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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067149 ID=TCONS_00067149|Name=TCONS_00067149|organism=Clytia hemisphaerica|type=transcript|length=3061bp
TtcaggaaagaaaaaaaacaacgatgGATCAACaatctttatataaaaaa
atactgTCACTGCAGCCAAGTCTAATTGATCCTACAAAATGTCATCCAGG
AAAATCGTTATATGCACAAATAAAACGAAATAGTGAAACGACATTGCAGC
GtcaaaaaagacaatttaattTGGGGAATTCGGAAACATTCTCTGATCCT
ATCATAGCAGCCGACTATCTTCTTGAAAGGGAATACGGCGAAACAGCACT
TTTTGACACTACTCAACATGGAGCTGTCTTTATACCTCCAACGTTTGTTT
CAAAGCAGTATATAAAGAAATCGACTGTTGCGGTTCTTAATTATGATGTA
AAAAAAGACATGGAAAGACTTTTGAATAATTTGTTGCACCATTCACCGAA
TTATTGGCTCACTAATGATCTGCAAGATTTTATAAGCTCACAAGGCTTTG
GTGATACGATTAATCAAAAGTATTTCAGTAAATGGATCCTGAATCTTAAA
ATTAAGTATCTAATTATGCAAGAACTCAATACAGATGAAGTTTGCTTACC
ACCAACAACTCTTGAGCCTGACGTATTTATAAAAGGTTGCATCCAAGAAT
TTTGCTCAGAATCAACTAAAACATCAATGATAATCCTGTTGAGTGAATAT
TCAAAGATCCCATTAAAAAAACTATTAAGGCAGAAAGTTCACGAAAACCC
TCCAACTGATTCCAATCTTCGATGGCTGTTTGACTTAGAGATATCAGAGC
TAGGAGAGAAAAATCTACATGAATTCTATGATATACTTTCATCATTACAG
GATGATGATGTTCTCAGTGAAACAGTTGTTCTTTCTTCAATCGATTTTAT
GAGAAACGTTCGAAATAAGATGCATCAGGAAATGGATTTTATCATTATAT
CATGGCCACGAAAGCTAATTATCTGCATAGAATCGAAACGTACTATTATT
ACTGACAGGACTTTCGACTTGTTGAGTAATCATTATCTTTTGTTGGAAGA
AAGATTTAGCGACCAACTTGGACATGGATGGACCTTTTTCCCAGTTGTTT
TGActgaaattgataaattttcattttccagtcGTCACTACATCACAACC
TGCACAGACATCAAATCATGGTTGGTGAGTATTTTTCAACGATATCCTGT
AGTTCAAATGTGGATTCCGTTCAAAAATACACTTAACCAAACTAAAGATG
TATTAAGATTGATGATTTTTGCATTACATGCCTCAAAAACAGGCCAAATC
GCACCAATAACCACCACAAATTGGGTCGAATGCATCAATTCAGCCATCGA
TAATGTAGCTACCAGTCACAATATCCTGTTTTATTCCAAGGAGCAATTAG
CGGTGATGGCCACAGATAATGATCAATTCAATAAATTAATTATCATGGCT
GGTTGGGGTGCTGGAAAAAGTCTTTTGCTCACCAGCAAGGCTATTCAATT
GAATTCGGATCCTTATTACAAAGGGAGAGTTATGTATGTGCTCGCAAACG
GACCTTTCAAGGGAATAAATACAATGCTCTATCATCGGTGGAAACTTGAT
TTGGAGGAGAATTATGGAATCTTTGTCAAAGAAATTGCTAAAAAAAAATT
GTCGAAGTATCGTGGAATCGACAAAGATGGTTGCAGATGAAACAGACTAC
CTTTATAAAGAAGGTATAGTGACGCCTCTACCCAATTTCCCCTCTGGTCG
AGCACCGTTGTTTGTTAGGACACTGCGAGACGCAGTATGTGAGTCACGGA
AGATAACCGATGAAGGGATCTTGGTAATAAAAAACGATTTCAATGGGAAT
GATATGGTAATGCTGGATGAGATGAAAGAAAAATGGAGGATTTACAGTTT
TGATCGAAATGATTTTCGGCATAACGAAAACCCATACACATATCTCCAGG
ATGGACATATGTTAATAATTAATGGTTTTCTGGCTATAGGCTTTGAGTGG
CCAGTGGTGATCGTGTTTGGAGATATGAGTAATGATGTAACTTATCATGA
ATGCAATTATATGATGAGGTGTTCCACTAGCCTTATTATTGTAAGATGTC
