TCONS_00067090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067090
Unique NameTCONS_00067090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067090 ID=TCONS_00067090|Name=TCONS_00067090|organism=Clytia hemisphaerica|type=transcript|length=1464bp
CAGTAAttctactttctttttctaaaaaattaaagctaaaaaaacaaaac
aaaacaattagaaaaatgttttaaagaacaaaataaatactgttttaaat
gttttagtTTTTAGGAAGAGACTTTTGTACATTTAATTTGTTACGTTTTA
CATCTTTCATAACCTAACAAATGCATTATAAATACAACAAAGAGACATGA
ATTTCTTGAAACATCTTTGTGTTTTAGActccctttttttaaacaaaaaa
aaacatgccaAGAAAATAGGAATATAAGAAAATATACTAATCAGTTGTGA
CTGTTCAATCTACCTAAAAATACAGTTTCACTTTTAAaagtttgtaattt
ttttatgaagcATAAcgtttttttgcaatattttgaaattgttcCAAAAT
TATGAAAGTTAGAACAGTATGGGGACCGATTCGTAGATAACATGGGGTGA
ATCCTTTCCACAATGCAAAAACTCCCTCGTTGCGAATAACTTTTGTCAAA
ACATCTAGTCCACCTTTGTACTCAGGTTTCCCATCGATATATTTCATGCT
TTGGATTCTGGTCTTCACGATATCTGGTGGAAGTGATGCCCACGTTGTGG
CAAGACCACTCACCATGCTTgcgcaaaaatgacaaaaaacattatcatca
aaatacttCAGAGTCAGCAAATATTGTTTCACTTGAGAATAAGTTGCAAG
TTGAGCAGCATTTACAAAAATGGCCCTTGTAATTGTTGGTAAACATCCTC
TCCAGAGCGTTAAAACTCCTTCCTCCTTCACGACACGGAAAAGAAGCATC
AAATACATTTTTGTAGCCTCTCTGCTCATTTTTAGGAAGTCGACCATCTG
AGGTCATTCTGATCAACGCCAATTCAGCTGGAGTCCCAACAAAAGCTCCA
GTTCCTCCTGCAATCATACCNACGCCAATTCAGCTGGAGTCCCAACAAAA
GCTCCAGTTCCTCCTGCAATCATACCAAAAGCACACTTCTGTAAAAAACT
AACATTCTCTCCTGGTTTTTTGAATGAATCCATCAAAGTTGTGTAAATTC
CTAACCGTGTTGTTGTGTATGTTGCTTGTCTTAATAAACCGGCTGAGAGT
CCATTATAAAGTGAAATAGGTCCTTCACTCCTAGCAATATTGATAAGAGC
ATGGAATGCAGTCTTGTGTTCTCTTGCACCTCCACCAATTCCACTCATCT
GCATTCTTGTTTTGACCAAGTCAAGCGGTTGAACAACGCAGGTAGCTGCC
ATTCCAGCACCTCCTCCCATCATGAATCGAACATATTTTGGAATCTCTAt
gttgtttgacattttgaaatcaACCAAACAACTTGTGCTTCTATTAACTT
GAATTAAATAACTTGAACTTGGCACTTGGGACAGGCCGACAGGACAAAAC
AGGCAGGAACTGAGCACTTtccaatttccgtgtttacatTTTTGCCTCAC
CTTCCCGtttaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_463:325111..326714+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067090 ID=TCONS_00067090|Name=TCONS_00067090|organism=Clytia hemisphaerica|type=transcript|length=1604bp|location=Sequence derived from alignment at scaffold_463:325111..326714+ (Clytia hemisphaerica)
CAGTAAttctactttctttttctaaaaaattaaagctaaaaaaacaaaac aaaacaattagaaaaatgttttaaagaacaaaataaatactgttttaaat gttttagtTTTTAGGAAGAGACTTTTGTACATTTAATTTGTTACGTTTTA CATCTTTCATAACCTAACAAATGCATTATAAATACAACAAAGAGACATGA ATTTCTTGAAACATCTTTGTGTTTTAGActccctttttttaaacaaaaaa aaacatgccaAGAAAATAGGAATATAAGAAAATATACTAATCAGTTGTGA CTGTTCAATCTACCTAAAAATACAGTTTCACTTTTAAaagtttgtaattt ttttatgaagcATAAcgtttttttgcaatattttgaaattgttcCAAAAT TATGAAAGTTAGAACAGTATGGGGACCGATTCGTAGATAACATGGGGTGA ATCCTTTCCACAATGCAAAAACTCCCTCGTTGCGAATAACTTTTGTCAAA ACATCTAGTCCACCTTTGTACTCAGGTTTCCCATCGATATATTTCATGCT TTGGATTCTGGTCTTCACGATATCTGGTGGAAGTGATGCCCACGTTGTGG CAAGACCACTCACCATGCTTgcgcaaaaatgacaaaaaacattatcatca aaatacttCAGAGTCAGCAAATATTGTTTCACTTGAGAATAAGTTGCAAG TTGAGCAGCATTTACAAAAATGGCCCTTGTAATTGTTGGTAAACATCCTC TCCAGAGCGTTAAAACTCCTTCCTCCTTCACGACACGGAAAAGAGCATCA AATACATTTTTGTAGCCTCTCTGCTCATTTTTAGGAAGTCGACCATCTGA GGTCATTCTGATCAACGCCAATTCAGCTGGAGTCCCAACAAAAGCTCCAG NAAAAACTCCTTCTTCCTTCACGACACGGAAAAGAGCATCAAATACATTT TTGTAGCCTCTCTGCTCATTTTTAGGAAGTCGACCATCTGAGGTCATTCT GATCAACGCCAATTCAGCTGGAGTCCCAACAAAAGCTCCAGTTCCTCCTG CAATCATACCNACGCCAATTCAGCTGGAGTCCCAACAAAAGCTCCAGTTC CTCCTGCAATCATACCAAAAGCACACTTCTGTAAAAAACTAACATTCTCT CCTGGTTTTTTGAATGAATCCATCAAAGTTGTGTAAATTCCTAACCGTGT