAAAAACGTGATAGTGTGAGGCATTCTA
AAGGTGGCTTGATCTATATGATTTTGTTTCGCTCTCATTCAGTCAAATTT
GAGAATTCCGACCACTTCATAAAACTTTAGATAAAGCTGCACGGTGGATT
AAAGATGATGttcatgttaaaaacattttatttggaTTGCATAACAATTA
TCTAATATTATTTCTAGAAATATTAATCCTATTATTGTAAAacgggctct
tccagaaaatgttcgtacgtaggggttggaggatatagtgtccgggggta
gtgaaaaatctacaaaatttgccttgtccagggggtaaacttgctctgtt
ttgggggtaattttgctctgtttgagggtaatctTGAATGTCCAGGGTat
caactaatgcttgtccggggcTTAGACCTGCTGTAAAAAGTCACAATCTC
CGGAGggtaaaattccaaaaaaatgttatatcccccccccccccccccat
attcaaatttttctggATAAGCCCAATATAGTTAAGTGTAAAGTAACGAT
GAAAAAAAGTAGAATTTGATTTAAAGTATATCATTTTACCACAGTAATCT
TACTTACTGCTTGCGAGTGTTTGTAagccaaaaaattcaaaaacaacccT
GTTTATTTATTGACACATATAATAAACAAAATTAGTCTTTTTTGTGATCC
AGTAGAATTATACAGTATGACATACTATTATACCAAATTCTTGaaattag
agctttttaaaatttgatggatAACGCATCTAAAGGTCCGTTCTTAAAAT
TAA
Run BLAST on NCBI

protein sequence of TCONS_00067200-protein

>TCONS_00067200-protein ID=TCONS_00067200-protein|Name=TCONS_00067200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MVQIFLKLGEDPKEWSIVELQGTLESSEEELCGSHIGNLHFDDKGTPQLI
CGHHLVTGKIQKLDKPYAVMKKNSISHGMSESMEIDDSDGQSTAYDIVAF
VKQKIIFKNRPKPIIIKTQPTKT
Run BLAST on NCBI

transcript from alignment at scaffold_466:313779..321051+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067200 ID=TCONS_00067200|Name=TCONS_00067200|organism=Clytia hemisphaerica|type=transcript|length=7273bp|location=Sequence derived from alignment at scaffold_466:313779..321051+ (Clytia hemisphaerica)
TTGCGCGCGaaagtaaaaaagtaaacaaaacctGCTTTCACTTTCCTTTC
TCTTTAGCTACCTGACATTGACATCTTCTTCAGTTCTTGTACgttatttt
gttttgacttttatCCATGGTCCATGATCCTTAGCTCGCTACCATATTAA
GAAGTTGAGAAATGGTTCAAATATTCCTAAAGCTGTAAGTATTCTTGCTT
TAAGTACTtaaataccgtgagattgggtaacttgcatcagtggaggctaa
catgcatagcatagccctcaaataaaagacctggctggttattaaaatac
aactacgcagctccactcTCAGCTCttctctaccattttgttttgaatta
actttgtattttaatgaccagcctatgcatgttagcctccactgatgcaa
gttacccaatctcacgatATTCACCAGTATTCATCCTCTAGTATAGTTTC
CAGATAGACGTTTTGTGGTCGAACGCGACCAAATGgaacagtcttttgaa
taaacTAATAAACCAGCTGCACTAAGTCAGCCCAAATGGCTGAGACGATG
AAGTACAAATAAAAGACCAAGCTTTGAAGGGCGCCCCATTTGCTTGGAAc
gtttaagcaaaaaatgatgATTGGCGCACAATGGAATCCGTCCAAATCAG
ATGTCGATAGAACAATTTTCTGGtcttagaaaaattagaaagaaATCATT
TCATCATTCTTTGGCCTTTCTGATAGCTTTTACATGCGAGGGTACTAGTG
TTGCGAGCTGAGGAGTGGTCCACCAGCCTTTTGACCATtgcagttaggaa
catttggcgagctcctgtacgcggccgcaatcaaaaaaatcaaaacgtca
ctcattaaaaaatgacattcgtgtcttttcgcactttctTTAGCCTAgac
tagacgatgtagcaaacatagtaagtataagcataCTGTGCTTTCCATTG
