TCONS_00067158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067158
Unique NameTCONS_00067158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067158 ID=TCONS_00067158|Name=TCONS_00067158|organism=Clytia hemisphaerica|type=transcript|length=2427bp
TGGGTATTTGATAAGATTAccgaaattatgaaattgtaacactcgttttt
gttttcttcaacTATAATGTGGAGCAACGTAGACATTTTTCGCGCGCGAT
TCGCTTTTTATACCAAAATGGTAGGCAAAGTAGCGGTGTTCATGCAAGAG
CACCAGATTCTCAAAGAAAGATATAGCATGCACATGGAACATTTTAGCCT
GGCCTTGTGatttaatttgatttaattgtttttttacttattGAATTTTA
ATTGGTGATTGGATACATAGTATGTAATGTCAGAAGTTGAGGATAGACAA
ACTCTTCTCCAAAAGCTGTTAAAGAAACTTCCTTTTCCTGCTTGGGTTTT
TTTGCTCATTATTTTTGGACCCATTCTCCCTGTTGTTGTTCTCATTGTTT
ATTGTATTGATTGGTATTGCCAGTGTATGCTTATGCCTTGCAATCAAGAA
GTTATTGAAGTGgatgaaaaagataaagaagATTGATTTCATTGTGTTAT
TGTAACATCAACATAATATTAATGATGTCATCAACAATGAACTCGTGCTA
CAAGGACACCAAATTGGTTGTCATTCTGGGTAGTACGGCGGTTGGCAAAA
CAAAGTTAAGCATCGAATTGGCAAAAATGTTTGATGGGGAGATTATTAGT
GCAGATTCTATGCAGGTATACAAAGGTCTTGATATTATCACAAACAAAGT
GACACCAGAGGAGAAACAATGCATACCCCATCACATGATTGATATCTTTG
ACTCCACCCAAGAGTTCACCGTCATTGATTTCAAGCAACGAGCATTGAAA
GTCATCACAGATCTGGTAAAGAGACAGAAAGTTCCTATCATCGTTGGAGG
gacaaattatttcattgaagCATTATTATGGGATTTCTTGATCGAAGGAG
GGTTGGATGATGTGGATCCAAAGAAAGAGCTTCGAAATCGAAAAGCATTT
TTATTTCCCGGTTCAAAACGAAGACACGGTGATAAGAATGAGGTGGATGA
CGAAGAATCCGATCAAAGAGttgaTAACAGAGATGTTATAGCAGAGACAG
CGTTATATGATGAACTGATGAAGGTTGATCCAGAACGAGCCAATCAATTG
CATCCAAACAATCTACGAAAAATATCCAGAAGTTTGCAGATTTACCACAC
AACCGGGGAAACGCATTCAAGTttaatgaaaaaacaacaagatcAACCAG
GCTCAAGTGGTCCTTTAAGGTTTCCGAAAACTTTGCTACTATGGTTAACA
GCTGACCAAACAATCTTAAACGATCGAATATCAACACGAGTTGACCAAAT
GCTTGAAAAGGGACTTGAAaacgaaatcaaaacattttatgaaaaacatt
taaaagcgAATGAAGATTCGAATGTTGAGACTAAAGAACCGGACTCCGAC
TTGCAAATAATATCATGCGTTGATAGCTCTACAAATGTGGAGTTGACGGA
GAAAGATTCACCGTTAGAAACCCAGACAAATTCTACAAAGAGTGACTTAT
TATCGAAGCCTGGAAAAAGCGAAACTAGTATGACAGGTGATTCAAAAAAC
AATGTCTTACCAGAATCTAATAAAGGAGAAAATAGCGTAGACGGTGTTAA
AGAATATCAAGAAAAATCTGAAGACGTTTTACTGAAATCGTATGAGGAAG
GCATTTTTCAGGCTATCGGCTTTAAAGAGTTTCACAAATACCTGACATAC
ACTGGTATCGATGAATCTAAGAAACAAAAACTGTTACAAGCATCTCTTGA
TAAACTGAAACAAATCACGATCAAGTATTCTAAAAAACAAGTTCGCTGGG
TTATGAATCGAATAGTGAAAAGACAGGCTGTAAACACTCTACCTGTTTAT
AATCTGAACGCGTCTGACATAGCAGCTTGGGACGAGCACGTGTGTAAAAA
AGCTAAAGAGATTACGCAATGTTTTATGAAAGATGAACCTATCACACACG
CGCCGATGGCAATTTCGGACATTGATGAAAAGGTTACGGTAACCGATAAA
CATCGAAAACACGTTTGCGATGATTGTAATGGACGTATTATCATAGGGGA
TGACGCTTGGGAAATACATTTAAAGTCTAAGAGACATCGAAAAATGAAAG
TAAACAGAGCGAAGAAAATGCAAGTGTCAGCACAAACTTGATTGAACCAT
