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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067090 ID=TCONS_00067090|Name=TCONS_00067090|organism=Clytia hemisphaerica|type=transcript|length=1464bp
CAGTAAttctactttctttttctaaaaaattaaagctaaaaaaacaaaac
aaaacaattagaaaaatgttttaaagaacaaaataaatactgttttaaat
gttttagtTTTTAGGAAGAGACTTTTGTACATTTAATTTGTTACGTTTTA
CATCTTTCATAACCTAACAAATGCATTATAAATACAACAAAGAGACATGA
ATTTCTTGAAACATCTTTGTGTTTTAGActccctttttttaaacaaaaaa
aaacatgccaAGAAAATAGGAATATAAGAAAATATACTAATCAGTTGTGA
CTGTTCAATCTACCTAAAAATACAGTTTCACTTTTAAaagtttgtaattt
ttttatgaagcATAAcgtttttttgcaatattttgaaattgttcCAAAAT
TATGAAAGTTAGAACAGTATGGGGACCGATTCGTAGATAACATGGGGTGA
ATCCTTTCCACAATGCAAAAACTCCCTCGTTGCGAATAACTTTTGTCAAA
ACATCTAGTCCACCTTTGTACTCAGGTTTCCCATCGATATATTTCATGCT
TTGGATTCTGGTCTTCACGATATCTGGTGGAAGTGATGCCCACGTTGTGG
CAAGACCACTCACCATGCTTgcgcaaaaatgacaaaaaacattatcatca
aaatacttCAGAGTCAGCAAATATTGTTTCACTTGAGAATAAGTTGCAAG
TTGAGCAGCATTTACAAAAATGGCCCTTGTAATTGTTGGTAAACATCCTC
TCCAGAGCGTTAAAACTCCTTCCTCCTTCACGACACGGAAAAGAAGCATC
AAATACATTTTTGTAGCCTCTCTGCTCATTTTTAGGAAGTCGACCATCTG
AGGTCATTCTGATCAACGCCAATTCAGCTGGAGTCCCAACAAAAGCTCCA
GTTCCTCCTGCAATCATACCNACGCCAATTCAGCTGGAGTCCCAACAAAA
GCTCCAGTTCCTCCTGCAATCATACCAAAAGCACACTTCTGTAAAAAACT
AACATTCTCTCCTGGTTTTTTGAATGAATCCATCAAAGTTGTGTAAATTC
CTAACCGTGTTGTTGTGTATGTTGCTTGTCTTAATAAACCGGCTGAGAGT
CCATTATAAAGTGAAATAGGTCCTTCACTCCTAGCAATATTGATAAGAGC
ATGGAATGCAGTCTTGTGTTCTCTTGCACCTCCACCAATTCCACTCATCT
GCATTCTTGTTTTGACCAAGTCAAGCGGTTGAACAACGCAGGTAGCTGCC
ATTCCAGCACCTCCTCCCATCATGAATCGAACATATTTTGGAATCTCTAt
gttgtttgacattttgaaatcaACCAAACAACTTGTGCTTCTATTAACTT
GAATTAAATAACTTGAACTTGGCACTTGGGACAGGCCGACAGGACAAAAC
AGGCAGGAACTGAGCACTTtccaatttccgtgtttacatTTTTGCCTCAC
CTTCCCGtttaaaa Run BLAST on NCBI transcript from alignment at scaffold_463:325111..326714+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067090 ID=TCONS_00067090|Name=TCONS_00067090|organism=Clytia hemisphaerica|type=transcript|length=1604bp|location=Sequence derived from alignment at scaffold_463:325111..326714+ (Clytia hemisphaerica)
CAGTAAttctactttctttttctaaaaaattaaagctaaaaaaacaaaac
aaaacaattagaaaaatgttttaaagaacaaaataaatactgttttaaat
gttttagtTTTTAGGAAGAGACTTTTGTACATTTAATTTGTTACGTTTTA
CATCTTTCATAACCTAACAAATGCATTATAAATACAACAAAGAGACATGA
ATTTCTTGAAACATCTTTGTGTTTTAGActccctttttttaaacaaaaaa
aaacatgccaAGAAAATAGGAATATAAGAAAATATACTAATCAGTTGTGA
CTGTTCAATCTACCTAAAAATACAGTTTCACTTTTAAaagtttgtaattt
ttttatgaagcATAAcgtttttttgcaatattttgaaattgttcCAAAAT
TATGAAAGTTAGAACAGTATGGGGACCGATTCGTAGATAACATGGGGTGA
ATCCTTTCCACAATGCAAAAACTCCCTCGTTGCGAATAACTTTTGTCAAA
ACATCTAGTCCACCTTTGTACTCAGGTTTCCCATCGATATATTTCATGCT
TTGGATTCTGGTCTTCACGATATCTGGTGGAAGTGATGCCCACGTTGTGG
CAAGACCACTCACCATGCTTgcgcaaaaatgacaaaaaacattatcatca
aaatacttCAGAGTCAGCAAATATTGTTTCACTTGAGAATAAGTTGCAAG
TTGAGCAGCATTTACAAAAATGGCCCTTGTAATTGTTGGTAAACATCCTC
TCCAGAGCGTTAAAACTCCTTCCTCCTTCACGACACGGAAAAGAGCATCA
AATACATTTTTGTAGCCTCTCTGCTCATTTTTAGGAAGTCGACCATCTGA
GGTCATTCTGATCAACGCCAATTCAGCTGGAGTCCCAACAAAAGCTCCAG
NAAAAACTCCTTCTTCCTTCACGACACGGAAAAGAGCATCAAATACATTT
TTGTAGCCTCTCTGCTCATTTTTAGGAAGTCGACCATCTGAGGTCATTCT
