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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067143 ID=TCONS_00067143|Name=TCONS_00067143|organism=Clytia hemisphaerica|type=transcript|length=2913bp
ATTGATATTATCGtatattaaattattttctacaaaaatacaaCTACTGG
TCGTTTTTATGAGTAACAATTGTTCATGAGAGTTAGAAATTTATTAAAGT
TTGCAAAGTAATGATTTGATTTGGGCAAAAAACAAGATGTCTAAAACACC
TGGTAAAGCAAGAAACTACAACTACTCAAGgaacaccAGTATGCTTGCTA
AATCAGCATCCACTACTAAGCTTTCAGCATGCTTCATTTGTGGTCAAGAA
ATCCCTCTCTCGGAACTCACAACACACGAAAAAGCATGCTTAGACACCAT
CAAGGCTAATGATACACAATACACGAGACAATCTGGGGACGACGGTTCAT
CAGATCACTCCTTCCCGACGGCTTATTCTAATCTCTCAACCCATTCTTCT
TCGAGTGGCGATTCTGCCGGTACCGAAAAGAAGTATTCGCAATGCTATAT
TTGTGGAACGGATGTCCCAAGTTATTTAGCCTCTATTCACGAGAAGAATT
GCAAAAAGAGCTGGGAAACAGGGCTACTAAATTCGATTTGTACACCAGCT
CGAAAGAGTAAGTCAAAAACTGATGTTTCAACGCTTTCAAGAAGCTCAAG
CCGTGATAACATTTTACAAAAGCAAAATGACTTTTCCTTATCAACGCCAA
ATCTCACGAAAGCCAAATCTACTACCAACTTACAGAATGCCAAAATGACG
CCGACAAAAAGCGACAAACCACGTCATTTACGATCAAACGGACGTAAAAG
TACGTCACCTATGTCTCGGTCAACGACAAATTTATCGACGAAAACGACTT
CTAAAGATTCGTTACTCTCATCTACCGAAAACCTTTCGAAGTCATCTCAA
GATGTTCGGGATGTTACCGATGCACCGAAACGCCGGAACACCGGAGATCC
GCAATACGTCATTTGTCAAATCTGCGGAAAACTGTATAGTAAGCATTCGA
TCAGTATACATCAGAGGAGTTGCGAAAAAACGTATCAAAAGCAAAAGAGC
GTGGGTACAAATGTAGACTATAAAGTCAAAAGTCGTTCACTTGTTGATCT
AACAAAAACCAATAGCCGGCGAACACCAATCCCGACTTCAAAACCGAAAT
CGGAAAGGAGACCTGCGTCGGCTAATCcgataaataaaatcaaaacgaAC
TCTTTATCTAGGAGTACGGGAAACTTAGCTCCAACTTCAACATATAGACG
CCGATTATTAACATCCAATAAAAAGACAGTCGTAAATGGTGAAACAACAA
ATGAGTCATCAATGGCAAGCCCAATAAGTAAAAGTGAAATTGACATATCA
ACTACGTCGCCCGGATTACGTAAATGTTATTTATGTCGTCAGTTATACGG
TACACGCTCGTTACCCATTCACGAAAAACAGTGTCTCAAAAAATGGGAGC
TAGCACAAGAAGAAGAGCACAAGCAACGGAAATCGAACGCGCGGGCGGCC
AAACAACAAGACATACAAGTATCATCATTCGGACGAACAAAATTCGAAGA
GGAAAATGGGTTAAATTCGAAAACTGAGTCGGATCAAGAAGAGGATTACG
ATTTAGAATCAACCACTATTCAAAAGCCGATCATATCTCCATCAAAGATG
TTTGGTGTCCCCTCGCCATTAAAGAAAGGCTTCATTGGCCCCGATACTGA
TGACTCGTTAGACGAGACCGATGGTAAGGCCAGTACCCTTGATACTGATA
AGGACAATGGGAAAGTTTTAACGAACGGAGAATCAGGACCTGAAAGACGT
AAATCTGGGAGCGGACCTAAATTCGTTGTCTGTATTTATTGTTCAAAACA
ATTTGGTCAACACTCAATCTCTATTCATGAGAAAAGTTGCCGAGAGAAAA
TGAAAgtcgaaacaaaaacaaaagaaagaatggCCACacaatctaaaata