GCTGAAGTTTTCTTTTGCGTTGGAAAAACTTTTccaaactttcagcgatg
attgaccaaactgttacaatgaaaattatccagcgcattttttatcttct
taccttcttcattttcaatgaagcacttgaagtttactgaaggtaagcac
ataatatattcttataattaattaTATATATTCATTTAAACACGCTTTGT
TGTGCACTGCGGTGGAGTGCacgacgtaactcgcgcggcaactaactcgc
cttctgttggaagatcatattgggcgttttggcgtcaCCACCCTCAATGC
AGTGGGCACCTTTGTCTTTCcacaactctttccaccattttagatggcct
taacaatagatccaaaagggcgccataatcttggaagaatAATTTGTTTT
gctctccggctttgggaagtagcaatgtttttggttgtttttcgatggaa
aatgctAAGAAatttaagtttacaagtgtcatttagtttttgctggctta
tagaatggcatgatcctggatggtttccctaactgccTTGGAACTTAGCA
GAacaaaaaaggaggaaaaaagtggaaatttttccgaccctttaTGTGAC
TTAAATATAAGTTTCTAATTTTCTCTACCCCTACAGGGACTGACAGGCTC
CAAAAAAGCATCCTTAAGGGTGATACATACCAGTATCTTTGCCTAGGTAC
TAAGTTTCGGTGGCAAGCAATGATAAAATGCAGAATATATGGATAGTTTA
GAAGCCAATACTCCTCTGTTTATTAAATTCAATGTggttttaaggctaaa
aattaGTATATCGATcacttttttagttttcaaaatcttgaaaaagatGT
CTGGCCGAAATTTAGTACATNctaaattgaaaatttctcccgtcggcgca
aaccatggttgtgcctcctcgttccccttttgaaaactattcacgctaat
tcacaattaatgctCATGGAACCCGTCAACGGGGGGACCAGGGGGCATGG
CCCATCATGTTGCTTGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctttgaacccttca
aaattcaaagaatttctccgttacccaaccatggtgggctttgtcaattt
actcaaatatacctcagccctcaaactggtgccctttgatgtgaccaggt
gtccaacaatttttgatatgcataagtcaagattacgtcatttttcctat
cgaaaaGACCcaaaaaaacacccctgtgtcaaaaatagaaaaacagaggt
aaaaatctagatttttcgCNAGCAGCAAGCTCGCGCTTGATCCAGCTTTA
GCTTTTAAAGTATCCTTGGAAAAGCCCATATACAGAAGAAACGGTCTACA
TGAAATGACAGTGATACAGAATTGTTCGAAGAAAAGAAAAGTTTCTTTAA
AACTCACTTTCTTTATAAGCTCTATTAtatttacaatttctttaataatt
aattataTTGATAACTTTaagaaaaaatacattttcttttattcttttta
ctATAATTATATGCCTCTTTTTATGTTatgtgttttttcttttctttagc
ttttactaagaaaaattattttcccgcGCTAAGCAATCCCGATAAATTGT
TTCCCGAAAATAATCCAAAATCGGAATTAAAAACAAATCCAAAGCACTTC
TTGGCAGCAGCGGCttgcaaaaaattttcaaaccgatttaaaaaacggcg
tgatggcgtgaaaatgaagtgccggcgtgatcgtgaaatctagttttttt
aggcgtgatggcgtgaaatttgtaGTTctgcgtgatcgtgaaaattatat
ttattagttgaatcgtatttctatgtccattttagccaatttagagggtt
tagatttcaaaattttcttggtcggccccaactatgNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTCAAAACCAAAACAGTGGTGTTTTCACCACATTTTGGACTT
TCTGTTCCGCCATTTCCATATAAAGCATGTTGTTCTTTCCATCCAGCAAG
CATGGTCCCGTCGTCCCACCATGCGCGGgtcatgcatgcaaactttaaaa
taagcgaggcaagacgtgccaacctcgtttccagactgttttcgaaaaga
cagtatgttttaaaaaagatagtatcgttttaaaatagatagtattgttt
aaaaaagatagtatcattacaaaagatagtatgttttaaacgagaatagt
attttttcaaacggaaatagtattttttcaacgaaaatagtatgttttaa