AGTAAGCTGTCCCAGTGTCGTCCATGACAAATGTGAATTATAAATTTAAA
ACATGTAcgcgcttttttttataagaatagtgtactttggatgagggtca
agttttcttaagaaattgccaaaattgaggatgaaatattcttaacgtat
ttttactttttcagacttgacttttttacaaacatgagaaatgattaatt
tgagagttttggacttttgagtgaacatttgggttaaaattacatttctt
cctcaaagcttcaatttatctctaacaaagtaagcagttttttctgttaa
ccaaatacaaaataactGTATACTTGTCAAGTTCTgtgagggtattctta
gggtattcttacgatttggccaattttcaccctgatattcttatagaaga
tattcttataaaaaaaacgtgttatCCGAGAGAATTaggttttttgactt
taaaaaagcaACGTGGCTGAAATCTggaattaacatctttttaagcTTAC
GGTCTGAGAATTAAATTTCCGTCCAAACAGTATATAATACTTTGAGGTTT
GTGACCGAcaaaaaattaccaaattttgatgacgtcatttgttaACTTCC
ATAAACTTTATTGctttcatttttcagaaaaatttattcaGAGTTAAATT
TCCGTTCCAATACTTGATAGTTTGgatacttttaaaaaattttcatgacg
tcagcAATCAGGTGGTTTTTAGGCGTGTCCCCGTCAATTCTTTTTCAGAA
TATCATCAGGGATGTCTGTACTAAGTTTCATACTTTTTTAACCCTATGCA
GTATTGTTATGCTTAGCTACCTGGCTAAGAGGTACCTTTTGGGTTCTAGA
ACCAGAAATTACCCGTTAAAAGTTGTTtaactatatttttttttttatga
tgacgtcatttttagtactaaaagaatatttaagtAAATATATTATACCT
ATTTTGTGTAAGCAATTTAATCAGTATTGTATAAATAATAGTATTTGGgg
ctccaaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_464:222412..230359+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067149 ID=TCONS_00067149|Name=TCONS_00067149|organism=Clytia hemisphaerica|type=transcript|length=7948bp|location=Sequence derived from alignment at scaffold_464:222412..230359+ (Clytia hemisphaerica)
TtcaggaaagaaaaaaaacaacgatgGATCAACaatctttatataaaaaa
atactgTCACTGCAGCCAAGTCTAATTGATCCTACAAAATGTCATCCAGG
AAAATCGTTATATGCACAAATAAAACGAAATAGTGAAACGACATTGCAGC
GtcaaaaaagacaatttaattTGGGGAATTCGGAAACATTCTCTGATCCT
ATCATAGCAGCCGACTATCTTCTTGAAAGGGAATACGGCGAAACAGCACT
TTTTGACACTACTCAACATGGAGCTGTCTTTATACCTCCAACGTTTGTTT
CAAAGCAGTATATAAAGAAATCGACTGTTGCGGTTCTTAATTATGATGTA
AAAAAAGACATGGAAAGACTTTTGAATAATTTGTTGCACCATTCACCGAA
TTATTGGCTCACTAATGATCTGCAAGATTTTATAAGCTCACAAGGCTTTG
GTGATACGATTAATCAAAAGTATTTCAGTAAATGGATCCTGAATCTTAAA
ATTAAGTATCTAATTATGCAAGAACTCAATACAGATGAAGTTTGCTTACC
ACCAACAACTCTTGAGCCTGACGTATTTATAAAAGGTTGCATCCAAGAAT
TTTGCTCAGAATCAACTAAAACATCAATGATAATCCTGTTGAGTGAATAT
TCAAAGATCCCATTAAAAAAACTATTAAGGCAGAAAGTTCACGAAAACCC
TCCAACTGATTCCAATCTTCGATGGCTGTTTGACTTAGAGATATCAGAGC
TAGGAGAGAAAAATCTACATGAATTCTATGATATACTTTCATCATTACAG
GATGATGATGTTCTCAGTGAAACAGTTGTTCTTTCTTCAATCGATTTTAT
GAGAAACGTTCGAAATAAGATGCATCAGGAAATGGATTTTATCATTATAT
CATGGCCACGAAAGCTAATTATCTGCATAGAATCGAAACGTACTATTATT
ACTGACAGGACTTTCGACTTGTTGAGTAATCATTATCTTTTGTTGGAAGA
