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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067115 ID=TCONS_00067115|Name=TCONS_00067115|organism=Clytia hemisphaerica|type=transcript|length=1577bp
TATTCAGTTAGTCTTTTTAGctgtatatttcaaaatttttacaaatatta
CATAATACTCCAGGTTACATAATACTCCAGGCGCTGGGGAAACTTTCGTA
TGCAAATCACTGCGTACAGTTAAAACCTTTTGATTCGTTTTATGTATGGT
ctaaagtttctaaaaggtTTGGTCCCGTTCCCGTGGGCGGTGGCACCAAC
CCTGGGAACGCCCTTTTGGGCGTAGAAAATTGTTCCCTGGGTGGTTTCGC
AAAAAGTgaacatattatataccaatcgacgcgAAATTTTATACTGATTA
AAAAAAAGGTTAACGTTATGGGCAAAAAAATCAAGCCCTCAAAAGTTATT
AACGTTTGAATGTGGAAGGGTAATTTATAGCATTATCTACTCGTATTAGC
CATTTAAACGTCATTAATGACTCAAAAGAGCAGATATTATAGATTAACAc
ctttttcttaacatttttttgtttctatttatttcacGATAATTGAATCA
TTTATTTGAATCATAATTGAACCATtgatcttttttctaaaattttcttt
ttcttaatgAATGGAAATGTTTCCTTACGCTGAAGAGGAATTTGAATTTT
GTGTAGTATTAACTAGTTTTGCAAGAAAGTTGAAGTTGAAGCATCCTCGA
AAGAGTTTTAAACCTTCCAATCCAATGGTACACAAAGTAGCCATCAGTTT
GCTTTTTGGAATACCTTTCTCAGCACCATCTACCCAGCTTTACGTGACCT
TACGCGATCCCATCGAGAAGGAAACTGGAAGAAGATGCATCCTTCCGCTG
TACAACGTGCAATACCACTTGTGTTTGCATTCGACCGCACAAATTATAAA
CGTTGGCTGCCTATCTATTTCGAAGACAGTCTAACTCATTCCACCAAATT
TCCACTAATTCCTGAAGATTTTGTTCAGGGTGGTTTTGTTGCAAAACTAT
CAAACCGGAAAGCCAGAACAGTGCCCATGGATCAAGCGTTGGAATCGCAA
TACAACAAACAAGCCAAAAGTTCATCCAGAATTATTGGTACAACGAGAGG
AAAAGATGCAGTATGTAAATAGGATCTGATGAAGCACGAAAAGTCCAACT
ACTCCAATTTGTTTCGTAAATTTTCCAGGGTTAATGAGGAAGATAAATAT
TTATTACATCACGAGTTCTCCACCAAGAAAAGTGAAACAGGTCAAGAGAG
TATATCTCAAGTCGTTTCATACATCTGCAGTCGTGGCAAAAAAATACTct
tatataatattttaaatACCCTAGTAAAAGCCCTTCGTCTATCATAAcca
atattttaatatttactGCTTTCATTCTGTCTCTGTGGGCGCTGTTTCCT
CATCTGTCTAAATGCTTGAGTTTTTTGAAGAATACCTTCAGGTACGACAT
TATTTATTTGTTATTAAAGGGCGAGGAGGCAGCATACTGCAAATTTGTCA
AAGAACGTTTACAGAAAAAGTTGTAAAGCTATTTGACAAAATTCCAAAGA
CCAGAAAATCCAAGAGAAGAAGTAAGAACTGGGGGTGTCTTGACGTAAAC
AAGGAAACTATTCACTTTCTTCGAATG Run BLAST on NCBI protein sequence of TCONS_00067115-protein >TCONS_00067115-protein ID=TCONS_00067115-protein|Name=TCONS_00067115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MEMFPYAEEEFEFCVVLTSFARKLKLKHPRKSFKPSNPMVHKVAISLLFG
IPFSAPSTQLYVTLRDPIEKETGRRCILPLYNVQYHLCLHSTAQIINVGC
LSISKTV Run BLAST on NCBI transcript from alignment at scaffold_463:261548..263124 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067115 ID=TCONS_00067115|Name=TCONS_00067115|organism=Clytia hemisphaerica|type=transcript|length=1577bp|location=Sequence derived from alignment at scaffold_463:261548..263124 (Clytia hemisphaerica)
CATTCGAAGAAAGTGAATAGTTTCCTTGTTTACGTCAAGACACCCCCAGT
TCTTACTTCTTCTCTTGGATTTTCTGGTCTTTGGAATTTTGTCAAATAGC
TTTACAACTTTTTCTGTAAACGTTCTTTGACAAATTTGCAGTATGCTGCC
TCCTCGCCCTTTAATAACAAATAAATAATGTCGTACCTGAAGGTATTCTT