tcgaaaatagtatttttttaaaaagatagtatgttttaaacgaagatagt
attgttttaaagagatagtatgtatttccgctttggcgcgccatagagta
tttagttattcaaaagaccgcCGCGTTTGCCAAAACATCTATTAGGcaca
attttgaattgaaaagttttgtgtGAGAATATTCTAtctgtaataaaaaa
atcaaattatagaTATCAAGTTCAAGGTTCAAGTTTCAAGTTTATTTTCG
TTTTATGAGCTTTGTACATTTCAAAAATTCCTAACAGAAAAAAACCCTAA
GGGTTTACAAGGTCGACAGGAAATAAAAACTATAATaatatataccttaa
gggaagaaattttggtggctggaaagaaatttaaatttttagattcaaaa
TGGTATTGTGTCCTACTAAGGTTGGCTAATTGTATCCAATATACCTTCCC
GGTCCCCTAAAGGTCTATTCTCAATCTTAACCAAGAAGGTTTTTGGGATG
GATGATTTACTGATGAACCTCAATGTGATCATTTTGGGGCTTTTAGCTGT
TGTGTTGTGTGCTATAATGGAGGTAGAATCAAACCTTCAATGTTGAATAG
TTTTTTTGGATAACGCGGCGACCTAtttattgaataacaaattactccct
CAACCAATGAAAAATGTAGTAAATTATCTTCTCTCTAGGTAACTGTCGTG
GAGTAATAAGTTATTCAATAGGCCGTCATgctctccaaaacaactatttt
tTGCATTGGCGGCGCTTCACTGATTTTCTATTCTGGGAGGATTATTCCTC
ACTTTTAAGTTCAGTACTttcattgttttattatttgaagAAATATTCTT
TTAATGTTTAAGTGGAGAAGACCCAAAAGAATGGAGCATTGTTGAACTTC
AAGGAACTTTGGAGAGCAGTGAAGAAGAATTATGTGGAAGTCATATCGGA
AATTTACACTTTGATGATAAAGTAAGCTCCCTTTTTAGCATAAAGACACC
CATACCAATCTACAGTGTGCCTGGAATAAAAAGTGGAACAGAAATTCTAA
AATAAAGATGGATAAATCCATTATTTCTAACTATTAAATGtcatgaaaat
gaaataattatttcctttactttttttaaccctatttgatttttgtaacc
cggggggggggggggtagaatttATCACCctcaattattttttatctgaa
aatacATATGTTGGTACATATGTTCTCATCAAAGCGATGACTTCATGAct
aaatttccacctgtcggaaaaaagcaaaaagttatGGTTTAAAAAAATGT
CTGTCACAGTTTAACCAatataaagatattcaaattatGTTTGAAGATTC
TAGAGGATAAAAGGTTCCCCtgtaacataattgccggttttggaTTTTCC
ATAAAGACTTTTCTTTAAATcaatgctgaagatgagtaaaattttcaaaa
tttgtcacaAATGATGATATTTTGTAAAGTAGCTCAATGGTTGGGCAAAt
gcccgcgaatggcatggttgtgaaTTCGAGTCTCACCGGATCTGTTGGTT
TTCTAACGGTTCTAGTGGCTGGAAGAAGACAGCACGAGAGCGACTGTATT
TACTTCATATTGTAATACATAAGGgcattcattttgtaaaattaCTTTAA
TTTGCTTTTCCAGGGTACGCCTCAGCTAATTTGTGGTCACCACCTGGTGA
CAGGCAAGATTCAAAAACTCGATAAACCATATGCAGTAATGAAGAAAAAC
AGTATTTCACATGGAATGAGCGAGTCAATGGAAATCGATGATTCAGATGG
TCAATCAACAGCCTACGATATTGTTGCTTTcgtcaaacaaaaaataatct
tcAAAAATCGACCCAAACCAATAATTATCAAAACTCAACCAACAAAAACG
TGATAGTGTGAGGCATTCTAAAGGTGGCTTGATCTATATGATTTTGTTTC
GCTCTCATTCAGTCAAATTTGAGAATTCCGACCACTTCATAAAACTTTAG
ATAAAGCTGCACGGTGGATTAAAGATGATGttcatgttaaaaacatttta
tttggaTTGCATAACAATTATCTAATATTATTTCTAGAAATATTAATCCT
ATTATTGTAAAacgggctcttccagaaaatgttcgtacgtaggggttgga
ggatatagtgtccgggggtagtgaaaaatctacaaaatttgccttgtcca
gggggtaaacttgctctgttttgggggtaattttgctctgtttgagggta
atctTGAATGTCCAGGGTatcaactaatgcttgtccggggcTTAGACCTG
CTGTAAAAAGTCACAATCTCCGGAGggtaaaattccaaaaaaatgttata
