TCONS_00067191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067191
Unique NameTCONS_00067191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067191 ID=TCONS_00067191|Name=TCONS_00067191|organism=Clytia hemisphaerica|type=transcript|length=1643bp
TTTGCTGCCAACGCTAGAAGTTGATGGTAGaaatatagaATATTAAAATC
AACATGATGAAATTATTTGTTCTGGCCAGCATTGCAACAGCTGCTCTGTG
TATGACCATTGAAAAAGCTGAATTAATTGCAGATGAAGGATGGCAATTAT
GGAAATCTACACATAATGCAGCTTATGCGGACTTTAATGAAGAAAAAGTT
AGATATACAATTTGGCAAGACAATGTTAGACGTATTACCCAATTCAATCG
TAACAACAAAAAGATGTCTTTAGGTATGAATCATTTTGGGGATATGACAA
CTACTGAATTCAAATCGAAAATGAATGGTTACTTGGCTGGAAGCAAACAA
CAAGGATCTACTTTCATGACTCCAAACTTTGCTGAGATTCCAGATTCTGT
TGATTGGAGAAAAAAGGATGGATATGTTTCTGAAGTCAAAAATCAAGGAC
AATGTGGATCATGCTGGGCTTTCTCTACTACTGGAGCTTTGGAAGGACAA
CATTTCAGAAAGACCGGTCAAAAGGTTGATTTGAGTGAACAAAACTTGGT
TGATTGCTCTAAAGATTATGGAAACTATGGATGTCAAGGTGGATTAATGG
ACAATGCTTTCAAATACATCAAAGCCAATGGGGGGATTGATACTGAGAAA
AGTTACCCATACGAAGGAAAAaatcttCAATGCAGATTCAAGAAATCCAG
CGTCGGAGCTGACGATACCGGATTTGTTGATATCCCAAAAGGCAATGAAG
ATGCTTTGAAGAATGCCTCAGCCACTGTCGGTCCAATCTCGGTTGCTATT
GATGCTTCACACTTCTCATTCCAATTTTACAAAGAAGGTGTTTATGATGA
ACCACAATGCAGTAGCACCCAACTGGATCACGGCGTCTTGGTTGTCGGTT
ATGGATCCATGAATGGACAAGACTACTGGATCGTCAAAAACAGctGGGGA
CCAGGATGGGGCTTGAAAGGATACATCATGATGAGCCGTAACAAGAACGA
CCAATGCGGTATCGCTTCATCCGCATCTTACCCACTCGTCTAAGATGTTT
TTATACagcttttcgaccgtagccaccaattgccgcgcgggcattttttt
gtccgctttatcccactaaaaccgtcccagtcccagtcttttttaataga
caaaagaaaaatgtgtGAAAAAAGGAGTGGCACGGGCCTGACTGTGCGAC
cacggtcgaaaagatgtattAGTGATGTTGTATATTTCCAGGTGCCCTAA
ATGTTAATCTTTTCTAGGAACTGAAAACTTTTCTTTCTGTTGACCATCTT
TGATAGAGTTTTGGTTTCTGATAACTTCGTTTCGTAAAAACTTGACACCt
gggaaaattctttttgttttatatAGATGTTAACAAATAATTTCTTGTCA
ACGAGCATTTGTACTATTGATGCAATAAGCCTTATTTTGCTTagtattta
aaatttgaaaacgagtttttaaaaaaataggttaaaatagtaaaaaatcc
aacataaaaaagtatttaaaattttgacgttgtatttttgtttttattta
tcgCCGTTATGACGAAAgcttctttgtatttttttttctaatttttgatg
gaataaaaaaccctgaaaaatagtgataatatttcacaaaata
Run BLAST on NCBI

protein sequence of TCONS_00067191-protein

>TCONS_00067191-protein ID=TCONS_00067191-protein|Name=TCONS_00067191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MMKLFVLASIATAALCMTIEKAELIADEGWQLWKSTHNAAYADFNEEKVR
YTIWQDNVRRITQFNRNNKKMSLGMNHFGDMTTTEFKSKMNGYLAGSKQQ
GSTFMTPNFAEIPDSVDWRKKDGYVSEVKNQGQCGSCWAFSTTGALEGQH
FRKTGQKVDLSEQNLVDCSKDYGNYGCQGGLMDNAFKYIKANGGIDTEKS
YPYEGKNLQCRFKKSSVGADDTGFVDIPKGNEDALKNASATVGPISVAID
ASHFSFQFYKEGVYDEPQCSSTQLDHGVLVVGYGSMNGQDYWIVKNSWGP
GWGLKGYIMMSRNKNDQCGIASSASYPLV
Run BLAST on NCBI