AAGATTTAGCGACCAACTTGGACATGGATGGACCTTTTTCCCAGTTGTTT
TGActgaaattgataaattttcattttccagtcGTCACTACATCACAACC
TGCACAGACATCAAATCATGGTTGGTGAGTATTTTTCAACGATATCCTGT
AGTTCAAATGTGGATTCCGTTCAAAAATACACTTAACCAAACTAAAGATG
TATTAAGATTGATGATTTTTGCATTACATGCCTCAAAAACAGGCCAAATC
GCACCAATAACCACCACAAATTGGGTCGAATGCATCAATTCAGCCATCGA
TAATGTAGCTACCAGTCACAATATCCTGTTTTATTCCAAGGAGCAATTAG
CGGTGATGGCCACAGATAATGATCAATTCAATAAATTAATTATCATGGCT
GGTTGGGGTGCTGGAAAAAGTCTTTTGCTCACCAGCAAGGCTATTCAATT
GAATTCGGATCCTTATTACAAAGGGAGAGTTATGTATGTGCTCGCAAACG
GACCTTTCAAGGGAATAAATACAATGCTCTATCATCGGTGGAAACTTGAT
TTGGAGGAGAATTATGGAATCTTTGTCAAAGAAATTGCTAAAAAAGTAAG
TCAAATATTTGTTTCgtatatacagggtgtccggaaaaaaagtatcgagt
cgtacacttctatagaaagaaagttcttgtatGTGTTTCACTAAAATTGT
GATGTTTAccaaagtttctctctgtgtcatattaattgtcatgagacatc
ttttatgaataacttttacaaaaaataattctCGATAACTTTAATGTcat
aaaaattgtaaagaattaatttttttttatcataatgactgttgtaaaaa
caattattttgtgggtatatattttcttacattttgttaaacacacgcaa
caaccttctactcagaatcatgttcgaataTCTGATACtattttttccgg
acaccctgtataagaaAGGTCCATGGTTGACCTTAGAGATCTCCTCAGAG
AAGATTCGCGATAAAAATTATCtacacgtttttgttttttttaacccTTA
GGGGGCGAAAGATacataccgggtgacccacgaaaaagttcggacgtttc
tcggcgtcttgaggccgaacaaatgtcccaaagtgcttggagttttatta
tttagaaagtaNNactcgttaaataagtcaatttataagagattttctaa
ttgattgcattaatttaatacctctttttacgtgttttttacactttccg
aaaagtgaattttgagtttaaaaggtcataagtagagaactagttggtca
aatttaaaaagtgatNtcaaattttaagttaggatatctactttttaaat
accaaaattccgagcactttgggacatttgttcggcctcaagacgccgag
taaggtccgaactttttcgtgggtcacccggtacgttttgaaaaggtcat
tttaccgatacacagtcttttggtcataactcctgaccacttgagattca
gagaaaaaaaaatctgctattttttgtagctgagagaaagagctttcgaA
CGATACCAAAattgatacctgaatcgtttgtcctggtcgagaaattgcct
ttgaaagaataaatttccagaaaaaaatgatgagttttttggcctttttc
aaaaaagttagcggctttgaaaggttaagaaaatagttttaccaagcagc
ctcaatgtttcttaagaaatcggccttttgagccttaaatgtttcttaca
tgtttctcaattttttgacataatcagcctcatggaaggctggattggaa
ggttcttaaaaaaaactgaattaaagtctattcacgataagtgtgcactc
ttttttcatttacctataacttttgaaggaattcttcaatctttataaat
ttggtatcattggaaagatattactgagtggaacaatttgaaataaaata
ttttttgaaaaaattctaaaaacgaagatgaaaatgaagaagaaaaaatg
aagatcttgtagcgaagagctataactttcattttcactggagtgaatcc
ttgattatcgaacgtcatcactgtgaaataatttctcaaaaataatcatt
cagtcaaaagatatcaaacaaatttataagctggttgacgtctaaaaacg
ctgttttctgctgttttctgctgttttttggggtcaatcacttgttaact
ttgtatcataactttatattgaataaatattttagtgaaatttctttacA