TGTTGTGTATGTTGCTTGTCTTAATAAACCGGCTGAGAGTCCATTATAAA GTGAAATAGGTCCTTCACTCCTAGCAATATTGATAAGAGCATGGAATGCA GTCTTGTGTTCTCTTGCACCTCCACCAATTCCACTCATCTGCATTCTTGT TTTGACCAAGTCAAGCGGTTGAACAACGCAGGTAGCTGCCATTCCAGCAC CTCCTCCCATCATGAATCGAACATATTTTGGAATCTCTAtgttgtttgac attttgaaatcaACCAAACAACTTGTGCTTCTATTAACTTGAATTAAATA ACTTGAACTTGGCACTTGGGACAGGCCGACAGGACAAAACAGGCAGGAAC TGAGCACTTtccaatttccgtgtttacatTTTTGCCTCACCTTCCCGttt aaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041921XLOC_041921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067090-exon-scaffold_463-1491911889:325111..325904TCONS_00067090-exon-scaffold_463-1491911889:325111..325904Clytia hemisphaericaexon
TCONS_00067090-exon-scaffold_463-1510915933:325111..325904TCONS_00067090-exon-scaffold_463-1510915933:325111..325904Clytia hemisphaericaexon
TCONS_00067090-exon-scaffold_463-1575043694:325111..325904TCONS_00067090-exon-scaffold_463-1575043694:325111..325904Clytia hemisphaericaexon
TCONS_00067090-exon-scaffold_463-1491911889:326045..326714TCONS_00067090-exon-scaffold_463-1491911889:326045..326714Clytia hemisphaericaexon
TCONS_00067090-exon-scaffold_463-1510915933:326045..326714TCONS_00067090-exon-scaffold_463-1510915933:326045..326714Clytia hemisphaericaexon
TCONS_00067090-exon-scaffold_463-1575043694:326045..326714TCONS_00067090-exon-scaffold_463-1575043694:326045..326714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_463supercontigscaffold_463:325111..326714 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
78.4185 74.844 48.4277 47.3163 18.1463 15.2432 28.1669 30.0102 25.7276 26.9401 18.0721 15.57 12.2018 12.3788 21.0122 22.5321 36.5222 29.6689 4.29725 6.22629 22.2757 20.3975 58.0189 53.4549 25.5254 28.3068 23.839 16.6301 33.2591 33.9817
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018108Mitochondrial_sb/sol_carrier
IPR023395Mt_carrier_dom
Blast
BLAST of TCONS_00067090 vs. Swiss-Prot (Human)
Match: M2OM (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 300.056 bits (767), Expect = 2.331e-97
Identity = 181/313 (57.83%), Postives = 212/313 (67.73%), Query Frame = -3
Query:  356 PKYVRFXXXXXXXXXATCVVQPLDLVKTRMQMSGIGGGAREHKTAFHALINIARSEGPISLYNGLSAGLLRQAXXXXXXXXXXXXLMDSFKKP-GENVSFLQKCAFGMIAGGTGAFVGTPXXXXXXXXXXXXXXXXXXXLNWR*SE*PQMVDFLKMSREATKMYLMLLFRVVKEEGVLTLWRGCLPTITRAIFVNAAQLATYSQVKQYLLTLKYFDDNVFCHFCASMVSGLATTWASLPPDIVKTRIQSMKYIDGKPEYKGGLDVLTKVIRNEGVFALWKGFTPCYLRIGPHTVLTFIILEQFQNIAKKRYAS 1291
            PK V+F+ GG AGM AT  VQPLDLVK RMQ+SG G   RE+KT+FHAL +I ++EG   +Y GLSAGLLRQATYTTTRLGIYT L +      G    FL K   GM AG TGAFVGTPAE+A + +  +  L                       R   K     L R+ +EEGVLTLWRGC+PT+ RA+ VNAAQLA+YSQ KQ+LL   YF DN+ CHFCASM+SGL TT AS+P DI KTRIQ+M+ IDGKPEYK GLDVL KV+R EG F+LWKGFTP Y R+GPHTVLTFI LEQ     K+ + S
Sbjct:   20 PKSVKFLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTSFHALTSILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPAD-------------------QRRGYKNVFNALIRITREEGVLTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIAKTRIQNMRMIDGKPEYKNGLDVLFKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNKAYKRLFLS 313          
The following BLAST results are available for this feature:
BLAST of TCONS_00067090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
M2OM2.331e-9757.83Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
back to top