TCONS_00067113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067113
Unique NameTCONS_00067113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067113 ID=TCONS_00067113|Name=TCONS_00067113|organism=Clytia hemisphaerica|type=transcript|length=319bp
GCCAAGGACAGAGCCTTGCGGGACACCATGTTCCATGGGTTTTGATCTTG
AGTTTTTACCAGATACTGACACGAATTGTGATCTACCAGATCTACGTATC
ATTGAAGAAGCAGGAGGTTGAGAAATTGAGTCATGGAATATATCCCCATC
AGGAGCATCTTTATGTGTTTGTTCTTGTGTTGATTGAGTGGTGTATTCAG
GAATATCAGCAAGTATTTCCTCCATATCAGCTTGTTGATGCTGTTTTCTT
GTTGTTACAGGCATTTTGGCTCGAGAAACAACGCCTACTTTTTACGCGCC
AAAAATCTTGAAGACACGT
Run BLAST on NCBI

protein sequence of TCONS_00067113-protein

>TCONS_00067113-protein ID=TCONS_00067113-protein|Name=TCONS_00067113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
QGQSLAGHHVPWVLILSFYQILTRIVIYQIYVSLKKQEVEKLSHGIYPHQ
EHLYVFVLVLIEWCIQEYQQVFPPYQLVDAVFLLLQAFWLEKQRLLFTRQ
KS
Run BLAST on NCBI

transcript from alignment at scaffold_463:250464..250782

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067113 ID=TCONS_00067113|Name=TCONS_00067113|organism=Clytia hemisphaerica|type=transcript|length=319bp|location=Sequence derived from alignment at scaffold_463:250464..250782 (Clytia hemisphaerica)
ACGTGTCTTCAAGATTTTTGGCGCGTAAAAAGTAGGCGTTGTTTCTCGAG
CCAAAATGCCTGTAACAACAAGAAAACAGCATCAACAAGCTGATATGGAG
GAAATACTTGCTGATATTCCTGAATACACCACTCAATCAACACAAGAACA
AACACATAAAGATGCTCCTGATGGGGATATATTCCATGACTCAATTTCTC
AACCTCCTGCTTCTTCAATGATACGTAGATCTGGTAGATCACAATTCGTG
TCAGTATCTGGTAAAAACTCAAGATCAAAACCCATGGAACATGGTGTCCC
GCAAGGCTCTGTCCTTGGC

Coding sequence (CDS) from alignment at scaffold_463:250464..250782

>TCONS_00067113 ID=TCONS_00067113|Name=TCONS_00067113|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_463:250464..250782 (Clytia hemisphaerica)
TCAAGATTTTTGGCGCGTAAAAAGTAGGCGTTGTTTCTCGAGCCAAAATG
CCTGTAACAACAAGAAAACAGCATCAACAAGCTGATATGGAGGAAATACT
TGCTGATATTCCTGAATACACCACTCAATCAACACAAGAACAAACACATA
AAGATGCTCCTGATGGGGATATATTCCATGACTCAATTTCTCAACCTCCT
GCTTCTTCAATGATACGTAGATCTGGTAGATCACAATTCGTGTCAGTATC
TGGTAAAAACTCAAGATCAAAACCCATGGAACATGGTGTCCCGCAAGGCT
CTGTCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041934XLOC_041934Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067113-proteinTCONS_00067113-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067113-exon-scaffold_463-1491911889:250464..250782TCONS_00067113-exon-scaffold_463-1491911889:250464..250782Clytia hemisphaericaexon
TCONS_00067113-exon-scaffold_463-1510915933:250464..250782TCONS_00067113-exon-scaffold_463-1510915933:250464..250782Clytia hemisphaericaexon
TCONS_00067113-exon-scaffold_463-1575043694:250464..250782TCONS_00067113-exon-scaffold_463-1575043694:250464..250782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_463supercontigscaffold_463:250464..250782 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.346703	1.77717	1.58067	0.457896	0.3385	0.787428	1.1153	0.63118	0	1.31538	1.4089	0.916527	2.79944	1.30545	0.914293	2.2812	1.70773	1.38077	1.02841	1.99759	0	0	1.85349	0.724536	0.0985754	1.4417	0.80402	0.704501	1.0791	1.83294
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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