GTGACGACCTcctaaaatcaaagaatctctccagtgaaaatgaaagttat
agcacttctctaaaagatcttcatttttttcttcttcattttcattttcg
tttttagaatctttttaaaaacttttttatttcaaattgttccactcaca
aatatctctccaacgataccaaatttataaagattgaagaattccttcaa
aagttataggtaaaagaaaaaagagtgcacaattatcgtgaatagacttt
ttaaaaaatgttattttctcattctcagcctcagcatgtttcttagatat
gtcttagtttttaggcattctgaacctcgtttttcttaaaagtttgtttc
ttaaaaaaatcgtGTATGCTACCCTGTTAgtatcaaaagtatcaaaaata
gCATCATGTTAGCAGTATAGTGCCAGGGGCTATTTCCCTCTCGCAAAATA
GGAAGGGTCGCAACTTTattctttaaaaattcaaaataacatttCTCTAA
TTAGTAGGGGGGGGCTAACTCTCAAGATCCGTGGTTATTTGATTAGATGA
TTAGTCCATTCCATtcttttttagtgtttttccTATTCTACAACATCTCG
TTTCCAATAAGAACTTAAAGTCCTTTCATGGAAAAGAAGCCCTTCAAAAT
ATCTTTAGCAAAATGTTTAATATATGTGCGGGTTCGCGCTAAAGCCAATC
GAGCCTATAccttgggacaagctggagtttttacaagctctcgtttgatt
tggttggtcgttaacctgtaataaaacaattttgttactttttctaaaga
acgcgtcatctctattacttcaaataaccaattagtgaagtctcttgtaa
aaactccagcccatCTCTATACCTTACCTATAACTTTCACAAATcgatgt
tttcaaaatatttcgcaAGAAATACTTTCGCAATTTGTCaacttttattt
gtttttattccaaatttttcactacagtatatggcccccaaaacggagac
ggcccccaaaacggaggttttcattaaaatgaagattctgacttgtagat
ttatcagaattaaacgatttttgNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggttttcatg
cagcaaaaatttttgtaaaatctcttttcctctagatttgagagaaattt
caaatttgatcgccgttttgggggccacatactgtaagacgaaaataaaa
caatgtagtgtttccggaatgcgggtgaaggaaaaaagctttcatgcggc
cggccggaaaatatatttttttgctttttttgataacttaagatcattga
aatagaactttaaagataacttttatgtagaaacagtatgaagtaagccc
cgaatactaatgtatcaactactaacgaacaaaactgGATTTACATGCGg
gatatctaaccaaacgacctttgatagcttgaacggttgacttgattttc
tttatgatgaaccatataaatgaacccatagtctgctgccgggtcagaaa
aatattatttttcaccTATCGTCTACCATTTACCTCAAACCCGGGGTAAC
TAGGTTTGCGATATGATTGGTCTGTCCCAgccaaaaatctaaatcaaaTG
TTTTATCCTATTCGTTAAAATCATTCCCTTGCAAATTCAATTTAAGAGCG
TCAGCTGCGTATAACGTTTATTCCAAATACTAACGAATTTCAATGATTGT
TATTATAGGGTGGAAGCCGTACAGATTTATTGCACACTATcagacatttt
aatgtaaaagCGATATTTTTAGATGAGTTCGACTTAAGAATGGGAGACGA
AACAGTCGATAAAATATCGGAACTTTGTGAAATGATATGGATAGTCCCAT
CAACGGAATCTATGTATTTTAATGACAATTTCAATGGCTTTAAGGAGCAA
TTTACAACTTTAAACCTTTCGCACAATTTTAGAAATTGTCGAAGTATCGT
GGAATCGACAAAGATGGTTGCAGATGAAACAGACTACCTTTATAAAGAAG
GTATAGTGACGCCTCTACCCAATTTCCCCTCTGGTCGAGCACCGTTGTTT
GTTAGGACACTGCGAGACGCAGTATGTGAGTCACGGAAGATAACCGATGA
AGGGATCTTGGTAATAAAAAACGATTTCAATGGGAATGATATGGTAATGC
TGGATGAGATGAAAGAAAAATGGAGGATTTACAGTTTTGATCGAAATGAT
TTTCGGCATAACGAAAACCCATACACATATCTCCAGGATGGACATATGTT