aaaaataataaaaaactcaGCCAAAGTGTTGGTGATATGACACTTTCTGA
CGCTTTTGATGTGACCACGAATGATATGTTACAATTGGTGAAATGTAATN
TGACGCTTTTGGTGTGACCACGAATGATATGTTACAATTGGTGAAATGTA
ATGAATGtttaaggaaatttttgaaatcagaCATCGAGAAACATAAAATA
CATTGCCGTGTATCTGTACTTTAAAACTTACAGCGCGTCCGGAAGAAAAG
AGGACAGAATTTATATAACGTGGAATCCTCAtaatttatataataatatc
atGACTTTATTATTCAATTTCTTTCCCATCAAAACCTATTAAAACTATAT
TGGAAATTGAGTATAATGTTGCCCGTGTGCATTAGGTTTAGACATTCTAG
GGCGAAATTATTTTGCcgtatttttgacaaaatctaCTGGATACCAAACT
TTCTTATTTCTGCTTTTCTAATTTTATAGGATCATTTCGAAATACTAGAA
AGTTATTCTTTTGGttagaagtttttttcaataaataatAACCGGGCGAA
GCAATTCGTTTTTCGCGTAGTCCATATTTTGTTGTACAGTTAGCTCCTGC
TAGTTTGGAATCtgatttgttcgaattaaaagataaattcgaattataga
gagtattttacgAGGATTTCCCTTAAAGGGGaattatttgttcgaattat
agaaagtttcgaattatggaagttcgaattagggagGGTCCACTCTATTT
GTTTTTTACCTGGACAGTATTTTGGTTGTGTTTGTTTTccaattttaggg
aaaatttgACACTCCTTGTTGTGAAAGGATAATATTGACATagattttgt
ttacaaaaatcatTAAGAATTATTATTAGCAATTAATTGTTATTTTACTG
TTTATTTATTGgtatttcattcaaattttacaaattggtAGATTATAGTT
TCGTTTTGTAATGTGTTTTTGGAAGAAAATAAACGATATCTTTCTctaaa
taaagaacttttt Run BLAST on NCBI transcript from alignment at scaffold_464:194884..202512+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067143 ID=TCONS_00067143|Name=TCONS_00067143|organism=Clytia hemisphaerica|type=transcript|length=7629bp|location=Sequence derived from alignment at scaffold_464:194884..202512+ (Clytia hemisphaerica)
ATTGATATTATCGtatattaaattattttctacaaaaatacaaCTACTGG
TCGTTTTTATGAGTAACAATTGTTCATGAGAGTTAGAAATTTATTAAAGT
TTGCAAAGTAATGATTTGATTTGGGCAAAAAACAAGATGTCTAAAACACC
TGGTAAAGCAAGAAACTACAACTACTCAAGGTACGTTTTATGGTGGTCTC
GGTgcagcccagctggcacacaacgttgttcaacgttcatctgacgttat
aatggacgttatgaacgttagataaacgttgaaaaaacattgtgtgccag
ctgggagtggagtctctataattcgagactctataactcgaatatctcct
tTACTTGAACAAGGTTTCTCTGTCGCCCAGTCAAtgatagcgagtttatg
tattttcacttttgaggacggtaaagtgactgaagcgatNaaattcaaaa
gttagtctctgaaagggtcccaaaatcacgaaaatcaaaaatttctctct
caaaaggtcacgatttccaaaaattttgatcaaaatttggtgaaaatcaa
accaaaatttggaaaaaatggaccaaaatttaggaaaaagtctctcaaag
ggtctcaaaataaccaaaattttgtctctcaaagggttgattttcgattt
tcggctcggacatacccgtcacctcgcaaacctagtaccccccggggtct
cggtacagtggagtctccataactcgagacTCTATACCTCGAATATCTCC
TTTacttgaacaagttttctcTGTCATCCAGTTAACGATGTCTcttaaac