TTTTAGCGGATTTCTTTCGGAggaaattttttaatctttcGGAAAAATTT
GTTGGTCAGAAATGACTAGTGAAATGAACACTTGTTGGAAACTCAAAACT
GGATTTTCTTATAATTAATACTGGGTCATACTAAgagttagttcatctaa
tgtttccagctcacccaaatagagacttatacgcCTGCGTAattttgcgt
tcttttaaaccacatatAGAGGAAGAGGAATGAATTTGtaggtggtacag
tcactttcggtcgcggttgtggatggc
Run BLAST on NCBI

transcript from alignment at scaffold_464:271674..291313-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067158 ID=TCONS_00067158|Name=TCONS_00067158|organism=Clytia hemisphaerica|type=transcript|length=19640bp|location=Sequence derived from alignment at scaffold_464:271674..291313- (Clytia hemisphaerica)
TGGGTATTTGATAAGATTACCGAAATTATGAAATTGTAACACTCGTTTTT
GTTTTCTTCAACTATAATGTGGAGCAACGTAGACATTTTTCGCGCGCGAT
TCGCTTTTTATACCAAAATGGTAGGCAAAGTAGCGGTGTTCATGCAAGAG
CACCAGATTCTCAAAGAAAGATATAGCATGCACATGGAACATTTTAGCCT
GGCCTTGTGATTTAATTTGATTTAATTGTTTTTTTACTTATTGAATTTTA
ATTGGTGATTGGATACATAGTATGTAATGTCAGAAGTTGAGGATAGACAA
ACTCTTCTCCAAAAGCTGTTAAAGAAACTTCCTTTTCCTGCTTGGGTTTT
TTTGCTCATTATTTTTGGACCCATTCTCCCTGTTGTTGTTCTCATTGTTT
ATTGTATTGATTGGTATTGCCAGGTATCTTTTATATATAATATTATATCT
TACATACTAGCCGTATTGTATAAGGGTTGCGAAGCGATCCAGACTCCACC
TCAATTCGCAAGTTGCTAGCAAAATAAGAGACACTCTAAAAATCCCTCTA
ATAAATAAAGCCGCTATAGAAACAGGGTCGTAAGCTAAGAGCCTTAATGC
CCCAAACACACCACATAATCTACAGAGGCACAACACCCGCCGCCGCCCGC
CGCGCATCGCTCTTTTTTTTTCCTTCTAGTTATTCTAGTGTAAATGGTGC
CTTAATCTGAGATCTCTAGCTATCAACGAGTGGGTGTGAGAACAGGACAG
GTCAGCGAGAGTAGTTGAAGACATTTTTTAGACATTTGTGATTTGACATT
GCGTGAGAAGGTGCACCGCTTCCCAACATATTCCTATGTATCCTAGGCTT
TATTCATGTTACTTACTTTTGGTTACTTTTGGTTGTCTTCGAGCTTCATG
CTCTGGCAAGAAACTTTCTGCTTCACACCACAATGCTGCATCCATCAAAC
CTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TAATTCAGTGTGTTGAATTTTGTGCGTGGCTCTTGTTGATCGTCGTCCAG
AAAGGAGTTTTGAACTTTCAGAGTTGTTGATACTAGTACAATTTCATGAT
GTGATGTGCTTTGCAATACAGGTAATGTTGTGTAACTGTGTATTATTTGT
TCGTTGTTAGTGAAAACAAGGTCTAATGTATTTCCATCCTTGTGTGTTGG
CAAATCGATATATTGTGACATGAAGAATACGTTGCAAAACTGATTCAAAG
AGTTTAGGATAAGACGGTCGTTGATAGTACATCCTGATTTTGGAAGGCCC
TCAGGCCAAGTTGCTTTTGGAAGGTTGAAATCACCTCCAAAAATGATATT
TGGTACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATATCCCTGTAGACGAGTTACTTCGACCAGACCGTAAACCTGAGACAAGA
TTATAAAAAACTAGACGGTGAAATAGTTTACGGTCTGGATATCCAGGCTA
CCTTCTACTCTGTTTGTGTGATTTCGTAGTATAGCATTTAGTCAAAACGA
ATAATAATATAGAAATAACAGAGTAGCCGGGTATTTTTGTAGATGCCAAA
TCTGGTCGCAGAATTCTATTGGCTGTTAAACAATTGTTGAAATCACGTCA
TATTATTGTTTTCATTGGAAGTGCGCGAACCTGATTGGCTAACCTTATCA
ACGGCTTTCTTGGTACGAAATTCAAACCAAATGTAAACAAATTCAAACTG
GGTCAAAAATACCATACTCTCAATGAGTAGCTTCTGATGGGATTATTTCT