transcript from alignment at scaffold_466:255748..264637+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067191 ID=TCONS_00067191|Name=TCONS_00067191|organism=Clytia hemisphaerica|type=transcript|length=8890bp|location=Sequence derived from alignment at scaffold_466:255748..264637+ (Clytia hemisphaerica)
TTTGCTGCCAACGCTAGAAGTTGATGGTAGGTAGGCTGACTTACTTTTTA
CCTTATCTCTAGTCTACTCTTTAACACTCTTTTTGTTACTTCTCAgctca
aatttcaattttgtttttgtattgtttgtttttactttattctAGAAGAG
ATCTAACTTCTTTCTTGTCTGTCTTTTTACGTCAGTAACTTTCACTTTTA
CTGTTGTTAATTTGTCATAAAGTTCTAGTGGTGTCATGTTTAAGTATTat
tttacactagaataacctTAAAACAGTAGGGtggtcaggccaaaattttc
ccctcaaattttgaaaaccaaactaattttatttgaaagtccttaccttt
gtgagaaaaatgaggggtcatttgttaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtattt
aaaaaaaaagaatgaacaagtttggagttgttaaggataagttatgatgg
atggaatgttctaattttgattttcgactttttccacgCAAAAACGCCCT
GCCCAGCGCCAGTTGGCAACCGGTCTAGTTAtggcgaccgaacgtctttg
aatccagaaaagtcatacaaaaacaaacctctggagaatttcttttggta
gttatctgccttgacctattccccgtactgtgtaaaaaaaattctagaaa
aaaacaagtagaatccgaaagatccaactttgcacggaagcattcgaaaa
agccggattttttgaaaaaaataaaaaatggctacctgtggacaaaaaag
cttcgtaAGTAAAAACGTTTCAACTAacactccaaaaaatacttttccaA
AACGATGAGTATGTTAGAAAGTATTTCTATATTTAAAAATCAGCTCGATA
GGGTTTCCTTcgtctgaaatattgataaaaaagttgatgcatGCAATCAT
TTTCGAAATAagacgtccagtctgcgaccgaaaaaatcgaaagtgagaaa
aagaagactctacattgcaatcaaaacattccagatgctgagaaaaaaaa
gaagactttacattgcgatcaaaacattcaagggGCATGCCCGCAGTCCT
TAACTTGACAACTCCAGCAATGCGAAGTTTCTAGCTCCGGAttgaaataa
caaaggaaaCCGGTATATTGAATCTCGGGGtagacataaaaaattcccAG
GTTTTTATCAAAGAAGACTCTCTATAGActgccactttcaaaacaaaaca
aaaacaaactttactttagaaaaaaatggcgacttgaagaaaaattctaa
aaaaacatgccaaagtgagctattttaaaacaaaagaacgagtgcaaaga
aattaaatatgagtttttttatcatcctgatcaattcATATGACCTAACC
TGCAAGTAgactgattttctctttttagcgatcggtcgcagactgatttt
ctctttttagcgatcggtcgcagactggtacatcggtcgggaactgggca
ctagtaccgctcgcttcgaaagttttttattctaagaagattgcctcaaa
taaaaaatcaattaacaaacacgaagagcatgttaaaagttgtctaaccC
TTGGTCGAAAAGgattaaaaagttaagaagtttgtgagaaatttgaataa
aaaaatttcgatcgccaactgggcagggtactctacAGAGGGTGGTTCAG
GCCATTCGAGAATTTGTCTGTGTAACAGGGggggacgacacaggatttct
gaGGGCAAAAGtcttcaccaaaattcgaaatttccaaggcaagagaagaa
aatgtatgaatttctaAAGCAATTGATTGAATTAAAAacggcaaaaaaga
gtggaatttctgaCACATTTTGCAAGAGTACATGAATTTTCATCATGAAT
TTTctgaccaccactggaaaaaagaattatttccgaggctagaaaaaatt
ttcaaatgtacGTCCTCAGACGGGGATAACGAGCATTTTTTGGAATGGCC
CTTTAGattttttaacccttttcaGTCCCAGAGGTTTTACAGCCTGTTAC
agctaccgtgagattgggtaacttgcatcagtggaggctaacatgcatag
ccctcaaatgaaagacctggctNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNatacaactatgcagctccgctcgcagctctactctacca
tttttgttttgatttaattttgtattttaatgaccagccaggtctttcat