cttactccataacttgaaatttacttaactcgaacaagtttgcgCTTCCC
GTTCTTGCTATAGTTATGGAGTTTGTTGGGATACAGCGTGTTCAGAAAAA
GCGAACCAGACTTTGTATAACAAAAATTCCTTCAATTTTACGACGTTTTA
CGCAGAATCCTCTTTTGAATTACTTTTGGATCTTTGTGAGAAAATGATTC
ttacttacacgttttttataagaacatccaaaacttttgagtttttagcc
TCGAAGAGTttttaaagtgtttttcttacattttataAGTATTTTTCTTT
GGGTGATTTCCTAATAAAACACGCGTTTAGAGTCCATAAAAATATTGTTC
TTAGcttgctcttaatattttggccatcattGAAGACTTGTTATTttaac
aaattaaatttttgaattaaagTTGACCTCAACATTTCAAAGCTTGCATC
TTGgtccaaatttctaaaaattcgaAAACTCAAGCAAGTTTGGTTAGTCA
ATTTGgggtactttaggcgtacaaattttcgcgagcagaaacttttgcga
ggtcgaaaaatcacGAAATGTTTGACATTTACTTTCGTGAATTTgaggga
aaaatgtttttcgcgagcataaactttcgcgaattgcccttttaagaatt
ttcaaagacatttactttcgcgaaaagggccgaaattcgcgaaaagggcc
aaaattcgcgaaaatcgcgaaagtttctgctcgcgaaagtttgtacgcct
aaagtatatcTAGTTTGATTCACAAACTTTTACTTTCTATCTATATAGGG
GAACCTCTTCATTAGAGAATGAGAAGAAGAAGCCTAGAAACCCTCTTTTA
AACAACTCCGAATTTTATTCTTTGGAGTAGCACGAAGTTGTAAATCAATT
AGGGATAGTAGTATGGCTGGCGAGTATGAATCACAGTGTTGTTATTCAAT
GAGAATGGACCTTCAGGGGTATACTGACTGTACATGGtccccactgggac
cccttcctaCTGGAATAATTGGCCAGAATTTTGTCCCCTGTGGAaaatta
ttctcaaatttttgtccccactgaaaataatcaaataaaccaatcctcac
tgcaaaatattatactATTTTACCCATTCCAACTAAATTTTcttacttga
aaacaaaagaattgaaatctgcAGTAATAAAAAgtatgagaatatcaatc
cccatggAATTTCAGTCCGTCATTTCATGGATTGAGTTTTGTCTAGTACA
AATGGAACAGGGGAGTGGATTAATGACATTATAATAGTATGACCTAATGA
CGCTgacctaattttttttcgaggGAGGTCTTTTTCAAAAGACTGGAGGA
TTCAGAACTTATATTCTACGATTACTAGCGCTCGTAGAAAGAGATTTGTC
GGGTAGCGACAAGCCGCCAGGTCATTTTGCaacaaattttctttatatGT
TTATGTTCGGCAAAcaataaaagcaaaaaatgaaAGCTTTGCAAACAAGA
TCTTTAAAATGTCATGGACACAAGCACAACCCTTATAAGTCGTTTCAAAG
ATGTTTCACAAACGTCACTATAACCACTGCGGTGAAGAGTAATTTATAAT
GATTAGCAGACCAAATATGTACACAAAACGCTCCTCCCCTTTTGTGGTTT
TAACTAAAAACGTAAACGATAAGATTCATAATGACGTCATGACTATCCTC
TCTAAGATATTGGTTATAGATTCTTAATGTCTATCTAAACAAGACAGATT
TGTAGCTTAATTTGGTGACACCATTATAAGTGCAAACGTCAATAGTCAAT
AAAACTGAATGTACTTAAAATGAGGAAAATGCTTGTCTATATAAACATCA
CGTACAACAGTCAGTAGTATTACATTTTGATTAAGACATTTACTTGACTG
GTCTATCACTATATAAATCGCAGGATCGCAgatgaaattttacatttttg
ggCAGACAatattattgattttttgaGTTCACTTGAATAATACAAGGCTT
TTCTAAAGGTGTGATCCAATTAGCCTCTGGCCGTTACAAGTCAAAAACAC
ATTGGTGGTTTGATAGTAAATTTTGACAAGATTATTTCGTTTCATTGGAT