TATGTGGTGTAAGTTTGAATAGAGAGTATGGATCTCCAGACCAAAAAGAT
TGTGACAGGTATCCTAATTTGCACTTGTTCTTGACTGTACTAAACAAAAT
AGAACGAAAATGGGTTAATGTAAACAAACATGCTTAGTGAATTTTTCAAT
CATGATCTAATCACATGATATCATGTGGACTGACCTTTAATGAAATTGAA
TTTGTCACATGAGCTATATTCGAAAGCATCACTGGTCAAAATGTCAAAAC
TACCATGAGTCGGCTGATTTTTTTTAAATATGCGTGTGCGCAATTAGAGG
AAGTGCACCGGAACGTTCTGGAGGTCCGGTGCAGACCAATCGCCGGAACA
CTGGAAGTGCTACAGAATCTTCCAGAGCAAAAAAAAACGGCACTTTTTGA
TCCGGATGTTTCCGGAGCGCTAGGAGGGTCCTCAGAGAATACTCGGTGTA
GGCTGATGCAAGTTCCCCCTCTCTGATGTCAGAGGGGCAGGGAACTACTC
AAAACAATTTGTCATAATAAAATCTGACAATTTGTAAAAAGAAACACAAT
TTTAGCAACTCTAAAAATGCAATTTTCGGGTCACAGGGCTGGGGTTGCTG
TTCTGATAGCTCATTTTCTGAAAAATTAGCTTTTACCACCTTGACTTGAT
ACTTTATAATCGGAGTAAATTTTGCGAGAAAAATTCTGTGAGCAGAAAAA
TTCCCAAAATATTTCTGGATTTAATTTCGCGCGTCAGAGTTTTGAAAAAT
TTTGTATGGATTCAATTTTGCCTTAAAACAACTAAGAAATAACCATTTTT
TGCCACAAATGGAGACTTTGGACTGGTTCCTCTGCCGAAAATGCAGTTTT
AAAAATTTTGTGGTCTATTTAATCTTGTGCGTTTTTTGCAAGTTTTAATT
TCCTGAAAATGGCAAAAATTTGAAATCAATCACAAAATTTAAAAATCTCA
CGTAAGTTAATCCAATCAAAGTATTTCTGTCAACTGCTCTAACTTGGGAC
GATTGGTTGAAACATGGGACTGGTTGATATCTGGCCTGTATTTTCACATA
CTATTAAATCTCTCAAATTTGTTTTGATAACTCCACCAAGTTTATCAATA
ATACTTCTTCGTTCCTCTTAGAGTGCACAGACATTCCCGCGTGTTCCACT
ACAGATTTTTTTCATATTTCGATTTAAAAGCCTACTCGGTGCGAAAGAGA
AATCGTGTATTTTTTAATACTCCTTTCATTAACTCAAATCAAATGTTCGG
TGAAATGGTGGCAGAATTGCCGTCCCATGTTTTGTCAGATAGTCCCAAGT
TAGAGCAGTTGACGGTATGCCATAGTACTGTATGCTTATTGGATCACAGG
CTATTGTTTGCAATGTTTAGATTATCTAAAAGGCTTTTACATTACAAGAT
AGTGAAAAAAATTGGCTAATTTCAGGGCATTTGGGTATCTGACGTTTAGT
TTTTGAATTACTGTACATAATCTTACGCATTTGAAAAACAGAAAATGCCA
GGTAGTATATCCCTAATCAGTTTTTGAAGTTTGCAAAAAAAAACAAATCA
GCAGTAAAAAACTACAACTTATGTATTTTTCCTTTTTTTTTGCAAACTGA
TGATTTGCACCACTTTCTATCAAGCTAGAATTACTTCGCATACTCTTTGC
TTGAGAAAACTATTGACAAATTAAAAAAAATTTCACCCATGAGGGAGTTC
GCTGGTATTCTGCGAGGTGGCTTTTTTAATTTTGCCCAATCTGCTATGTT
GTATAAGACAAATCAATAAGATGACTTTATCATTAAAAAATTTACCAAAA
TTATTTTTTGCAAAAACTAGGCACATTCTAGTGGCGTTCTGGAACATCGC
AAGGTATAATCTTTTCAGGGTATATATATATTTCATTCAGGAAAATCGGA
CTGCTGAATTCTATTGCTCCTATTGCTTTTTAGTGTATGCTTATGCCTTG
CAATCAAGAAGTTATTGAAGTGGATGAAAAAGATAAAGAAGATTGATTTC
ATTGTGTTATTGTAACATCAACATAATATTGTAAGTTTTGGCCGCCATCT
TTGATCAAAGTTTTTTTTGATTTGGTACCTGTAAAGAAGCCATTGCAGTT
TTTATGAGTATTTTTGGAGCCCCTTTGTTTTTGGCAAATTTTTAGGCACT
CCCTCCGATTCGAATTTTTAATTCGTCTAAATTTCAATAACTCGGATTTT
CTCTCGGAGACCCCTTTTTCTTCACCATTTCTTGGACCGTTTGTAGGTTT
GTTCATGTTTGTACCTTTCTTCAAAAGAATGATGTCATCAACAATGAACT
CGTGCTACAAGGACACCAAATTGGTTGTCATTCTGGGTAGTACGGCGGTT
GGCAAAACAAAGTTAAGCATCGAATTGGCAAAAATGTTTGATGGGGAGAT
TATTAGTGCAGATTCTATGCAGGTTGGTATAAGTTAGATATTGGTTGTTA