ttgagggctgtacatgttagcctccactgatgcaagttacccaatctcac
ggtacatcaaaggaaaaaatttgaaagaagaaaatttggaagatttggtc
aaaatctgtcaaattaagttcccgccaaattaaattttttctgtcgtctg
ccaaattaaattaccGATAAATTTAAGTTGCTCTATTTAtcccccaaatg
tgtgctatttcaggctttaaaacaggtttttccttttttaattgcgtttt
ttggacaaaaatgtccttcgtccgccaaattaaattcctgctaaatttaa
tttttcaagttaacggTCAAATTTTATTCCCtctgaaaaaccttttttgg
cCATCGGCAAGGAAGAAgctgtaaaaaatcatttttgagccTACAGTCTT
TGTTGCTATTTTATGTAATTTTAAGGGAGGGTAACAAGTAGGCAAAATGG
GTACCAGGTATGTGCAAGCCAAGGGTCCCTTTTTTTACACCCTTTggaag
tctctcaaaggggtacaaaaattattaaaaagcaaTGAGTTtctgtaagg
gttccaaaataataaaaatcaatAATTGACTCCTTCAAAGAAAGGGATAT
TTAAATTCTTGAAATATGgacgaaaatgaaaatgaaattttttgaacaTA
TTCTCTCAGCTAAGGGtggcaaaaacatcaaaaatgggcaaaattttaaa
aatttcttgcAAGCCTAGTATATACAGGCTCAGGCTCTTAGTGGAAAGTT
TTCCTCCTTGTTGTTGCCTCACAACACTTTTGCTGAGATGAGCAAGCCAG
CAATcctcaaaatggcaaatttcaaatgaaaagcCTAGAAAATAGCACAA
AATGGGTGCTTTAAATAAAGAGCCTCAACAACTACTTAAAAGCcaccaaa
aatttaatttttcttctctcaACTCTAGTTAGCACCTTGGAgcctttgtt
tattttttcaattgttttcaaatttcttgGGGGGACActcaatcaaagaa
aaaagatcCTTACAGTACTGtgcatttttaaaaagattatttaCCATTTT
GAGGCATAATATGGTCAGATTTCCCAAACTTTACATCCTTAGATGCACTT
TTGCTCATATTTCGACCCTTACTGTGCAATTTGGGAAGCTTGGGAAAAGG
ACATTGTCCAACCCAAATAGCTTCTTGTTCAACCCAAAAAGCGTGacttt
caagctaaagcaaccttGAACCAACATTTTGTCCTACCCAGTCCTACCtg
taaaatctttattttgaccCTTGTGGTAGGTCGTTTATCTGTAAGGAATA
TCAAAATTAGGTCACAGACAAGTTGTCAGGAACTGAACTTTAAAATTGAC
TGGATATGCCATATATATATCCAGCCTCATTTTCAGAGTTCGCTGTTTTT
TGATGGATTAGTGCAATTGTTTTGGCAGGGATTCTGATGCAATGTATTGC
AATGCATTACACACTCACCCTTTCATATGTTTAAGCTGGCTAAGAATGAA
TTATTGCTAAAAAGTATATATATTCTCTTTTGTATCAAGGGAACCAAGGG
AATATGCTTCTGCTGACCTAAATTTCATTGGTTTTATtgctattttttag
aaatatagaATATTAAAATCAACATGATGAAATTATTTGTTCTGGCCAGC
ATTGCAACAGCTGCTCTGTGTATGACCATTGAAAAAGCTGAATTAATTGC
AGATGAAGGATGGCAATTATGGAAATCTACACATAATGCAGCTTATGCGG
ACTTTAATGAAGAAAAAGTTAGATATACAATTTGGCAAGACAATGTTAGA
CGTATTACCCAATTCAATCGTAACAACAAAAAGATGTCTTTAGGTATGAA
TCATTTTGGGGATATGACAACTACTGAATTCAAATCGAAAATGAATGGTT
ACTTGGCTGGAAGCAAACAACAAGGATCTACTTTCATGACTCCAAACTTT
GCTGAGATTCCAGATTCTGTTGATTGGAGAAAAAAGGATGGATATGTTTC
TGAAGTCAAAAATCAAGGACAATGTGGATCATGCTGGGCTTTCTCTACTG
TAAGTTTTCGAATTCATCACTTGGCTGAACTGTGTTTGTTATTGGGAAAG
CTAAGCTCCATTTAATTTAACTAATTTGGTTACAGTGGGAGAGTCGTGTT
ACCCTCATGTTTGCAACAATAAAATTATGTTGTTTTTTAACAAACAGCTA
GGATTATATTTTGGGAGTTGCActagtttttccaaaaatttgtaaaattt
aatgcttgacaaaattttcatacccaagatttttgccaaaaactcTTGTC
TTCTGTAAAAACCCTAGGAAGTGGAAAGAAATTAGTTTCGGATGTCCAAA
AATAAGCCCCACAAAAGTTTTTATCCACTTCAGGTAAAGGGTTGTGTgta
cagtataattgtttttcatCACAAAATTAATGTTTGTTGTGTCTGTTTTT
ATAGACTGGAGCTTTGGAAGGACAACATTTCAGAAAGACCGGTCAAAAGG