AATAATTAATGGTTTTCTGGCTATAGGCTTTGAGTGGCCAGTGGTGATCG
TGTTTGGAGATATGAGTAATGATGTAACTTATCATGAATGCAATTATATG
ATGAGGTGTTCCACTAGCCTTATTATTGTAAGATGTCAGTAAGCTGTCCC
AGTGTCGTCCATGACAAATGTGAATTATAAATTTAAAACATGTAcgcgct
tttttttataagaatagtgtactttggatgagggtcaagttttcttaaga
aattgccaaaattgaggatgaaatattcttaacgtatttttactttttca
gacttgacttttttacaaacatgagaaatgattaatttgagagttttgga
cttttgagtgaacatttgggttaaaattacatttcttcctcaaagcttca
atttatctctaacaaagtaagcagttttttctgttaaccaaatacaaaat
aactGTATACTTGTCAAGTTCTgtgagggtattcttagggtattcttacg
atttggccaattttcaccctgatattcttatagaagatattcttataaaa
aaaacgtgttatCCGAGAGAATTaggttttttgactttaaaaaagcaACG
TGGCTGAAATCTggaattaacatctttttaagcTTACGGTCTGAGAATTA
AATTTCCGTCCAAACAGTATATAATACTTTGAGGTTTGTGACCGAcaaaa
aattaccaaattttgatgacgtcatttgttaACTTCCATAAACTTTATTG
ctttcatttttcagaaaaatttattcaGAGTTAAATTTCCGTTCCAATAC
TTGATAGTTTGgatacttttaaaaaattttcatgacgtcagcAATCAGGT
GGTTTTTAGGCGTGTCCCCGTCAATTCTTTTTCAGAATATCATCAGGGAT
GTCTGTACTAAGTTTCATACTTTTTTAACCCTATGCAGTATTGTTATGCT
TAGCTACCTGGCTAAGAGGTACCTTTTGGGTTCTAGAACCAGAAATTACC
CGTTAAAAGTTGTTtaactatatttttttttttatgatgacgtcattttt
agtactaaaagaatatttaagtAAATATATTATACCTATTTTGTGTAAGC
AATTTAATCAGTATTGTATAAATAATAGTATTTGGggctccaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067149-exon-scaffold_464-1491911889:222412..224006 | TCONS_00067149-exon-scaffold_464-1491911889:222412..224006 | Clytia hemisphaerica | exon |
| TCONS_00067149-exon-scaffold_464-1510915933:222412..224006 | TCONS_00067149-exon-scaffold_464-1510915933:222412..224006 | Clytia hemisphaerica | exon |
| TCONS_00067149-exon-scaffold_464-1575043694:222412..224006 | TCONS_00067149-exon-scaffold_464-1575043694:222412..224006 | Clytia hemisphaerica | exon |
| TCONS_00067149-exon-scaffold_464-1491911889:228894..230359 | TCONS_00067149-exon-scaffold_464-1491911889:228894..230359 | Clytia hemisphaerica | exon |
| TCONS_00067149-exon-scaffold_464-1510915933:228894..230359 | TCONS_00067149-exon-scaffold_464-1510915933:228894..230359 | Clytia hemisphaerica | exon |
| TCONS_00067149-exon-scaffold_464-1575043694:228894..230359 | TCONS_00067149-exon-scaffold_464-1575043694:228894..230359 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_464 | supercontig | scaffold_464:222412..230359 + |
Blast
The following BLAST results are available for this feature:
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