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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067147 ID=TCONS_00067147|Name=TCONS_00067147|organism=Clytia hemisphaerica|type=transcript|length=1902bp
AATAAAggcattaaaaaaatttttgtggatAAAGGAATTCGTGAGGATGG
GAAAAAACCTATTGACGTAATCAGAGAACGAAAAACCAAAGGAGCGTTCC
TCGACGAGTATCATTTACAAAACAATGACCCGTTTTTGAAGGAACTTTCA
GCTCTCGTAGATTTCTTATGGGTGGTTCCTTCTACCAATTCACTACGCGT
TTTTCATCatgaatttccaaattttgaaaaagaatacaCCGTGCTTCGTC
TCGAAACCAACTTTCGAAACACTAAGAAAATGGTTGTAGACATAAAAAAG
AGAGCTTTGGAAAACGATTATGGATACAAAGAAGGAATAGTGATGCCACT
TGAAAATTCCCCTGATGGTCGTGAACCAACAGTTGTCAAAACATTCAAGG
ATGCAATgcaaaaagcaaagaaaagcaATCAAGAAGGAACGTGGGGCTCG
ATTTTAGTAATTGCAAAACCTTCTTACAACTTATCAGATGACTTACATGG
TTTCAAATGGAAATGGTACAGTACAGATGaaaggaaaaatgatttttcaa
aaaataaatctaccGACGATTCCGGTGACAATCCTTACACGTTTCTTCTC
AAAAATGAAGCTGTTTTGGTTATCGACGAGCCTTTGTCTCTTGGCTTTGA
ATGGCCGACTGTAATTGTATTTGAGAGTATGGAAGCTAATGTTGTTTACC
ATGATATAAACTATTTTATGAGATGCCAAACACATCTTATAATTGTGGAG
AAACCGAAGAAAGCAGATTCTTAGTTTGATTTTATACATAATAATTACAT
ATTAATTACATATTAATTAGATTAAATAGCCTCATACTGATTAGGAAGTC
CTGGGAAGgatagcccggggtccacttaaagcttttttatagactggatg
gcgcgattaagtggcccggtagtatatggtaatatgcttttgcttaggtg
gactgtaaaacagtccgccagatttcgttgtttttgccaggtaaaaaaag
aatgaagctatgtctttatttgaaaataagggaatcaaattctgttattg
atgtttgtttctcgttcttaattatatttttcaaattcaagtagcttttt
ttatatttggattttaaacattcttttttcaaaatggcagccTCGTCAAA
TgcttctagtctacttcactggacaaATTATCAAAaggcaaagttcagcc
agaagtagactctagtctatggGAAGGACAAAACACGTGTCAGCGGGTAG
ATGTATTACGCTCAGAACTTCCGTTCATTGAGCACTTTATAGACTCTGTT
GAGGAGCAAGCTCTGCTTCTCCGttcaccacaagcgattatgtGACGCTC
AACACTTAGTGTTTTAAGCACTCTGCTCTGATGACAACAGCAATTTGTGC
TCGCTTACCCGAGCCGCACTGATGAGTCCTGGGGAGGACGAAACATGTGT
CTGCGGATAGATACATATaaattaagttttatttttatctgtCATTAAGA
CTACTTTTTGGCTCTGGACGTTAAATATAGGCGGGTGGTATCAATCTTCT
GCGCTTttagtttaaaacattttaacgGACGTAAATCGACGTTACACGCA
AAATTGCTCGAACGAAACATCGGTAAATAACTGACGATAAGTTACTAGTT
TGAGgtggtttttttttctaaatatacTTCACAAATTTTcgtgtaatatt
ttttgtgaCGAAAGTTATCTAGGGTTATTTATAAAACATTAGGATGCTAA
ATCGAACAAAACAGAGCTTGAATATGATTGCTGCACATTCATTCTACTTA
GCATAAAATGTAATTCGCTTATTTTACGAAATGATATGTTTTCAGTGTAC
AAACCTCGAATCCAAATGCAATTCTTAGCCGAATCAACTTTTCTTATCAG
AC Run BLAST on NCBI transcript from alignment at scaffold_464:219809..221954+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067147 ID=TCONS_00067147|Name=TCONS_00067147|organism=Clytia hemisphaerica|type=transcript|length=2146bp|location=Sequence derived from alignment at scaffold_464:219809..221954+ (Clytia hemisphaerica)
AATAAAggcattaaaaaaatttttgtggatAAAGGAATTCGTGAGGTCTG
TCGCTGAGGTTCACAAAATGCACTGCTTGGaactcttttttaaattttct
actttttacaTGAGCTTTACTGGGGGACAATTGGCAATTTACAATACAGT
TAAAAATCACTAaaatggtattcttaggttcTCTTGCCTAATCCATCATG
GTGCTATTTCaagcatattcttatttttttgaccaatttcatcatgaata
ttcttataaaaaagcatgtacCTTTTTGTTATTACTCAGGATGGGAAAAA
ACCTATTGACGTAATCAGAGAACGAAAAACCAAAGGAGCGTTCCTCGACG
AGTATCATTTACAAAACAATGACCCGTTTTTGAAGGAACTTTCAGCTCTC