TGTCAAAGTGAGATCAGCAGATCACTATGGATACTTCGACGCCATTTATG
ATTGAAACATATCTGGAATCGTTCAGGTATATTGAAGATCTTAGTATGTA
ATTCTGAGCAGAAAGAATAAATAAACACCAGATGTTATCTCCATTGCAGA
GAatgtaaaggcgggaaaatacaTATGCAATAGTTTACAGCCGTAATGGC
AGTATACAAAAAAACGGCGGTAGAGTTTCAATGAAACGAGACTGAGAATG
CGAAAGACTGGCAAACTAtaccggctgtaaactcttttcggcaagaAAAC
TTGATTGGGAATTTTCtccggctttgggcttttttcttagataaaaACAC
TTTGTCCTAGGCTATAGCAAAGCCTAGTTAATTCGTAAGGATAATTTTGG
AAACATACCTTATTTAAACAgtatttctgaaaaatattttgaaagcttTC
ACAAAGAATTCACGAATTCCCAAAGGGTGAAATCAACAATGGTATTCTGG
TTTTCGAGATGAGCCCCTGGTTCAttataagttaagaaaattttcggtat
ttcggaatatTACCAGAATGTTAACTACAGTTTTCTGTTATCTTTTAATA
TCCAGTCTTGCTTGATTAATCCGGTATTGCTTGAATCCTATTGGTGCTGG
TAATCCAATATGTtgtgaatacacgttttttttataagaatatccaaaat
ttttgaagcctttcgatgttcttaactttttgagtttcaagacTGAAAAT
ATCCTTTACATAtccttattttcaccattttgtgagtaatcTTCTCTACT
TCAttaagaaatttggtgttttagagcccacaaagccttaaaatgttctt
aacttgttcttgttcttattttggctatcgaagccttatattacttatat
agtttgttcttataaaaatgtgtatgaAATTAATACTGGTCTCCCTGTGC
ACCCTCCCAACGCCCTCCCTTCTCCATACTTATAATATGCTAACAAATAC
AAGAAATTATGTTATGAAGCTGAGATGACTTTTTTTTGGGGAAAAGCAAT
TGATAAAGACAGTGAAATCAAatatttattcttttttataggaacaccAG
TATGCTTGCTAAATCAGCATCCACTACTAAGCTTTCAGCATGCTTCATTT
GTGGTCAAGAAATCCCTCTCTCGGAACTCACAACACACGAAAAAGCATGC
TTAGACACCATCAAGGCTAATGATACACAATACACGAGACAATCTGGGGA
CGACGGTTCATCAGATCACTCCTTCCCGACGGCTTATTCTAATCTCTCAA
CCCATTCTTCTTCGAGTGGCGATTCTGCCGGTACCGAAAAGAAGTATTCG
CAATGCTATATTTGTGGAACGGATGTCCCAAGTTATTTAGCCTCTATTCA
CGAGAAGAATTGCAAAAAGAGCTGGGAAACAGGGCTACTAAATTCGATTT
GTACACCAGCTCGAAAGAGTAAGTCAAAAAGTAAGTGAAACTTCTACTCT
ACCTAAGTCGGAAAGTTTTCGAAACATttattggtccagcgcgcagcaga
atggacctttaaaaagcaactgattgaaaagattttgtctttgtcggggc
ctgtgcgcgcaataaattaacaagtccaggNATCAAAAACTGTCAAAACT
TAGCAATataaagaaagtgtcaaagtgtcaaagaataaaAGCTCAGAGTA
GAGGATGGGAAGGAAACTTTTTTGCGTCTtttaaggaacccggtacgaac
gacattcggttattgccacgtcagctggaccttcacgccgctccggcttc
ttgtttatttttgccccgctttaaatgaaaatcttataCAAAGAATTACG
TGTTATAATTCAAATCCTTCAATCATTTGTAAAAAGATCAGTTTTTCCGA
TGTATCGAAgtaacttttgaaaattctgaTGATCATCATTTGACGTGTTG
AAGTAGATCGGTATTCTTTCAGCTGCGGTCTGAGTCAATTTAGGAGCTCC
ACTTGTCACCGCTATTTGCCAGAGAGGCATACGAgcctttggtatgaccc
ggccagCGGCGCACCGTAGCCAGATGTTCTACCTTTATGTTACAAATTGC