TTGATTTGAGTGAACAAAACTTGGTTGATTGCTCTAAAGATTATGGAAAC
TATGGATGTCAAGGTGGATTAATGGACAATGCTTTCAAATACATCAAAGC
CAATGGGGGGATTGATACTGAGAAAAGTTACCCATACGAAGGAAAAGTAA
GAGCTATTTCTGGTTGCTGCAATATACATACATATAATTCAGTTATCTTT
AATTAATGTAATATAAATGATTCATGGCTTCTTGAATTGATAAGAAGGCT
TTTAAAGTACGAAAATCTCTGAAATTATCTTATTTGTTTAACCCGTTTTT
CTCGTTTCCTTATTATTTAGAGACAGTAATTTTGAAGTCTTTTGAGGAGA
TTTCTATAATTGACTAGTTTCTGCTTGTTTCAAATATCTTGTGTTTGATA
ACTGTAGATCCTTACCCATCTggctttttaaataaaattattctcaattt
tttttacagaatcttCAATGCAGATTCAAGAAATCCAGCGTCGGAGCTGA
CGATACCGGATTTGTTGATATCCCAAAAGGCAATGAAGATGCTTTGAAGA
ATGCCTCAGCCACTGTCGGTCCAATCTCGGTTGCTATTGATGCTTCACAC
TTCTCATTCCAATTTTACAAAGAAGGTGTTTATGATGAACCACAATGCAG
TAGCACCCAACTGGATCACGGCGTCTTGGTTGTCGGTTATGGATCCATGA
ATGGACAAGACTACTGGATCGTCAAAAACAGGTAAGAGTTGAACAAATTG
ATCCAATAAAACATTCTATCGTAACatcttgaagaaaaaaatcgatttaA
ACAGCACACTAAATTGAAACTGCTATTGAAAACAATCAtcgaatatttta
aaatataatttaatgatttttgttttctttctttttttagctGGGGACCA
GGATGGGGCTTGAAAGGATACATCATGATGAGCCGTAACAAGAACGACCA
ATGCGGTATCGCTTCATCCGCATCTTACCCACTCGTCTAAGATGTTTTTA
TACagcttttcgaccgtagccaccaattgccgcgcgggcatttttttgtc
cgctttatcccactaaaaccgtcccagtcccagtcttttttaatagacaa
aagaaaaatgtgtGAAAAAAGGAGTGGCACGGGCCTGACTGTGCGACcac
ggtcgaaaagatgtattAGTGATGTTGTATATTTCCAGGTGCCCTAAATG
TTAATCTTTTCTAGGAACTGAAAACTTTTCTTTCTGTTGACCATCTTTGA
TAGAGTTTTGGTTTCTGATAACTTCGTTTCGTAAAAACTTGACACCtggg
aaaattctttttgttttatatAGATGTTAACAAATAATTTCTTGTCAACG
AGCATTTGTACTATTGATGCAATAAGCCTTATTTTGCTTagtatttaaaa
tttgaaaacgagtttttaaaaaaataggttaaaatagtaaaaaatccaac
ataaaaaagtatttaaaattttgacgttgtatttttgtttttatttatcg
CCGTTATGACGAAAgcttctttgtatttttttttctaatttttgatggaa
taaaaaaccctgaaaaatagtgataatatttcacaaaata

Coding sequence (CDS) from alignment at scaffold_466:255748..264637+

>TCONS_00067191 ID=TCONS_00067191|Name=TCONS_00067191|organism=Clytia hemisphaerica|type=CDS|length=3960bp|location=Sequence derived from alignment at scaffold_466:255748..264637+ (Clytia hemisphaerica)
ATGATGAAATTATTTGTTCTGGCCAGCATTGCAACAGCTGCTCTGTGTAT
GACCATTGAAAAAGCTGAATTAATTGCAGATGAAGGATGGCAATTATGGA
AATCTACACATAATGCAGCTTATGCGGACTTTAATGAAGAAAAAGTTAGA
TATACAATTTGGCAAGACAATGTTAGACGTATTACCCAATTCAATCGTAA
CAACAAAAAGATGTCTTTAGGTATGAATCATTTTGGGGATATGACAACTA
CTGAATTCAAATCGAAAATGAATGGTTACTTGGCTGGAAGCAAACAACAA
GGATCTACTTTCATGACTCCAAACTTTGCTGAGATTCCAGATTCTGTTGA
TTGGAGAAAAAAGGATGGATATGTTTCTGAAGTCAAAAATCAAGGACAAT
GTGGATCATGCTGGGCTTTCTCTACTACTGGAGCTTTGGAAGGACAACAT
TTCAGAAAGACCGGTCAAAAGGTTGATTTGAGTGAACAAAACTTGGTTGA
TTGCTCTAAAGATTATGGAAACTATGGATGTCAAGGTGGATTAATGGACA
ATGCTTTCAAATACATCAAAGCCAATGGGGGGATTGATACTGAGAAAAGT