GTAGATTTCTTATGGGTGGTTCCTTCTACCAATTCACTACGCGTTTTTCA
TCatgaatttccaaattttgaaaaagaatacaCCGTGCTTCGTCTCGAAA
CCAACTTTCGAAACACTAAGAAAATGGTTGTAGACATAAAAAAGAGAGCT
TTGGAAAACGATTATGGATACAAAGAAGGAATAGTGATGCCACTTGAAAA
TTCCCCTGATGGTCGTGAACCAACAGTTGTCAAAACATTCAAGGATGCAA
TgcaaaaagcaaagaaaagcaATCAAGAAGGAACGTGGGGCTCGATTTTA
GTAATTGCAAAACCTTCTTACAACTTATCAGATGACTTACATGGTTTCAA
ATGGAAATGGTACAGTACAGATGaaaggaaaaatgatttttcaaaaaata
aatctaccGACGATTCCGGTGACAATCCTTACACGTTTCTTCTCAAAAAT
GAAGCTGTTTTGGTTATCGACGAGCCTTTGTCTCTTGGCTTTGAATGGCC
GACTGTAATTGTATTTGAGAGTATGGAAGCTAATGTTGTTTACCATGATA
TAAACTATTTTATGAGATGCCAAACACATCTTATAATTGTGGAGAAACCG
AAGAAAGCAGATTCTTAGTTTGATTTTATACATAATAATTACATATTAAT
TACATATTAATTAGATTAAATAGCCTCATACTGATTAGGAAGTCCTGGGA
AGgatagcccggggtccacttaaagcttttttatagactggatggcgcga
ttaagtggcccggtagtatatggtaatatgcttttgcttaggtggactgt
aaaacagtccgccagatttcgttgtttttgccaggtaaaaaaagaatgaa
gctatgtctttatttgaaaataagggaatcaaattctgttattgatgttt
gtttctcgttcttaattatatttttcaaattcaagtagctttttttatat
ttggattttaaacattcttttttcaaaatggcagccTCGTCAAATgcttc
tagtctacttcactggacaaATTATCAAAaggcaaagttcagccagaagt
agactctagtctatggGAAGGACAAAACACGTGTCAGCGGGTAGATGTAT
TACGCTCAGAACTTCCGTTCATTGAGCACTTTATAGACTCTGTTGAGGAG
CAAGCTCTGCTTCTCCGttcaccacaagcgattatgtGACGCTCAACACT
TAGTGTTTTAAGCACTCTGCTCTGATGACAACAGCAATTTGTGCTCGCTT
ACCCGAGCCGCACTGATGAGTCCTGGGGAGGACGAAACATGTGTCTGCGG
ATAGATACATATaaattaagttttatttttatctgtCATTAAGACTACTT
TTTGGCTCTGGACGTTAAATATAGGCGGGTGGTATCAATCTTCTGCGCTT
ttagtttaaaacattttaacgGACGTAAATCGACGTTACACGCAAAATTG
CTCGAACGAAACATCGGTAAATAACTGACGATAAGTTACTAGTTTGAGgt
ggtttttttttctaaatatacTTCACAAATTTTcgtgtaatattttttgt
gaCGAAAGTTATCTAGGGTTATTTATAAAACATTAGGATGCTAAATCGAA
CAAAACAGAGCTTGAATATGATTGCTGCACATTCATTCTACTTAGCATAA
AATGTAATTCGCTTATTTTACGAAATGATATGTTTTCAGTGTACAAACCT
CGAATCCAAATGCAATTCTTAGCCGAATCAACTTTTCTTATCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067147-exon-scaffold_464-1491911889:219809..219853 | TCONS_00067147-exon-scaffold_464-1491911889:219809..219853 | Clytia hemisphaerica | exon |
| TCONS_00067147-exon-scaffold_464-1510915933:219809..219853 | TCONS_00067147-exon-scaffold_464-1510915933:219809..219853 | Clytia hemisphaerica | exon |
| TCONS_00067147-exon-scaffold_464-1575043694:219809..219853 | TCONS_00067147-exon-scaffold_464-1575043694:219809..219853 | Clytia hemisphaerica | exon |
| TCONS_00067147-exon-scaffold_464-1491911889:220098..221954 | TCONS_00067147-exon-scaffold_464-1491911889:220098..221954 | Clytia hemisphaerica | exon |
| TCONS_00067147-exon-scaffold_464-1510915933:220098..221954 | TCONS_00067147-exon-scaffold_464-1510915933:220098..221954 | Clytia hemisphaerica | exon |
| TCONS_00067147-exon-scaffold_464-1575043694:220098..221954 | TCONS_00067147-exon-scaffold_464-1575043694:220098..221954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_464 | supercontig | scaffold_464:219809..221954 + |
Blast
The following BLAST results are available for this feature:
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