ATAAATTAGTTTAAGTACTTTAATGTATCTCATCTTTTCAACAGCACCCT
TTATTGTTTGCTATGACATTTTTCATATGAAGATTGTAACCTTTAAAATC
CTTTTTTTCCCACGTAATAAATTCTGTTCCCCAAAACTTGTAGTCTGCAC
ATTTTAAAAATTTACTCTTGAGGGAAAAAAATTATATGAATTAAAAGTAA
TATCTCGTTAGAAAGATAATTTTGAGTGGCTTGTTGAAGTAAGCTTTGTT
GAATTCTAAAGATTTGAAAATTTGAATGAAGATTCTTTCTACACGGTTAA
AAACTTTATTATATACCGGGTATAGCAAAAAAAAATTCCCTCAAGTTTGT
TTCTGAGACTTTGAACTCAGCTGATTTTATATATGGTTTCAGATCTGTTT
GATCAAAAATCACAACCCCACGAAAGTTTAAATGGGTGATCAATTACTAA
AGTTAGTCGAAATGGAATTCATAAATGCTCCAAGGTGTTTCATGTTTGAT
GTTAGGCGAGACCAATTTGATTAGTTGTTTTACAGGCCCGACCGACCCCG
AAATTTCAAAAATCGAAATAAAAATTAAATTAAAATTTTGGTAGTATATT
TTTATTTTCATTGCTTTACAGACTGCCAAATTTTCAAATTTTGTTCGTTT
TTCCAAGATTACGAGAATTCTATGTTCAATTTTATCTATGAATTCGAGCT
TTTAGTGTCTTTTTGTTTTCTTTTTCGCATTTTAGTTTTTGCTGGCTTTT
CGCCGACCGACGGACTCTCTTTTTTGGGTAGCAAATTTAACTGACCTCTC
CTTAGAATTGAATCGTATCTCTCGATATTAGTTTATACACTCTCTTTCAG
GTATACAAAGGTCTTGATATTATCACAAACAAAGTGACACCAGAGGAGAA
ACAATGCATACCCCATCACATGATTGATATCTTTGACTCCACCCAAGAGT
TCACCGTCATTGATTTCAAGCAACGAGCATTGAAAGTCATCACAGATCTG
GTAAAGAGACAGAAAGTTCCTATCATCGTTGGAGGGACAAATTATTTCAT
TGAAGCATTATTATGGGATTTCTTGATCGAAGGAGGGTTGGATGATGTGG
ATCCAAAGAAAGGTATAACAAGACTGTGCGCATCCCCAGAATTTATTTTG
ATATAGGGGATGTGTGTCGTGTATGAAATTACTGTCCGAAAGTTACCCCA
AAAAATGAAGTCATTGCGTTGCTGCTTTCATAATTATAAATTTTCATTCA
TTGAACAAAGAAAAAAAGTTGTTGTGTTGCTATGAAGCATAATCAAGAAA
ATAAAGAAGAAAAGACGGGGCTAAGTTGAGACATGAATATTGTAGACGAT
ACGTATCCCCTATATAAAAAACTATCAGGGGGATGCGTTCAACCTAAGGT
ATAAAACAAGAGAGCTAATAATAAAGTCTGCGACTGTAATGCCGTATTAC
TTCGAATAAACGCCCCTTTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCCCCCCCCTCCGCCTCATATTCGAAGTGATACTATAGGCCATT
CCAAGGTCGAAAGGAATCATCGTTAATCAGCACCACCGTGCTCTGATAAC
AAATTTCTGTTGGTCTAAAAGTTTGGAAAAGTTTTTGCGTATAAACAACG
GGTAGCCGTTATGGGACACAATCAGTCCTGATTAACCATGATTCATCCTG
ACCATGGATTTGCCTATCCAGGGTGAACCGAAGGCTCTCTTTTCTCAGGA
TTTCTCCATTTTCCCTGGACTTTTAATTGCTGAGCACACAAGAGGGGGGT
ATTTAGCGCCATTTTTTTTTTTTATGACCCGGCTAGGGGTCGAACACGCA
AAATTACACATCGTTGCACACCGTAGTTAAACTTTTCCTCTACCTTGCGT
AATATCGTGGGTTCAAACTAAAACAGCTCCAAACATGTGAGTGAAGGTAG
AGAGTCTATCACCATATTTTCGTAACACCCTACCTGGAAGAGCTTGGGAT
TCGAACACAGTCCAATGCGGTGAAAGTCTGTGATCGAAACCTTCACACTA
CCAATCGGCAGAATGTTAGTGAGATACAGTGATAGCCTTATCCAGCTGGT
GAGTGAATGTATACCGAACTTATCGTTCTACATCTGCAATTTGAGCGTTA
CTAATAAGCTCATTTTGACGTCAATCGATACTTCTCCAAACAGTTTATAC
CAAAGATTTAAAAAAAAGGACATAATGCATCGCTTTTCAAATGGTCTGCC
ATTAAAAATATCAATCCACATAGAAAGGTCTATTGTCCTTCTCTATCTTC
GGGTAGAAAGCTATCGACAGGGCAGCCTACATGATGTGCGGCAGGAAGAA
CTAAAAGTCTATTTCTAGGGCTTCGTCTTTAATATACAGTCTTGTCATTG