CAAAAAACTCAAGCATTTAGACAGATGAGGAAACAGCGCCCACAGAGACA
GAATGAAAGCagtaaatattaaaatattggTTATGATAGACGAAGGGCTT
TTACTAGGGTatttaaaatattatataagAGTATTTTTTTGCCACGACTG
CAGATGTATGAAACGACTTGAGATATACTCTCTTGACCTGTTTCACTTTT
CTTGGTGGAGAACTCGTGATGTAATAAATATTTATCTTCCTCATTAACCC
TGGAAAATTTACGAAACAAATTGGAGTAGTTGGACTTTTCGTGCTTCATC
AGATCCTATTTACATACTGCATCTTTTCCTCTCGTTGTACCAATAATTCT
GGATGAACTTTTGGCTTGTTTGTTGTATTGCGATTCCAACGCTTGATCCA
TGGGCACTGTTCTGGCTTTCCGGTTTGATAGTTTTGCAACAAAACCACCC
TGAACAAAATCTTCAGGAATTAGTGGAAATTTGGTGGAATGAGTTAGACT
GTCTTCGAAATAGATAGGCAGCCAACGTTTATAATTTGTGCGGTCGAATG
CAAACACAAGTGGTATTGCACGTTGTACAGCGGAAGGATGCATCTTCTTC
CAGTTTCCTTCTCGATGGGATCGCGTAAGGTCACGTAAAGCTGGGTAGAT
GGTGCTGAGAAAGGTATTCCAAAAAGCAAACTGATGGCTACTTTGTGTAC
CATTGGATTGGAAGGTTTAAAACTCTTTCGAGGATGCTTCAACTTCAACT
TTCTTGCAAAACTAGTTAATACTACACAAAATTCAAATTCCTCTTCAGCG
TAAGGAAACATTTCCATTcattaagaaaaagaaaattttagaaaaaagat
caATGGTTCAATTATGATTCAAATAAATGATTCAATTATCgtgaaataaa
tagaaacaaaaaaatgttaagaaaaaggTGTTAATCTATAATATCTGCTC
TTTTGAGTCATTAATGACGTTTAAATGGCTAATACGAGTAGATAATGCTA
TAAATTACCCTTCCACATTCAAACGTTAATAACTTTTGAGGGCTTGATTT
TTTTGCCCATAACGTTAACCTTTTTTTTAATCAGTATAAAATTTcgcgtc
gattggtatataatatgttcACTTTTTGCGAAACCACCCAGGGAACAATT
TTCTACGCCCAAAAGGGCGTTCCCAGGGTTGGTGCCACCGCCCACGGGAA
CGGGACCAAaccttttagaaactttagACCATACATAAAACGAATCAAAA
GGTTTTAACTGTACGCAGTGATTTGCATACGAAAGTTTCCCCAGCGCCTG
GAGTATTATGTAACCTGGAGTATTATGtaatatttgtaaaaattttgaaa
tatacagCTAAAAAGACTAACTGAATA Coding sequence (CDS) from alignment at scaffold_463:261548..263124 >TCONS_00067115 ID=TCONS_00067115|Name=TCONS_00067115|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_463:261548..263124 (Clytia hemisphaerica)
TTAGACTGTCTTCGAAATAGATAGGCAGCCAACGTTTATAATTTGTGCGG
TCGAATGCAAACACAAGTGGTATTGCACGTTGTACAGCGGAAGGATGCAT
CTTCTTCCAGTTTCCTTCTCGATGGGATCGCGTAAGGTCACGTAAAGCTG
GGTAGATGGTGCTGAGAAAGGTATTCCAAAAAGCAAACTGATGGCTACTT
TGTGTACCATTGGATTGGAAGGTTTAAAACTCTTTCGAGGATGCTTCAAC
TTCAACTTTCTTGCAAAACTAGTTAATACTACACAAAATTCAAATTCCTC
TTCAGCGTAAGGAAACATTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067115-exon-scaffold_463-1491911889:261548..263124 | TCONS_00067115-exon-scaffold_463-1491911889:261548..263124 | Clytia hemisphaerica | exon |
| TCONS_00067115-exon-scaffold_463-1510915933:261548..263124 | TCONS_00067115-exon-scaffold_463-1510915933:261548..263124 | Clytia hemisphaerica | exon |
| TCONS_00067115-exon-scaffold_463-1575043694:261548..263124 | TCONS_00067115-exon-scaffold_463-1575043694:261548..263124 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_463 | supercontig | scaffold_463:261548..263124 . |
Blast
The following BLAST results are available for this feature:
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