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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067181 ID=TCONS_00067181|Name=TCONS_00067181|organism=Clytia hemisphaerica|type=transcript|length=1988bp
CAGATTCagtgaacaaaataaaagaaattaatgaaaatgaatATAAACAC
TAAATGACTTTCCACAATGACATGGGCACATCATGGGACATTTCATCaac
atatttattttgttgatccTTTTTATAGCGATGGTTCATTGCAAAGGTGA
CCAAGAAAACAGATATATTAACAAAGACATTTTGTCACCTTTTCTATTAA
ACAAAGTTGAGACAAGACGAAAGAACCGTTTAAGTCATCAACATTATGAA
ATTGTAAATACTGATACAAGAAAGAACTCATCACAACTGGTACAACGTTT
TACAAAGAAATTAACAAATAATACAGTTTACGGTCACAGAATACTTATTT
CAAATGGGTACAAAGTGTTATCAGTTTTAGAACCTAAAGAAGATGGTGGT
TGCAGTAAACACCAAACTGCTACAGTCTATGAATCATCGAAACAAAGGGA
ATGCTTAGTTGCCATTAATGCTGGATTCTTCAATGAAGACACTGGACAAT
GTTTTGGTAACATTATCAGTGATGGTGAACTAATCAATCAGTTTAGAGGA
CTCAAAAGCGTAAACTTCGGTATCCGTGACGATGGTAGTATAGTGACTGG
GTATTTGAAAGAAACAGATTTTAAGGAAATGAGGCATCCACTGTTACAAC
TAGTTACAGGTGTGGGCTGGATTTTGAGAAGGGGAGAAAATTATTTATCC
ACTAGTAAACAACATGAACAATGTAATTTAGATAacttacaaaatttctt
tgaagtgaGAACAGCAAGGACCTTTTTAGGGCACGACTCAAAAGGCAATG
TACATATTGTGCAGGTCGAAGGCAAAACTGGTTTGTATGGGATAAGTCTA
TATGAGTCAGTGGAACTTCTGAAGTCATTTAATTTGGTGAATGTAATTAA
TTTGAATGGTGCTGGATCGTCTACACTGGTGATTAACGATACTGTTGTCA
ATTATCCTGGTAACACTTgTTACAACGATGAAGGCCGATCAAATCTATGC
GATACGAAAGTCAGTACTATCCTCTGTGTACACAAACCAGATTCCTGTAT
CCCTGGACAGTCTTGTTCAGGAAGAGGAACCTGTTTCAAAGGAAAGTGTA
AATGTCACAATGACTGGTCTGGCAAAGATTGCGAATTCAATGgaaaaatg
cTGGAGAAGTGTTGTTGGCGTAATTATAACATAGTAATCTTCATGAGTGC
GTTGATAGGAGCCAGTGTGGTAATCAACGTTGTCTTATGTGATCTTTTCA
TGTTATACCGATTCCGTTCGAAGGATATGACACAACCGAGGAGAAGACCC
AAAGACAGATTGAGGACGTACTTGAAGGAAACTTCAATCATTTCTGATGA
CGAATCTACTGATATTTTAACTTCAGCTGAAAATTTACTGGCTACCACTT
CTTCTCTCTAGATTTTCTTCATTAAAACACTTCTTATTATACTGAGTCTa
aatggtgataaaagagatttaagtttaaaaaaagaaaacttcattCGGAA
AAGGGGCTCAAGAAGGTTTTACTGTGTTTTTCTCTATATTTTACCTAGGA
AAGTGTCTGATTTTCTCATTATCTAAAGATATTTGGTGTCAGGTGAAAGG
ACTCCTTTAATAATCAGGCTAAAGTCAATTCCTTTAGCCATTTTCTTCAC
TTAATTTTGTCGTCTCTGTGATTGTATTCTGCTCTCTGTACTATTCAAAT
CAGTGATGACTGACAATGTTAATTAAccagaaatttttaattttaacaac
actatagattttattttttaatttgaacaatttaaaaacaactaccttaa
gggaagaaatttttgcgagtagaaattttcgcggaatttagtCTCGCAAA
TGAGCcaggggggtcatgcagttactaTGTGAACACTATGACACTTAGTA
CGTTGTGGTTTaacaactaaaaaaaattaaaacagttACTCCAAAGTGGA
GTAAGTGCacattttttcccttttttgaaaaatttccc Run BLAST on NCBI transcript from alignment at scaffold_466:206913..211673+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067181 ID=TCONS_00067181|Name=TCONS_00067181|organism=Clytia hemisphaerica|type=transcript|length=4761bp|location=Sequence derived from alignment at scaffold_466:206913..211673+ (Clytia hemisphaerica)
CAGATTCagtgaacaaaataaaagaaattaatgaaaatgaatATAAACAC
TAAATGACTTTCCACAATGACATGGGCACATCATGGGACATTTCATCaac
atatttattttgttgatccTTTTTATAGCGATGGTTCATTGCAAAGGTGA