ATAGCAGGACTTTTCTTTTACAATTTTTGATACCTGTACCTATGAGTAAA
GTAAGAGACATTAATTGTTCTTCTTCTTCATATTTTATTTGTAGAGCTTC
GAAATCGAAAAGCATTTTTATTTCCCGGTTCAAAACGAAGACACGGTGAT
AAGAATGAGGTGGATGACGAAGAATCCGATCAAAGAGGTATGTTTGAAGT
GATAATCAGATTTTATGGACCTATATATACCTTCCATGGTCCTAAACAAA
GTCCCAATTTCTTTGCCAAAGGCTTAGCTAAAAAACTATAGAATTTCAGC
CTGAGAACTGTGTAATAACCAAAAAATTTAAAATGGTCATATCTTGCAAT
ATTGGTTAGTGGAATTAACGGAATGAAAATATTTTTCAGTTGATAACAGA
GATGTTATAGCAGAGACAGCGTTATATGATGAACTGATGAAGGTTGATCC
AGAACGAGCCAATCAATTGCATCCAAACAATCTACGAAAAATATCCAGAA
GTTTGCAGGTTTGTATCGCTTATCCATCCGCCTCACTATGGGCTATCTAA
GGGGCTACTTTCATATCAATTTTTCCCACGACGACTAACGTTATAATGAC
GCGAGGGGGTGGGGGTCAGAGGCAGTGACGCTAAGAAAATCCCTTAGAAG
ATTTTCGGTTTTCGGGGCTGATTCGAGCTGATTGAGTTCTAAATTTTCTA
ACAGATAAACCTAATATTTTTCTAATTTGTTAACTTTACTCGCCACGCTT
AGTTTCATATCTCTTTTTCGTGTCGATTTGCCAGAGACATACCAATCAAT
TTTTGAAATTTCCAAAAAAGGTCGATATTTTGCTCATGTAAAAGGTGTGT
GAATGGAAGGAATTACGATTTCATCGATTTTTAATGACTGACGCTAAGGG
TAGGGGGTAGGGGACCTTGGAATTAGCGTCTGAATGAGTTAGTCTTTTGA
AACATCGATATGTGAGTGACCCCTTATACAAAACACTAGATAGAATTACG
CTATCTTTCTCAAGCTATGGTACCTTAAGTGGGTAGATTTTGGTGTGGAT
TTAATTTGGCGAATAACTGAAATGCGACTTTTGGCGGGGATTTAATTTGG
CGAATGCTCAATTTTGTAAAATTTGGCGGGGATTTAATTTGGCGAAAGAC
AAAAAAAGTGTTTTTATTAAGGTGTTTTGTTGAAGTTTAGAATAGAAAAA
ATAATACGTGTAACATAAGATCGGTTATAAAGGTAAAAATAGTTTGTTAA
AATGTATACTGTTTAAAAATACAAAAATTTCTCGATAAGAAACATGATTT
TCCTTTAACTTTGGCGGGGATTTAATTTGGCGAATTGCCGAATTTGGAAA
TTTCGGCGAGGATTTAATTTGGCGAAATTTGGCAAAATTCCCCAAACTCG
CCAAATTTAATCCCGCCAAAATTTATCCACTTAAGGTAGCTCTAGGCTAC
GTCATATCTTTCTTCGTTTCGAGTGTAAAAGCCTGGAACTATCTACTGTG
TGGACTATGGTAGTTAGGTTTCGACAATGTTGTTTAATGAAAACAAAAAC
CTGATATGACGGGAAACTAGGAGGTTCTGATTGATCAAATTGCCTGCACC
GAACTGTGATCTTCCTAAAGCTTTAAAAATGGAGCATTATTTTGATTCAG
TCATACATATCTGTGGCTGATAAGTGTTTTTCGATTTCTCCTTCCAACAG
ATTTACCACACAACCGGGGAAACGCATTCAAGTTTAATGAAAAAACAACA
AGATCAACCAGGCTCAAGCAAGTTGAGTAAGTCTACAATGTTTATGTTTT
TGAAATATGTGATATCGTTCCTGTGTAACGTAAATCACTGCGATATACGA
TATGTTATGTGGTACATCTAATTGGCATTCTCGCAACTTTTTTTATCATA
AGGACTACTAATTCATGATATTCATGACGTAATGTTTTCTACGGAAAGAC
CCTGGTTTTTGTCTAGTTTAAATTTTCCACTACTGGCTAAAACCCGGATA
TTGCTGTTGAAAACATTACGTCATGAATATAGGGGTTACGGTTTATAAAC
TAATTCGAGTATGATGTCAATAAATCTCTCTCTACTTGTGTTTTTTGGTG
CTAAATCTTATCGGTGAAATCCTTTGCAAAAAATATTTTGATTTTGTTTA
TTTTTTGACTAATCACACCTCAAAAGCTTGGCTGTGCGATAAGAAGCTCA
GTGTATTAAGGTTTTCATCCGGCATAGAGCCTGATAATGTGGGTTTTCTA
AATTTAAGGCGCCTAATAAATTTGGAAGTTAGGTTTTACGAATTTCGGCC
CATCAAGTAAAAGCAATTATTACAGGACTAAAGGCAACAGCCATTGCCCA
TCCTTCATGTGGACCTGTCTGGAATCTTTCCGGACAGCGGAAAAAACCCT