tcccccccccccccccccatattcaaatttttctggATAAGCCCAATATA
GTTAAGTGTAAAGTAACGATGAAAAAAAGTAGAATTTGATTTAAAGTATA
TCATTTTACCACAGTAATCTTACTTACTGCTTGCGAGTGTTTGTAagcca
aaaaattcaaaaacaacccTGTTTATTTATTGACACATATAATAAACAAA
ATTAGTCTTTTTTGTGATCCAGTAGAATTATACAGTATGACATACTATTA
TACCAAATTCTTGaaattagagctttttaaaatttgatggatAACGCATC
TAAAGGTCCGTTCTTAAAATTAA

Coding sequence (CDS) from alignment at scaffold_466:313779..321051+

>TCONS_00067200 ID=TCONS_00067200|Name=TCONS_00067200|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_466:313779..321051+ (Clytia hemisphaerica)
ATGGTTCAAATATTCCTAAAGCTTGGAGAAGACCCAAAAGAATGGAGCAT
TGTTGAACTTCAAGGAACTTTGGAGAGCAGTGAAGAAGAATTATGTGGAA
GTCATATCGGAAATTTACACTTTGATGATAAAGGTACGCCTCAGCTAATT
TGTGGTCACCACCTGGTGACAGGCAAGATTCAAAAACTCGATAAACCATA
TGCAGTAATGAAGAAAAACAGTATTTCACATGGAATGAGCGAGTCAATGG
AAATCGATGATTCAGATGGTCAATCAACAGCCTACGATATTGTTGCTTTc
gtcaaacaaaaaataatcttcAAAAATCGACCCAAACCAATAATTATCAA
AACTCAACCAACAAAAACGTGAATGGTTCAAATATTCCTAAAGCTTGGAG
AAGACCCAAAAGAATGGAGCATTGTTGAACTTCAAGGAACTTTGGAGAGC
AGTGAAGAAGAATTATGTGGAAGTCATATCGGAAATTTACACTTTGATGA
TAAAGGTACGCCTCAGCTAATTTGTGGTCACCACCTGGTGACAGGCAAGA
TTCAAAAACTCGATAAACCATATGCAGTAATGAAGAAAAACAGTATTTCA
CATGGAATGAGCGAGTCAATGGAAATCGATGATTCAGATGGTCAATCAAC
AGCCTACGATATTGTTGCTTTcgtcaaacaaaaaataatcttcAAAAATC
GACCCAAACCAATAATTATCAAAACTCAACCAACAAAAACGTGAATGGTT
CAAATATTCCTAAAGCTTGGAGAAGACCCAAAAGAATGGAGCATTGTTGA
ACTTCAAGGAACTTTGGAGAGCAGTGAAGAAGAATTATGTGGAAGTCATA
TCGGAAATTTACACTTTGATGATAAAGGTACGCCTCAGCTAATTTGTGGT
CACCACCTGGTGACAGGCAAGATTCAAAAACTCGATAAACCATATGCAGT
AATGAAGAAAAACAGTATTTCACATGGAATGAGCGAGTCAATGGAAATCG
ATGATTCAGATGGTCAATCAACAGCCTACGATATTGTTGCTTTcgtcaaa
caaaaaataatcttcAAAAATCGACCCAAACCAATAATTATCAAAACTCA
ACCAACAAAAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041980XLOC_041980Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067200-proteinTCONS_00067200-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067200-exon-scaffold_466-1491911889:313779..313962TCONS_00067200-exon-scaffold_466-1491911889:313779..313962Clytia hemisphaericaexon
TCONS_00067200-exon-scaffold_466-1510915933:313779..313962TCONS_00067200-exon-scaffold_466-1510915933:313779..313962Clytia hemisphaericaexon
TCONS_00067200-exon-scaffold_466-1575043694:313779..313962TCONS_00067200-exon-scaffold_466-1575043694:313779..313962Clytia hemisphaericaexon
