TCONS_00067163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067163
Unique NameTCONS_00067163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067163 ID=TCONS_00067163|Name=TCONS_00067163|organism=Clytia hemisphaerica|type=transcript|length=555bp
AACTCTGTAATGCTAGCATATGTCTGTTGTTTCATAGTTACCTCTTGCTT
CTTCAGTTCTTCTTTGGTAGTTTCTGCGTATgtcctttgttttttatctt
taacGACATCTTCCTTATCTAAAAGTTTCTCGATTTTCTTCTCCAGCCTG
TCCAATCGAGCGTTTGTAGATTTATCTCCTTGTTGCTCTCCATTATAAAC
CTTATCAGTATTTGTTGCCTTGTCCTTACGCACTCTTTCTGTACTTGTTT
TGATTTCCAGAAGAATTGGCGTGACTGTAACACATTTGGCACATTCGAAG
CGCCGGCTTTTGTATTGGAGACACAGCTGTATCTGGTAGGCAGGTAGCTC
CGTGCATGCATAATGGACAAACCTTTCGCATCTTCTACATTGTAGCACAT
CATTGTCCTTCACAATCTCGTTCATGAAGCAGTTGTCAGGGGTGCAGAAT
CCattattttgttgaatttcgatgttttttggtatttctttagttttcgc
cattttgatgcatttcgacgagcacaaccagccagaaaaaaatttgacgt
caaat
Run BLAST on NCBI

protein sequence of TCONS_00067163-protein

>TCONS_00067163-protein ID=TCONS_00067163-protein|Name=TCONS_00067163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
FDVKFFSGWLCSSKCIKMAKTKEIPKNIEIQQNNGFCTPDNCFMNEIVKD
NDVLQCRRCERFVHYACTELPAYQIQLCLQYKSRRFECAKCVTVTPILLE
IKTSTERVRKDKATNTDKVYNGEQQGDKSTNARLDRLEKKIEKLLDKEDV
VKDKKQRTYAETTKEELKKQEVTMKQQTYASITE
Run BLAST on NCBI

transcript from alignment at scaffold_464:78370..78924

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067163 ID=TCONS_00067163|Name=TCONS_00067163|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at scaffold_464:78370..78924 (Clytia hemisphaerica)
atttgacgtcaaatttttttctggctggttgtgctcgtcgaaatgcatca
aaatggcgaaaactaaagaaataccaaaaaacatcgaaattcaacaaaat
aatGGATTCTGCACCCCTGACAACTGCTTCATGAACGAGATTGTGAAGGA
CAATGATGTGCTACAATGTAGAAGATGCGAAAGGTTTGTCCATTATGCAT
GCACGGAGCTACCTGCCTACCAGATACAGCTGTGTCTCCAATACAAAAGC
CGGCGCTTCGAATGTGCCAAATGTGTTACAGTCACGCCAATTCTTCTGGA
AATCAAAACAAGTACAGAAAGAGTGCGTAAGGACAAGGCAACAAATACTG
ATAAGGTTTATAATGGAGAGCAACAAGGAGATAAATCTACAAACGCTCGA
TTGGACAGGCTGGAGAAGAAAATCGAGAAACTTTTAGATAAGGAAGATGT
CgttaaagataaaaaacaaaggacATACGCAGAAACTACCAAAGAAGAAC
TGAAGAAGCAAGAGGTAACTATGAAACAACAGACATATGCTAGCATTACA
GAGTT

Coding sequence (CDS) from alignment at scaffold_464:78370..78924

>TCONS_00067163 ID=TCONS_00067163|Name=TCONS_00067163|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_464:78370..78924 (Clytia hemisphaerica)
tttgacgtcaaatttttttctggctggttgtgctcgtcgaaatgcatcaa
aatggcgaaaactaaagaaataccaaaaaacatcgaaattcaacaaaata
atGGATTCTGCACCCCTGACAACTGCTTCATGAACGAGATTGTGAAGGAC
AATGATGTGCTACAATGTAGAAGATGCGAAAGGTTTGTCCATTATGCATG
CACGGAGCTACCTGCCTACCAGATACAGCTGTGTCTCCAATACAAAAGCC
GGCGCTTCGAATGTGCCAAATGTGTTACAGTCACGCCAATTCTTCTGGAA
ATCAAAACAAGTACAGAAAGAGTGCGTAAGGACAAGGCAACAAATACTGA
TAAGGTTTATAATGGAGAGCAACAAGGAGATAAATCTACAAACGCTCGAT
TGGACAGGCTGGAGAAGAAAATCGAGAAACTTTTAGATAAGGAAGATGTC
gttaaagataaaaaacaaaggacATACGCAGAAACTACCAAAGAAGAACT
GAAGAAGCAAGAGGTAACTATGAAACAACAGACATATGCTAGCATTACAG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041960XLOC_041960Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067163-proteinTCONS_00067163-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067163-exon-scaffold_464-1491911889:78370..78924TCONS_00067163-exon-scaffold_464-1491911889:78370..78924Clytia hemisphaericaexon
TCONS_00067163-exon-scaffold_464-1510915933:78370..78924TCONS_00067163-exon-scaffold_464-1510915933:78370..78924Clytia hemisphaericaexon
TCONS_00067163-exon-scaffold_464-1575043694:78370..78924TCONS_00067163-exon-scaffold_464-1575043694:78370..78924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_464supercontigscaffold_464:78370..78924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.18982	1.75501	5.7453	3.95834	1.24449	2.18536	1.29808	2.67687	1.19665	1.24505	1.7488	2.19574	3.57524	3.7499	0.523023	1.8513	0.946674	1.26233	0	1.45024	2.08852	2.63463	1.0581	1.17574	2.16522	3.73358	1.77904	1.60181	0.618581	0.786504
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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