TGAAATCCGTTCCGGGCGCGAGTTTTTGTCGGTTTTTGACAAAAATTTGA
GGACTTGTGGAGGACTCCCAAACCTTTCAGTCGCCAACTAACAAACATTC
ACGAATAGAAGCTTTGCTATTATCACTCTCATTTATATTCTTCTCTCAAA
CCACCACGTCAACCATCAGGTGGTCCTTTAAGGTTTCCGAAAACTTTGCT
ACTATGGTTAACAGCTGACCAAACAATCTTAAACGATCGAATATCAACAC
GAGTTGACCAAATGCTTGAAAAGGGACTTGAAAACGAAATCAAAACATTT
TATGAAAAACATTTAAAAGCGAATGAAGATTCGAATGTTGAGACTAAAGA
ACCGGACTCCGACTTGCAAATAATATCATGCGTTGATAGCTCTACAAATG
TGGAGTTGACGGAGAAAGATTCACCGTTAGAAACCCAGACAAATTCTACA
AAGAGTGACTTATTATCGAAGCCTGGAAAAAGCGAAACTAGTATGACAGG
TGATTCAAAAAACAATGTCTTACCAGAATCTAATAAAGGAGAAAATAGCG
TAGACGGTGTTAAAGAATATCAAGAAAAATCTGAAGACGTTTTACTGAAA
TCGTATGAGGAAGGCATTTTTCAGGCTATCGGCTTTAAAGAGTTTCACAA
ATACCTGACATACACTGGTATCGATGAATCTAAGAAACAAAAACTGTTAC
AAGCATCTCTTGATAAACTGAAACAAATCACGATCAAGTATTCTAAAAAA
CAAGTTCGCTGGGTTATGAATCGAATAGTGAAAAGACAGGCTGTAAACAC
TCTACCTGTTTATAATCTGAACGCGTCTGACATAGCAGCTTGGGACGAGC
ACGTGTGTAAAAAAGCTAAAGAGATTACGCAATGTTTTATGAAAGATGAA
CCTATCACACACGCGCCGATGGCAATTTCGGACATTGATGAAAAGGTTAC
GGTAACCGATAAACATCGAAAACACGTTTGCGATGATTGTAATGGACGTA
TTATCATAGGGGATGACGCTTGGGAAATACATTTAAAGTCTAAGAGACAT
CGAAAAATGAAAGTAAACAGAGCGAAGAAAATGCAAGTGTCAGCACAAAC
TTGATTGAACCATTTTTAGCGGATTTCTTTCGGAGGAAATTTTTTAATCT
TTCGGAAAAATTTGTTGGTCAGAAATGACTAGTGAAATGAACACTTGTTG
GAAACTCAAAACTGGATTTTCTTATAATTAATACTGGGTCATACTAAGAG
TTAGTTCATCTAATGTTTCCAGCTCACCCAAATAGAGACTTATACGCCTG
CGTAATTTTGCGTTCTTTTAAACCACATATAGAGGAAGAGGAATGAATTT
GTAGGTGGTACAGTCACTTTCGGTCGCGGTTGTGGATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041956XLOC_041956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067158-exon-scaffold_464-1575043694:290891..291313TCONS_00067158-exon-scaffold_464-1575043694:290891..291313Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1575043694:278384..278480TCONS_00067158-exon-scaffold_464-1575043694:278384..278480Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1575043694:277992..278136TCONS_00067158-exon-scaffold_464-1575043694:277992..278136Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1575043694:276852..277113TCONS_00067158-exon-scaffold_464-1575043694:276852..277113Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1575043694:275277..275369TCONS_00067158-exon-scaffold_464-1575043694:275277..275369Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1575043694:274956..275074TCONS_00067158-exon-scaffold_464-1575043694:274956..275074Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1575043694:273697..273763TCONS_00067158-exon-scaffold_464-1575043694:273697..