TACCCATACGAAGGAAAAaatcttCAATGCAGATTCAAGAAATCCAGCGT
CGGAGCTGACGATACCGGATTTGTTGATATCCCAAAAGGCAATGAAGATG
CTTTGAAGAATGCCTCAGCCACTGTCGGTCCAATCTCGGTTGCTATTGAT
GCTTCACACTTCTCATTCCAATTTTACAAAGAAGGTGTTTATGATGAACC
ACAATGCAGTAGCACCCAACTGGATCACGGCGTCTTGGTTGTCGGTTATG
GATCCATGAATGGACAAGACTACTGGATCGTCAAAAACAGctGGGGACCA
GGATGGGGCTTGAAAGGATACATCATGATGAGCCGTAACAAGAACGACCA
ATGCGGTATCGCTTCATCCGCATCTTACCCACTCGTCTAAATGATGAAAT
TATTTGTTCTGGCCAGCATTGCAACAGCTGCTCTGTGTATGACCATTGAA
AAAGCTGAATTAATTGCAGATGAAGGATGGCAATTATGGAAATCTACACA
TAATGCAGCTTATGCGGACTTTAATGAAGAAAAAGTTAGATATACAATTT
GGCAAGACAATGTTAGACGTATTACCCAATTCAATCGTAACAACAAAAAG
ATGTCTTTAGGTATGAATCATTTTGGGGATATGACAACTACTGAATTCAA
ATCGAAAATGAATGGTTACTTGGCTGGAAGCAAACAACAAGGATCTACTT
TCATGACTCCAAACTTTGCTGAGATTCCAGATTCTGTTGATTGGAGAAAA
AAGGATGGATATGTTTCTGAAGTCAAAAATCAAGGACAATGTGGATCATG
CTGGGCTTTCTCTACTACTGGAGCTTTGGAAGGACAACATTTCAGAAAGA
CCGGTCAAAAGGTTGATTTGAGTGAACAAAACTTGGTTGATTGCTCTAAA
GATTATGGAAACTATGGATGTCAAGGTGGATTAATGGACAATGCTTTCAA
ATACATCAAAGCCAATGGGGGGATTGATACTGAGAAAAGTTACCCATACG
AAGGAAAAaatcttCAATGCAGATTCAAGAAATCCAGCGTCGGAGCTGAC
GATACCGGATTTGTTGATATCCCAAAAGGCAATGAAGATGCTTTGAAGAA
TGCCTCAGCCACTGTCGGTCCAATCTCGGTTGCTATTGATGCTTCACACT
TCTCATTCCAATTTTACAAAGAAGGTGTTTATGATGAACCACAATGCAGT
AGCACCCAACTGGATCACGGCGTCTTGGTTGTCGGTTATGGATCCATGAA
TGGACAAGACTACTGGATCGTCAAAAACAGctGGGGACCAGGATGGGGCT
TGAAAGGATACATCATGATGAGCCGTAACAAGAACGACCAATGCGGTATC
GCTTCATCCGCATCTTACCCACTCGTCTAAATGATGAAATTATTTGTTCT
GGCCAGCATTGCAACAGCTGCTCTGTGTATGACCATTGAAAAAGCTGAAT
TAATTGCAGATGAAGGATGGCAATTATGGAAATCTACACATAATGCAGCT
TATGCGGACTTTAATGAAGAAAAAGTTAGATATACAATTTGGCAAGACAA
TGTTAGACGTATTACCCAATTCAATCGTAACAACAAAAAGATGTCTTTAG
GTATGAATCATTTTGGGGATATGACAACTACTGAATTCAAATCGAAAATG
AATGGTTACTTGGCTGGAAGCAAACAACAAGGATCTACTTTCATGACTCC
AAACTTTGCTGAGATTCCAGATTCTGTTGATTGGAGAAAAAAGGATGGAT
ATGTTTCTGAAGTCAAAAATCAAGGACAATGTGGATCATGCTGGGCTTTC
TCTACTACTGGAGCTTTGGAAGGACAACATTTCAGAAAGACCGGTCAAAA
GGTTGATTTGAGTGAACAAAACTTGGTTGATTGCTCTAAAGATTATGGAA
ACTATGGATGTCAAGGTGGATTAATGGACAATGCTTTCAAATACATCAAA
GCCAATGGGGGGATTGATACTGAGAAAAGTTACCCATACGAAGGAAAAaa
tcttCAATGCAGATTCAAGAAATCCAGCGTCGGAGCTGACGATACCGGAT
TTGTTGATATCCCAAAAGGCAATGAAGATGCTTTGAAGAATGCCTCAGCC
ACTGTCGGTCCAATCTCGGTTGCTATTGATGCTTCACACTTCTCATTCCA
ATTTTACAAAGAAGGTGTTTATGATGAACCACAATGCAGTAGCACCCAAC
TGGATCACGGCGTCTTGGTTGTCGGTTATGGATCCATGAATGGACAAGAC
TACTGGATCGTCAAAAACAGctGGGGACCAGGATGGGGCTTGAAAGGATA
CATCATGATGAGCCGTAACAAGAACGACCAATGCGGTATCGCTTCATCCG
CATCTTACCCACTCGTCTAAATGATGAAATTATTTGTTCTGGCCAGCATT
GCAACAGCTGCTCTGTGTATGACCATTGAAAAAGCTGAATTAATTGCAGA
TGAAGGATGGCAATTATGGAAATCTACACATAATGCAGCTTATGCGGACT
