TCONS_00067168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067168
Unique NameTCONS_00067168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067168 ID=TCONS_00067168|Name=TCONS_00067168|organism=Clytia hemisphaerica|type=transcript|length=274bp
GCtacttagttcttacaaaaaattgtttcctaTAATATTCCTAAAATAAT
AAGTAAATCTTGAAAACTGCGGGCCAATCGGATACCGGTATCTGGTCACG
TGTCATAGTTTTTCCAAGACCCCGCCGAACGCGGTTTTGTAAAATTCCGC
TGGAGaaacttttcagatcatcatATGCCTTAGCAATGGTGATGGGTTAT
GAGATTAAGACAAGGGTGAACTTACTATTCAATATGATatatattcaaat
gattaggagagacactctacggcg
Run BLAST on NCBI

transcript from alignment at scaffold_464:211727..212000

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067168 ID=TCONS_00067168|Name=TCONS_00067168|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at scaffold_464:211727..212000 (Clytia hemisphaerica)
cgccgtagagtgtctctcctaatcatttgaatatatATCATATTGAATAG
TAAGTTCACCCTTGTCTTAATCTCATAACCCATCACCATTGCTAAGGCAT
atgatgatctgaaaagtttCTCCAGCGGAATTTTACAAAACCGCGTTCGG
CGGGGTCTTGGAAAAACTATGACACGTGACCAGATACCGGTATCCGATTG
GCCCGCAGTTTTCAAGATTTACTTATTATTTTAGGAATATTAtaggaaac
aattttttgtaagaactaagtaGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041965XLOC_041965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067168-exon-scaffold_464-1491911889:211727..212000TCONS_00067168-exon-scaffold_464-1491911889:211727..212000Clytia hemisphaericaexon
TCONS_00067168-exon-scaffold_464-1510915933:211727..212000TCONS_00067168-exon-scaffold_464-1510915933:211727..212000Clytia hemisphaericaexon
TCONS_00067168-exon-scaffold_464-1575043694:211727..212000TCONS_00067168-exon-scaffold_464-1575043694:211727..212000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_464supercontigscaffold_464:211727..212000 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.606745	0.593605	2.80837	3.16434	0	4.09467	2.25786	0	2.17165	0.356889	0.782315	0.403044	1.21715	0.326547	0	0.824646	1.13929	0.596094	0	0	0.614423	0	3.6891	1.02696	1.46958	0	0	0.605986
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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