TCONS_00067200-exon-scaffold_466-1491911889:319241..319349TCONS_00067200-exon-scaffold_466-1491911889:319241..319349Clytia hemisphaericaexon
TCONS_00067200-exon-scaffold_466-1510915933:319241..319349TCONS_00067200-exon-scaffold_466-1510915933:319241..319349Clytia hemisphaericaexon
TCONS_00067200-exon-scaffold_466-1575043694:319241..319349TCONS_00067200-exon-scaffold_466-1575043694:319241..319349Clytia hemisphaericaexon
TCONS_00067200-exon-scaffold_466-1491911889:320042..321051TCONS_00067200-exon-scaffold_466-1491911889:320042..321051Clytia hemisphaericaexon
TCONS_00067200-exon-scaffold_466-1510915933:320042..321051TCONS_00067200-exon-scaffold_466-1510915933:320042..321051Clytia hemisphaericaexon
TCONS_00067200-exon-scaffold_466-1575043694:320042..321051TCONS_00067200-exon-scaffold_466-1575043694:320042..321051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:313779..321051 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.2771	51.3897	29.6482	30.291	6.58566	6.85777	6.4359	6.42189	8.72248	6.92823	7.9575	8.06818	4.87487	8.12893	8.65576	8.98208	8.6419	10.1857	7.48067	6.06019	9.73852	9.00093	28.1418	24.8379	7.82465	8.90054	6.88272	5.16039	10.9734	10.744
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018607Ctf8
Vocabulary: Cellular Component
TermDefinition
GO:0031390Ctf18 RFC-like complex
Vocabulary: Biological Process
TermDefinition
GO:0007064mitotic sister chromatid cohesion
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007064 mitotic sister chromatid cohesion
cellular_component GO:0031390 Ctf18 RFC-like complex
Blast
[Close]
BLAST of TCONS_00067200 vs. Swiss-Prot (Human)
Match: CTF8 (Chromosome transmission fidelity protein 8 homolog OS=Homo sapiens GN=CHTF8 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.687e-16
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 3 
Query:  201 EWSIVELQGTLESSEEE-LCGSHIGNLHFDDKGTPQLICGHHLVTGKIQKLDKPYAVMKKNSISHGMSESMEIDDSDGQSTAYDIVAFVKQKIIFKNR 491
            EW ++ELQG +E+     L G+ +G+LH+  +G P LI GHH++ GKI  L+KP+AV+ K+  + G  +  E+    G  T Y + A +K KI+FK R
Sbjct:   16 EWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILYGKIIHLEKPFAVLVKH--TPGDQDCDELGRETG--TRYLVTALIKDKILFKTR 109
The following BLAST results are available for this feature:
BLAST of TCONS_00067200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTF89.687e-1640.82Chromosome transmission fidelity protein 8 homolog... [more]
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