TTAATGAAGAAAAAGTTAGATATACAATTTGGCAAGACAATGTTAGACGT
ATTACCCAATTCAATCGTAACAACAAAAAGATGTCTTTAGGTATGAATCA
TTTTGGGGATATGACAACTACTGAATTCAAATCGAAAATGAATGGTTACT
TGGCTGGAAGCAAACAACAAGGATCTACTTTCATGACTCCAAACTTTGCT
GAGATTCCAGATTCTGTTGATTGGAGAAAAAAGGATGGATATGTTTCTGA
AGTCAAAAATCAAGGACAATGTGGATCATGCTGGGCTTTCTCTACTACTG
GAGCTTTGGAAGGACAACATTTCAGAAAGACCGGTCAAAAGGTTGATTTG
AGTGAACAAAACTTGGTTGATTGCTCTAAAGATTATGGAAACTATGGATG
TCAAGGTGGATTAATGGACAATGCTTTCAAATACATCAAAGCCAATGGGG
GGATTGATACTGAGAAAAGTTACCCATACGAAGGAAAAaatcttCAATGC
AGATTCAAGAAATCCAGCGTCGGAGCTGACGATACCGGATTTGTTGATAT
CCCAAAAGGCAATGAAGATGCTTTGAAGAATGCCTCAGCCACTGTCGGTC
CAATCTCGGTTGCTATTGATGCTTCACACTTCTCATTCCAATTTTACAAA
GAAGGTGTTTATGATGAACCACAATGCAGTAGCACCCAACTGGATCACGG
CGTCTTGGTTGTCGGTTATGGATCCATGAATGGACAAGACTACTGGATCG
TCAAAAACAGctGGGGACCAGGATGGGGCTTGAAAGGATACATCATGATG
AGCCGTAACAAGAACGACCAATGCGGTATCGCTTCATCCGCATCTTACCC
ACTCGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041976XLOC_041976Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067191-exon-scaffold_466-1491911889:255748..255777TCONS_00067191-exon-scaffold_466-1491911889:255748..255777Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1510915933:255748..255777TCONS_00067191-exon-scaffold_466-1510915933:255748..255777Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1575043694:255748..255777TCONS_00067191-exon-scaffold_466-1575043694:255748..255777Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1491911889:262148..262596TCONS_00067191-exon-scaffold_466-1491911889:262148..262596Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1510915933:262148..262596TCONS_00067191-exon-scaffold_466-1510915933:262148..262596Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1575043694:262148..262596TCONS_00067191-exon-scaffold_466-1575043694:262148..262596Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1491911889:263002..263193TCONS_00067191-exon-scaffold_466-1491911889:263002..263193Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1510915933:263002..263193TCONS_00067191-exon-scaffold_466-1510915933:263002..263193Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1575043694:263002..263193TCONS_00067191-exon-scaffold_466-1575043694:263002..263193Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1491911889:263507..263778TCONS_00067191-exon-scaffold_466-1491911889:263507..263778Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1510915933:263507..263778TCONS_00067191-exon-scaffold_466-1510915933:263507..263778Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1575043694:263507..263778TCONS_00067191-exon-scaffold_466-1575043694:263507..263778Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1491911889:263938..264637TCONS_00067191-exon-scaffold_466-1491911889:263938..264637Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1510915933:263938..264637TCONS_00067191-exon-scaffold_466-1510915933:263938..264637Clytia hemisphaericaexon