CCAAGAAAACAGATATATTAACAAAGACATTTTGTCACCTTTTCTATTAA
ACAAAGTTGAGACAAGACGAAAGAACCGTTTAAGTCATCAACATTATGAA
ATTGTAAATACTGATACAAGAAAGAACTCATCACAACTGGTACAACGTTT
TACAAAGAAATTAACAAATAATACAGTTTACGGTCACAGAATACTTATTT
CAAATGGGTACAAAGTGTTATCAGTTTTAGAACCTAAAGAAGATGGTGGT
TGCAGTAAACACCAAACTGCTACAGTCTATGAATCATCGAAACAAAGGGA
ATGCTTAGTTGCCATTAATGCTGGATTCTTCAATGAAGACACTGGACAAT
GTTTTGGTAACATTATCAGTGATGGTGAACTAATCAATCAGTTTAGAGGA
CTCAAAAGCGTAAACTTCGGTATCCGTGACGATGGTAGTATAGTGACTGG
GTATTTGAAAGAAACAGATTTTAAGGAAATGAGGCATCCACTGTTACAAC
TAGTTACAGGTGTGGGCTGGATTTTGAGAAGGGGAGAAAATTATTTATCC
ACTAGTAAACAACATGAACAATGTAATTTAGATAacttacaaaatttctt
tgaagtgaGAACAGCAAGGACCTTTTTAGGGCACGACTCAAAAGGCAATG
TACATATTGTGCAGGTCGAAGGCAAAACTGGTTTGTATGGGTAAATATGA
AttacttttttgaatttattactTGTTTCTAATATAAcatttattaaaaa
tttcacAAGTCTCTAATATACATCTTTGACAAGATAATGCTAAAATTCAT
AATTCATAAAATGTAATTTGAAAATGATCCTTTCTTTTTGATATAGCACA
TATCTTTTTGAACTTTTATTTCGAATTCATATgttattactttatttttt
ccagGATAAGTCTATATGAGTCAGTGGAACTTCTGAAGTCATTTAATTTG
GTGAATGTAATTAATTTGAATGGTGCTGGATCGTCTACACTGGTGATTAA
CGATACTGTTGTCAATTATCCTGGTAACACTTggtataaaaaaagttata
aagaaTCCTCACTCTAATTAAAAATTCGAATGAAGAATATCTGTCAAATA
TATACTTTGCTATTTCAAGCAGTAATTGAACCAACTAAGGTTCGACAGag
tataagaaaaacaaatggaTTTCGTTAATATCTTTATCTAACTTTCTATT
TTATTGTATGTAAAACTTCAATGAACTTGACCACTGTCCTGCACTATCAc
gcttcaatttttcaatatagTTACAACGATGAAGGCCGATCAAATCTATG
CGATACGAAAGTCAGTACTATCCTCTGTGTACACAAACCAGATTCCTGTA
TCCCTGGACAGTCTTGTTCAGGAAGAGGAACCTGTTTCAAAGGAAAGTGT
AAATGTCACAATGACTGGTCTGGCAAAGATTGCGAATTCAATGGTAGGTT
GGAAACTAACTGAGATTAcattcaaaaatgagttttacGACTTTTTGGGG
TGTCTCAGGACAATTTTAACCGTGTCTatttttgtagatttatatttttc
gaaaaattaaagtttttgatCATAAATATGATACCAAAGGACTACTTAAA
AGGTAGTCGATTCGGGCAGTatctaaattttaattttgtcaaatttattt
tcaggaaaaatgcTGGAGAAGTGTTGTTGGTGAGTATTTAATTGTTCCGA
AAACTCTCAAAGCTAGAATAAGAATACGTTGCGCTAgtagtgaaaaaagt
ttgtttgtgTTGTCAAACTTTACTTACATTAGGCTACTCATTCTCTGCTC
TAATCTGCTCAACGATCATTTCAGCTCAAGAAAAAATTGTGAGAACTTAG
TACGTGATATTATGGTGTAAAAGGCCAGATGGGAAATTAATTTATCCCAT
TAGCTGGGGGAGGTTTTGTTTNAATACTGATACAAGAAAGAACTCATCAC
AACTGGTACAACGTTTTACAAAGAAATTAACAAATAATACAGTTTACGGT
CACAGAATACTTATTTCAAATGGGTACAAAGTGTTATCAGTTTTAGAACC
TAAAGAAGATGGTGGTTGCAGTAAACACCAAACTGCTACAGTCTATGAAT
CATCGAAACAAAGGGAATGCTTAGTTGCCATTAATGCTGGATTCTTCAAT
GAAGACACTGGACAATGTTTTGGTAACATTATCAGTGATGGTGAACTAAT
CAATCAGTTTAGAGGACTCAAAAGCGTAAACTTCGGTATCCGTGACGATG
GTAGTATAGTGACTGGGTATTTGAAAGAAACAGATTTTAAGGAAATGAGG
CATCCACTGTTACAACTAGTTACAGGTGTGGGCTGGATTTTGAGAAGGGG
AGAAAATTATTTATCCACTAGTAAACAACATGAACAATGTAATTTAGATA
acttacaaaatttctttgaagtgaGAACAGCAAGGACCTTTTTAGGGCAC
GACTCAAAAGGCAATGTACATATTGTGCAGGTCGAAGGCAAAACTGGTTT
GTATGGGTAAATATGAAttacttttttgaatttattactTGTTTCTAATA
TAAcatttattaaaaatttcacAAGTCTCTAATATACATCTTTGACAAGA
TAATGCTAAAATTCATAATTCATAAAATGTAATTTGAAAATGATCCTTTC
