TCONS_00067118 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067118
Unique NameTCONS_00067118
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067118 ID=TCONS_00067118|Name=TCONS_00067118|organism=Clytia hemisphaerica|type=transcript|length=456bp
GGAATCTCGCTAGTCCCAGACCTCTAATTACCCAAAATGCTGAAAATTGT
CTTACATCAATACGAAATTGAGGACCACCGCCCAGATTTTACGGAACAAA
CCCCTAATTCCACAGACCAGAACGAAAACGAGAATTTTTTAACATCTTTG
AAGAACGTAGTTTTGATtatcaaaagatgtttttcactttctattaataa
caaaattttagttCATCGGCCATGCCTGATGAACGTATTTTAGTTCATCA
GACATGCCTGATGAACGTATTTTAGTTCATCAGACATGCCTGATGAACGT
ATTTTAGTTCATCAGTCATGCCTGATGAACGTATTTTAGTTCATCGGGCA
TGCCTGATGAACGTATTTTCGTCCATCGGGCATGCCTGACGAATCAGATT
GTGATTTTGATGacctgaaaaaatttgatgcaaTTTTGCTACCAAAAACC
AACCAT
Run BLAST on NCBI

transcript from alignment at scaffold_463:286254..286709

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067118 ID=TCONS_00067118|Name=TCONS_00067118|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at scaffold_463:286254..286709 (Clytia hemisphaerica)
ATGGTTGGTTTTTGGTAGCAAAAttgcatcaaattttttcaggtCATCAA
AATCACAATCTGATTCGTCAGGCATGCCCGATGGACGAAAATACGTTCAT
CAGGCATGCCCGATGAACTAAAATACGTTCATCAGGCATGACTGATGAAC
TAAAATACGTTCATCAGGCATGTCTGATGAACTAAAATACGTTCATCAGG
CATGTCTGATGAACTAAAATACGTTCATCAGGCATGGCCGATGaactaaa
attttgttattaatagaaagtgaaaaacatcttttgataATCAAAACTAC
GTTCTTCAAAGATGTTAAAAAATTCTCGTTTTCGTTCTGGTCTGTGGAAT
TAGGGGTTTGTTCCGTAAAATCTGGGCGGTGGTCCTCAATTTCGTATTGA
TGTAAGACAATTTTCAGCATTTTGGGTAATTAGAGGTCTGGGACTAGCGA
GATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041939XLOC_041939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067118-exon-scaffold_463-1491911889:286254..286709TCONS_00067118-exon-scaffold_463-1491911889:286254..286709Clytia hemisphaericaexon
TCONS_00067118-exon-scaffold_463-1510915933:286254..286709TCONS_00067118-exon-scaffold_463-1510915933:286254..286709Clytia hemisphaericaexon
TCONS_00067118-exon-scaffold_463-1575043694:286254..286709TCONS_00067118-exon-scaffold_463-1575043694:286254..286709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_463supercontigscaffold_463:286254..286709 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.140066	0	0.159108	0.387399	0.153064	0.184665	0.172881	0.605191	0.449776	0.727605	0.478299	1.14632	1.28967	0.570923	0.612688	1.40174	0.442072	1.83224	2.39664	1.94424	1.21928	0.329377	0.449177	0	0	3.34818	3.36307	2.23192	1.13699
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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