TCONS_00067191-exon-scaffold_466-1575043694:263938..264637TCONS_00067191-exon-scaffold_466-1575043694:263938..264637Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067191-proteinTCONS_00067191-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:255748..264637 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
220.239	231.748	306.492	269.139	57.4298	4.74564	72.8839	55.0731	333.896	260.146	340.443	214.803	237.437	184.011	148.082	135.07	189.367	216.725	381.4	901.752	224.262	233.786	266.187	349.007	214.52	130.333	1537.33	2024.44	99.0988	91.6002
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000668Peptidase_C1A_C
IPR013201Prot_inhib_I29
IPR000169Pept_cys_AS
IPR025661Pept_asp_AS
IPR025660Pept_his_AS
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
[Close]
BLAST of TCONS_00067191 vs. Swiss-Prot (Human)
Match: CATL1 (Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2)

HSP 1 Score: 357.836 bits (917), Expect = 8.349e-119
Identity = 180/333 (54.05%), Postives = 223/333 (66.97%), Query Frame = 3 
Query:   78 SIATAALCMTIEKAELIADEG----WQLWKSTHNAAYADFNEEKVRYTIWQDNVRRITQFNRNNKK----MSLGMNHFGDMTTTEFKSKMNGYLAGSKQQGSTFMTPNFAEIPDSVDWRKKDGYVSEVKNQGQCGSCWAFSTTGALEGQHFRKTGQKVDLSEQNLVDCSKDYGNYGCQGGLMDNAFKYIKANGGIDTEKSYPYEGKNLQCRFKKSSVGADDTGFVDIPKGNEDALKNASATVGPISVAIDASHFSFQFYKEGVYDEPQCSSTQLDHGVLVVGYG----SMNGQDYWIVKNSWGPGWGLKGYIMMSRNKNDQCGIASSASYPLV 1040
            ++  AA C+ I  A L  D      W  WK+ HN  Y   NEE  R  +W+ N++ I   N+  ++     ++ MN FGDMT+ EF+  MNG+     ++G  F  P F E P SVDWR+K GYV+ VKNQGQCGSCWAFS TGALEGQ FRKTG+ + LSEQNLVDCS   GN GC GGLMD AF+Y++ NGG+D+E+SYPYE     C++      A+DTGFVDIPK  E AL  A ATVGPISVAIDA H SF FYKEG+Y EP CSS  +DHGVLVVGYG      +   YW+VKNSWG  WG+ GY+ M++++ + CGIAS+ASYP V
Sbjct:    4 TLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYG-MNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREK-GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333
The following BLAST results are available for this feature:
BLAST of TCONS_00067191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL18.349e-11954.05Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2[more]
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