273763Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1575043694:271674..272894TCONS_00067158-exon-scaffold_464-1575043694:271674..272894Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1510915933:290891..291313TCONS_00067158-exon-scaffold_464-1510915933:290891..291313Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1510915933:278384..278480TCONS_00067158-exon-scaffold_464-1510915933:278384..278480Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1510915933:277992..278136TCONS_00067158-exon-scaffold_464-1510915933:277992..278136Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1510915933:276852..277113TCONS_00067158-exon-scaffold_464-1510915933:276852..277113Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1510915933:275277..275369TCONS_00067158-exon-scaffold_464-1510915933:275277..275369Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1510915933:274956..275074TCONS_00067158-exon-scaffold_464-1510915933:274956..275074Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1510915933:273697..273763TCONS_00067158-exon-scaffold_464-1510915933:273697..273763Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1510915933:271674..272894TCONS_00067158-exon-scaffold_464-1510915933:271674..272894Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1491911889:290891..291313TCONS_00067158-exon-scaffold_464-1491911889:290891..291313Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1491911889:278384..278480TCONS_00067158-exon-scaffold_464-1491911889:278384..278480Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1491911889:277992..278136TCONS_00067158-exon-scaffold_464-1491911889:277992..278136Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1491911889:276852..277113TCONS_00067158-exon-scaffold_464-1491911889:276852..277113Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1491911889:275277..275369TCONS_00067158-exon-scaffold_464-1491911889:275277..275369Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1491911889:274956..275074TCONS_00067158-exon-scaffold_464-1491911889:274956..275074Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1491911889:273697..273763TCONS_00067158-exon-scaffold_464-1491911889:273697..273763Clytia hemisphaericaexon