TTTTTGATATAGCACATATCTTTTTGAACTTTTATTTCGAATTCATATgt
tattactttattttttccagGATAAGTCTATATGAGTCAGTGGAACTTCT
GAAGTCATTTAATTTGGTGAATGTAATTAATTTGAATGGTGCTGGATCGT
CTACACTGGTGATTAACGATACTGTTGTCAATTATCCTGGTAACACTTgg
tataaaaaaagttataaagaaTCCTCACTCTAATTAAAAATTCGAATGAA
GAATATCTGTCAAATATATACTTTCCTATTTCAAGCAGTAATTGAACCAA
CTAAGGTTCGACAGagtataagaaaaacaaatggaTTTCGTTAATATCTC
TATCTAACTTTCTATTTTATTGTATGTAAAACTTCAATGAACTTGACCAC
TGTCCTGCACTATCAcgcttcaatttttcaatatagTTACAACGATGAAG
GCCGATCAAATCTATGCGATACGAAAGTCAGTACTATCCTCTGTGTACAC
AAACCAGATTCCTGTATCCCTGGACAGTCTTGTTCAGGAAGAGGAACCTG
TTTCAAAGGAAAGTGTAAATGTCACAATGACTGGTCTGGCAAAGATTGCG
AATTCAATGGTAGGTTGGAAACTAACTGAGATTAcattcaaaaatgagtt
ttacGACTTTTTGGGGTGTCTCAGTACAATTTTAACCGTGTCTatttttg
tagatttatatttttcgaaaaattaaagtttttgatCATAAATATGATAC
CAAAGGACTACTTAAAAGGTAGTCGATTCGGGCAGTatctaaattttaat
tttgtcaaatttattttcaggaaaaatgcTGGAGAAGTGTTGTTGGTGAG
TATTTAATTGTTCCGAAAACTCTCAAAGCTAGAATAAGAATACGTTGCGC
TAgtagtgaaaaaagtttgtttgtgTTGTCAAACTTTACTTACATTAGGC
TACTCATTCTCTGCTCTAATCTGCTCAACGATCATTTCAGCTCAAGAAAA
AATTGTGAGAACTTAGTACGTGATATTATGGTGTAAAAGGCCAGATGGGA
AATTAATTTATCCCATTAGCTGGGGGAGGTTTtgtttgaatattgaatat
cctcattttgatgcttgaaaaATGTTCTCTTTCTTTTTAGGCGTAATTAT
AACATAGTAATCTTCATGAGTGCGTTGATAGGAGCCAGTGTGGTAATCAA
CGTTGTCTTATGTGATCTTTTCATGTTATACCGATTCCGTTCGAAGGATA
TGACACAACCGAGGAGAAGACCCAAAGACAGATTGAGGACGTACTTGAAG
GAAACTTCAATCATTTCTGATGACGAATCTACTGATATTTTAACTTCAGC
TGAAAATTTACTGGCTACCACTTCTTCTCTCTAGATTTTCTTCATTAAAA
CACTTCTTATTATACTGAGTCTaaatggtgataaaagagatttaagttta
aaaaaagaaaacttcattCGGAAAAGGGGCTCAAGAAGGTTTTACTGTGT
TTTTCTCTATATTTTACCTAGGAAAGTGTCTGATTTTCTCATTATCTAAA
GATATTTGGTGTCAGGTGAAAGGACTCCTTTAATAATCAGGCTAAAGTCA
ATTCCTTTAGCCATTTTCTTCACTTAATTTTGTCGTCTCTGTGATTGTAT
TCTGCTCTCTGTACTATTCAAATCAGTGATGACTGACAATGTTAATTAAc
cagaaatttttaattttaacaacactatagattttattttttaatttgaa
caatttaaaaacaactaccttaagggaagaaatttttgcgagtagaaatt
ttcgcggaatttagtCTCGCAAATGAGCcaggggggtcatgcagttacta
TGTGAACACTATGACACTTAGTACGTTGTGGTTTaacaactaaaaaaaat
taaaacagttACTCCAAAGTGGAGTAAGTGCacattttttcccttttttg
aaaaatttccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067181-exon-scaffold_466-1491911889:206913..207752 | TCONS_00067181-exon-scaffold_466-1491911889:206913..207752 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1510915933:206913..207752 | TCONS_00067181-exon-scaffold_466-1510915933:206913..207752 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1575043694:206913..207752 | TCONS_00067181-exon-scaffold_466-1575043694:206913..207752 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1491911889:207967..208095 | TCONS_00067181-exon-scaffold_466-1491911889:207967..208095 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1510915933:207967..208095 | TCONS_00067181-exon-scaffold_466-1510915933:207967..208095 