TAAGAAATAGATTGGcacagtctgttcctctaaagaacCCTGCATTGTAG
CACGcgtgcgtaatttgtcgttctttaaaccaTATGTAGATAATTCCTGT
GATAAACAAATAAGAAGATTTCGTAGGGGTTGACAAACCAACCGGGTCGG
GGTTGTGGAGGgcgaaatttgtcgtttttaTAAAATGtgttgttcttttt
gtctacttttagtaaatgtaggattctttagataaacccacTCGGCATCA
TAAATTATATCATGTTCCATTCTCTTTGTTTTCAGCTGATGTTTCAACGC
TTTCAAGAAGCTCAAGCCGTGATAACATTTTACAAAAGCAAAATGACTTT
TCCTTATCAACGCCAAATCTCACGAAAGCCAAATCTACTACCAACTTACA
GAATGCCAAAATGACGCCGACAAAAAGCGACAAACCACGTCATTTACGAT
CAAACGGACGTAAAAGTACGTCACCTATGTCTCGGTCAACGACAAATTTA
TCGACGAAAACGACTTCTAAAGATTCGTTACTCTCATCTACCGAAAACCT
TTCGAAGTCATCTCAAGATGTTCGGGATGTTACCGATGCACCGAAACGCC
GGAACACCGGAGATCCGCAATACGTCATTTGTCAAATCTGCGGAAAACTG
TATAGTAAGCATTCGATCAGTATACATCAGAGGAGTTGCGAAAAAACGTA
TCAAAAGCAAAAGAGCGTGGGTACAAATGTAGACTATAAAGTCAAAAGTC
GTTCACTTGTTGATCTAACAAAAACCAATAGCCGGCGAACACCAATCCCG
ACTTCAAAACCGAAATCGGAAAGGAGACCTGCGTCGGCTAATCcgataaa
taaaatcaaaacgaACTCTTTATCTAGGAGTACGGGAAACTTAGCTCCAA
CTTCAACATATAGACGCCGATTATTAACATCCAATAAAAAGACAGTCGTA
AATGGTGAAACAACAAATGAGTCATCAATGGCAAGCCCAATAAGTAAAAG
TGAAATTGACATATCAACTACGTCGCCCGGATTACGTAAATGTTATTTAT
GTCGTCAGTTATACGGTACACGCTCGTTACCCATTCACGAAAAACAGTGT
CTCAAAAAATGGGAGCTAGCACAAGAAGAAGAGCACAAGCAACGGAAATC
GAACGCGCGGGCGGCCAAACAACAAGACATACAAGTATCATCATTCGGAC
GAACAAAATTCGAAGAGGAAAATGGGTTAAATTCGAAAACTGAGTCGGAT
CAAGAAGAGGATTACGATTTAGAATCAACCACTATTCAAAAGCCGATCAT
ATCTCCATCAAAGATGTTTGGTGTCCCCTCGCCATTAAAGAAAGGCTTCA
TTGGCCCCGATACTGATGACTCGTTAGACGAGACCGATGGTAAGGCCAGT
ACCCTTGATACTGATAAGGACAATGGGAAAGTTTTAACGAACGGAGAATC
AGGACCTGAAAGACGTAAATCTGGGAGCGGACCTAAATTCGTTGTCTGTA
TTTATTGTTCAAAACAATTTGGTCAACACTCAATCTCTATTCATGAGAAA
AGTTGCCGAGAGAAAATGAAAgtcgaaacaaaaacaaaagaaagaatggC
CACacaatctaaaataaaaaataataaaaaactcaGCCAAAGTGTTGGTG
ATATGACACTTTCTGACGCTTTTGATGTGACCACGAATGATATGTTACAA
TTGGTGAAATGTAATNTGACGCTTTTGGTGTGACCACGAATGATATGTTA
CAATTGGTGAAATGTAATGAATGtttaaggaaatttttgaaatcagaCAT
CGAGAAACATAAAATACATTGCCGTGTATCTGTACTTTAAAACTTACAGC
GCGTCCGGAAGAAAAGAGGACAGAATTTATATAACGTGGAATCCTCAtaa
tttatataataatatcatGACTTTATTATTCAATTTCTTTCCCATCAAAA
CCTATTAAAACTATATTGGAAATTGAGTATAATGTTGCCCGTGTGCATTA
GGTTTAGACATTCTAGGGCGAAATTATTTTGCcgtatttttgacaaaatc
taCTGGATACCAAACTTTCTTATTTCTGCTTTTCTAATTTTATAGGATCA