TCONS_00067158-exon-scaffold_464-1491911889:271674..272894TCONS_00067158-exon-scaffold_464-1491911889:271674..272894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_464supercontigscaffold_464:271674..291313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3826	10.7969	5.171	3.79229	6.88774e-05	0.236452	0.0113268	0.0023924	1.53172e-06	0.479643	0.038863	0	0.000102886	3.65897e-06	3.51443	3.82281	3.56098	3.18949	0.906106	1.44616	1.6782	1.87113	10.6169	8.46033	9.19916e-10	0.00104597	1.3006	1.32813	6.47326	8.59568
Blast
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BLAST of TCONS_00067158 vs. Swiss-Prot (Human)
Match: MOD5 (tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens GN=TRIT1 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.778e-56
Identity = 113/287 (39.37%), Postives = 169/287 (58.89%), Query Frame = 3 
Query:  525 MSSTMNSCYKDTKLVVILGSTAVGKTKLSIELAKMFDGEIISADSMQVYKGLDIITNKVTPEEKQCIPHHMIDIFDS-TQEFTVIDFKQRALKVITDLVKRQKVPIIVGGTNYFIEALLWDFLIEGGLDDVDPKKELRNRKAFLFPGSKRRHGDKNEVDDEESDQRVDNRDVIAETALYDELMKVDPERANQLHPNNLRKISRSLQIYHTTGETHSSLMKKQQ---DQPGSSGPLRFPKTLLLWLTADQTILNDRISTRVDQMLEKGLENEIKTFYEKHLKANEDSN 1373
            + S +    +   LVVILG+T  GK+ L+++L +   GEI+SADSMQVY+GLDIITNKV+ +E++   HHMI   D     +TV+DF+ RA  +I D+  R K+PI+VGGTNY+IE+LLW  L+     ++  +K + +RK                V+ E+ D  V          L+  L +VDPE A +LHP++ RK++RSLQ++  TG +HS  + +Q          GPL+F    +LWL ADQ +L++R+  RVD ML  GL  E++ F+ ++ + N   N
Sbjct:   12 VGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQVYEGLDIITNKVSAQEQRICRHHMISFVDPLVTNYTVVDFRNRATALIEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKPQEMGTEKVI-DRK----------------VELEKEDGLV----------LHKRLSQVDPEMAAKLHPHDKRKVARSLQVFEETGISHSEFLHRQHTEEGGGPLGGPLKFSNPCILWLHADQAVLDERLDKRVDDMLAAGLLEELRDFHRRYNQKNVSEN 271

HSP 2 Score: 124.02 bits (310), Expect = 7.545e-30
Identity = 65/164 (39.63%), Postives = 95/164 (57.93%), Query Frame = 3 
Query: 1599 KEYQEKSEDVLLKSYEEGIFQAIGFKEFHKYLTYTG-IDESKKQKLLQASLDKLKQITIKYSKKQVRWVMNRIVKRQAVNTLPVYNLNASDIAAWDEHVCKKAKEITQCFMKDEPITHAPMAISDIDEKVTVTDKHRKHVCDDCNGRIIIGDDAWEIHLKSKRH 2087
            + Y +K+     + Y+ GIFQ+IGFKEFH+YL   G        +LL+  ++ LKQ+T +Y++KQ RWV NR + R      PVY L  SD++ W+E V + A EI Q F++    T  P+ +   + +    +K   H+CD C+ RIIIGD  W  H+KSK H
Sbjct:  261 RRYNQKNVSENSQDYQHGIFQSIGFKEFHEYLITEGKCTLETSNQLLKKGIEALKQVTKRYARKQNRWVKNRFLSRPGPIVPPVYGLEVSDVSKWEESVLEPALEIVQSFIQGHKPTATPIKMPYNEAE----NKRSYHLCDLCD-RIIIGDREWAAHIKSKSH 419
The following BLAST results are available for this feature:
BLAST of TCONS_00067158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MOD52.778e-5639.37tRNA dimethylallyltransferase, mitochondrial OS=Ho... [more]
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