GATCAACGCCAATTCAGCTGGAGTCCCAACAAAAGCTCCAGTTCCTCCTG
CAATCATACCNACGCCAATTCAGCTGGAGTCCCAACAAAAGCTCCAGTTC
CTCCTGCAATCATACCAAAAGCACACTTCTGTAAAAAACTAACATTCTCT
CCTGGTTTTTTGAATGAATCCATCAAAGTTGTGTAAATTCCTAACCGTGT
TGTTGTGTATGTTGCTTGTCTTAATAAACCGGCTGAGAGTCCATTATAAA
GTGAAATAGGTCCTTCACTCCTAGCAATATTGATAAGAGCATGGAATGCA
GTCTTGTGTTCTCTTGCACCTCCACCAATTCCACTCATCTGCATTCTTGT
TTTGACCAAGTCAAGCGGTTGAACAACGCAGGTAGCTGCCATTCCAGCAC
CTCCTCCCATCATGAATCGAACATATTTTGGAATCTCTAtgttgtttgac
attttgaaatcaACCAAACAACTTGTGCTTCTATTAACTTGAATTAAATA
ACTTGAACTTGGCACTTGGGACAGGCCGACAGGACAAAACAGGCAGGAAC
TGAGCACTTtccaatttccgtgtttacatTTTTGCCTCACCTTCCCGttt
aaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067090-exon-scaffold_463-1491911889:325111..325904 | TCONS_00067090-exon-scaffold_463-1491911889:325111..325904 | Clytia hemisphaerica | exon |
| TCONS_00067090-exon-scaffold_463-1510915933:325111..325904 | TCONS_00067090-exon-scaffold_463-1510915933:325111..325904 | Clytia hemisphaerica | exon |
| TCONS_00067090-exon-scaffold_463-1575043694:325111..325904 | TCONS_00067090-exon-scaffold_463-1575043694:325111..325904 | Clytia hemisphaerica | exon |
| TCONS_00067090-exon-scaffold_463-1491911889:326045..326714 | TCONS_00067090-exon-scaffold_463-1491911889:326045..326714 | Clytia hemisphaerica | exon |
| TCONS_00067090-exon-scaffold_463-1510915933:326045..326714 | TCONS_00067090-exon-scaffold_463-1510915933:326045..326714 | Clytia hemisphaerica | exon |
| TCONS_00067090-exon-scaffold_463-1575043694:326045..326714 | TCONS_00067090-exon-scaffold_463-1575043694:326045..326714 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_463 | supercontig | scaffold_463:325111..326714 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018108 | Mitochondrial_sb/sol_carrier |
| IPR023395 | Mt_carrier_dom |
Blast
BLAST of TCONS_00067090 vs. Swiss-Prot (Human)
Match: M2OM (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens GN=SLC25A11 PE=1 SV=3) HSP 1 Score: 300.056 bits (767), Expect = 2.331e-97 Identity = 181/313 (57.83%), Postives = 212/313 (67.73%), Query Frame = -3
Query: 356 PKYVRFXXXXXXXXXATCVVQPLDLVKTRMQMSGIGGGAREHKTAFHALINIARSEGPISLYNGLSAGLLRQAXXXXXXXXXXXXLMDSFKKP-GENVSFLQKCAFGMIAGGTGAFVGTPXXXXXXXXXXXXXXXXXXXLNWR*SE*PQMVDFLKMSREATKMYLMLLFRVVKEEGVLTLWRGCLPTITRAIFVNAAQLATYSQVKQYLLTLKYFDDNVFCHFCASMVSGLATTWASLPPDIVKTRIQSMKYIDGKPEYKGGLDVLTKVIRNEGVFALWKGFTPCYLRIGPHTVLTFIILEQFQNIAKKRYAS 1291
PK V+F+ GG AGM AT VQPLDLVK RMQ+SG G RE+KT+FHAL +I ++EG +Y GLSAGLLRQATYTTTRLGIYT L + G FL K GM AG TGAFVGTPAE+A + + + L R K L R+ +EEGVLTLWRGC+PT+ RA+ VNAAQLA+YSQ KQ+LL YF DN+ CHFCASM+SGL TT AS+P DI KTRIQ+M+ IDGKPEYK GLDVL KV+R EG F+LWKGFTP Y R+GPHTVLTFI LEQ K+ + S
Sbjct: 20 PKSVKFLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTSFHALTSILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPAD-------------------QRRGYKNVFNALIRITREEGVLTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIAKTRIQNMRMIDGKPEYKNGLDVLFKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNKAYKRLFLS 313
The following BLAST results are available for this feature:
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