TTTCGAAATACTAGAAAGTTATTCTTTTGGttagaagtttttttcaataa
ataatAACCGGGCGAAGCAATTCGTTTTTCGCGTAGTCCATATTTTGTTG
TACAGTTAGCTCCTGCTAGTTTGGAATCtgatttgttcgaattaaaagat
aaattcgaattatagagagtattttacgAGGATTTCCCTTAAAGGGGaat
tatttgttcgaattatagaaagtttcgaattatggaagttcgaattaggg
agGGTCCACTCTATTTGTTTTTTACCTGGACAGTATTTTGGTTGTGTTTG
TTTTccaattttagggaaaatttgACACTCCTTGTTGTGAAAGGATAATA
TTGACATagattttgtttacaaaaatcatTAAGAATTATTATTAGCAATT
AATTGTTATTTTACTGTTTATTTATTGgtatttcattcaaattttacaaa
ttggtAGATTATAGTTTCGTTTTGTAATGTGTTTTTGGAAGAAAATAAAC
GATATCTTTCTctaaataaagaacttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067143-exon-scaffold_464-1491911889:194884..195063 | TCONS_00067143-exon-scaffold_464-1491911889:194884..195063 | Clytia hemisphaerica | exon |
| TCONS_00067143-exon-scaffold_464-1510915933:194884..195063 | TCONS_00067143-exon-scaffold_464-1510915933:194884..195063 | Clytia hemisphaerica | exon |
| TCONS_00067143-exon-scaffold_464-1575043694:194884..195063 | TCONS_00067143-exon-scaffold_464-1575043694:194884..195063 | Clytia hemisphaerica | exon |
| TCONS_00067143-exon-scaffold_464-1491911889:198875..199263 | TCONS_00067143-exon-scaffold_464-1491911889:198875..199263 | Clytia hemisphaerica | exon |
| TCONS_00067143-exon-scaffold_464-1510915933:198875..199263 | TCONS_00067143-exon-scaffold_464-1510915933:198875..199263 | Clytia hemisphaerica | exon |
| TCONS_00067143-exon-scaffold_464-1575043694:198875..199263 | TCONS_00067143-exon-scaffold_464-1575043694:198875..199263 | Clytia hemisphaerica | exon |
| TCONS_00067143-exon-scaffold_464-1491911889:200169..202512 | TCONS_00067143-exon-scaffold_464-1491911889:200169..202512 | Clytia hemisphaerica | exon |
| TCONS_00067143-exon-scaffold_464-1510915933:200169..202512 | TCONS_00067143-exon-scaffold_464-1510915933:200169..202512 | Clytia hemisphaerica | exon |
| TCONS_00067143-exon-scaffold_464-1575043694:200169..202512 | TCONS_00067143-exon-scaffold_464-1575043694:200169..202512 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_464 | supercontig | scaffold_464:194884..202512 + |
Blast
The following BLAST results are available for this feature:
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