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1575043694:207967..208095 | TCONS_00067181-exon-scaffold_466-1575043694:207967..208095 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1491911889:208333..208505 | TCONS_00067181-exon-scaffold_466-1491911889:208333..208505 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1510915933:208333..208505 | TCONS_00067181-exon-scaffold_466-1510915933:208333..208505 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1575043694:208333..208505 | TCONS_00067181-exon-scaffold_466-1575043694:208333..208505 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1491911889:208717..208741 | TCONS_00067181-exon-scaffold_466-1491911889:208717..208741 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1510915933:208717..208741 | TCONS_00067181-exon-scaffold_466-1510915933:208717..208741 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1575043694:208717..208741 | TCONS_00067181-exon-scaffold_466-1575043694:208717..208741 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1491911889:210853..211673 | TCONS_00067181-exon-scaffold_466-1491911889:210853..211673 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1510915933:210853..211673 | TCONS_00067181-exon-scaffold_466-1510915933:210853..211673 | Clytia hemisphaerica | exon |
| TCONS_00067181-exon-scaffold_466-1575043694:210853..211673 | TCONS_00067181-exon-scaffold_466-1575043694:210853..211673 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:206913..211673 + |
Blast
BLAST of TCONS_00067181 vs. Swiss-Prot (Human)
Match: NAGPA (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGPA PE=1 SV=2) HSP 1 Score: 214.542 bits (545), Expect = 5.303e-61 Identity = 111/287 (38.68%), Postives = 168/287 (58.54%), Query Frame = 2
Query: 290 VQRFTKKLTNNTVYGHRILISNGYKVLSVLEPKEDGGCSKHQTATVYESSKQRECLVAINAGFFNEDTGQCFGNIISDGELINQFRGLKSVNFGIRDDGSIVTGYLKETDFKEMRHPLLQLVTGVGWILRRGENYLSTSKQHEQCN----LDNLQNFFEVRTARTFLGHDSKGNVHIVQVEGKTGLYGISLYESVELLKSFNLVNVINLNGAGSSTLVINDTVVNYPGNTCYNDEGRSNLCDTKVSTILCVHKPDSCIPGQSCSGRGTCFKGKCKCHND-WSGKDCE 1135
V+ F + V GH + SVLEP GGC+ + ATV E+++ +C VA N GFF ++G+C GN++SD ++ GL++ FGIR DG++VTGYL E + + +P +QL++GV W++R G Y++ S Q +C+ + F V +ART +GHD KG + + +G+T GI+L+E E L ++VN INL+G GS+T V+N T+ +YP + C ++ R C +VST++CVH+P C P C G GTC G C+C W G C+
Sbjct: 78 VRTFVSHFRDRAVAGHLTRAVEPLRTFSVLEPGGPGGCAARRRATVEETARAADCRVAQNGGFFRMNSGECLGNVVSDERRVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGSIYINES-QATECDETQETGSFSKFVNVISARTAIGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWR---CPRQVSTVVCVHEP-RCQP-PDCHGHGTCVDGHCQCTGHFWRGPGCD 358
The following BLAST results are available for this feature:
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