TCONS_00067079 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067079
Unique Name	TCONS_00067079
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2141

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_463:102164..110720+

transcript sequence

>TCONS_00067079 ID=TCONS_00067079|Name=TCONS_00067079|organism=Clytia hemisphaerica|type=transcript|length=2141bp
gtcgaaactttttttttgtgcgacgctgaaaaaaaaatacaaaaacttta
GCGTGGAAATTTTAAAGTCTCGAAAAGGTTAgtACAACTTTGGTGAAGAT
GTTGCTTTTCCTGCTTTTGATCCTTCCACATGTCGCTGAGCCATTGCTTT
CAAATTACCTGCAAGGAGACTCATCTTCACGTGCTCTTCCCGTGCAAATG
GATATGGCTTCAGAGGCTGGTATCACAATCTGCACTGGTCAAACGCGAAC
AATTTCATGTCGTGATGGAGCCAACATGGCGGTCACCAATGCATTCTGGG
GCAGGATTTCGGACAAAGTGTGTCCATCCGATGATGGTGACCCGGTGACG
GATTGTATCGGGTCACGTGACACGTTACCATTGGTGAGAAAGAAATGCGA
AGGAAAGAAAGAATGCAAACTGTCCGCTAGACACAGAGAATTACAAAACC
AGGGATCGAGCCATTGCGCAGGCGTACAAAAATACTTGGTTGTGAACTAC
ACGTGCGAACCAGAATCTCAAGGAGTGACTTTGTGTGATTCCGTAGAAAC
CGACCTTTTCTGCAGAGCAGGATGGAATATGGAGTTGGCTGATGTCTTCT
GGGGTAGAAGAGCGAGCGCCAAGATGTGTGGCGGGGATGGTGAGATCGAA
TGCGACGCCTCTGAGTCCGCCTCCACATTTCTCAAGAACAAATGTAACGG
ACAAAACAGATGTCATATCAAGGCTGATGCGGACTCACTGGACCCCAAAA
CTCATTCTTCATGTAATGGCATCTTGAAATATTTAATGGTGAATTATGTG
TGCAAACCACAAGAACACTCTAATGATGAAACAGAGAGCGAAGAAGAGAT
GAAAGACGAGACGTCCAAAGAATTGATGGGGATGCTGAACAAACAGAAAA
ATGCTGCTGCCAAGTCTTCAAccaaaaaaatctctaagaaagaagaagta
GCTGAGGAGCCTACTCAACAACATTCTCTCATTATTAACGAAGATTCACT
CTCCTCTTCACCACACGCTAAAACAGTCACAGGAGAAGCGCGCACACAAA
TCGCTGAGTCAGCAAACACGTCACAAAAGGAGGATAAAGTCGAGGTTTCA
GAGCCAAACACAGTTCGCTCAATCCTCGATCGCGCTAAAgaagttttaaa
aacattagATTATGATGGAAGTAGTTCCAGTGAGATTTCAAAACGTGGCG
GTATCATGAGGAGCGCCCCTGCGCCCTCCAGCCGCCAATTTGTTAATGAT
ACAGCAAAGGCGGTAAAACAAGTGGCCGCCCTCGCTCAAACCTTGGTCAA
ACACGCTGAAGCAAAAGcattattgaaaaacaaaaacaaaagccaGTTGA
CCACGAAGAAAGATAACACAAAAATGACACCGACAAAGAGAGGGTTCATA
GCGCCTGAACCTGGACAATTCGGAAACACACCTTAAGcttgatacacctt
ttcgactgtagtcGCGCAGTCAGGCGCGTgcaactttattatttaatttt
ccAACCTAagctcgatccaatccttttttNGCCAATTTGTTAATGATACA
GCAAAGGCGGTAAAACAAGTGGCCGCCCTCGCTCAAACCTTAGTTAAACA
CGCTGAAGCCAAAGcattattgaaaaacaaaaacaaaagccaGTTGACCA
CGAAGAAAGATAACACAAAAATGACACCGACAAAGAGAGGCTTCATAGCG
CCTGAACCTGGACAGTTCGGAAACACACCTTAAGcttgatacaccttttc
gactgtagtcgcgcggtcaggcgcgtgcaactttattatttaatttacca
acCTAagctcgatccaatcctttttttacactatttactattgtctttag
gtgtgaaaaaagactgggacggtttaagGTTGGTagaacggacaaaaaaa
tgcccgcgcggcaattggcggctacggtcgaaaaggtgtatttagtGCAA
ACAATGTGACTAGGTTACAGACAAGCTACAAGGgacatctttggttaaaa
taAATCACGCTCATCTGAACGCCTGACAAACCAGCAGAAACTCTCAAATG
ATAAAAACATTAGAAGAAGACTTTTCAGAAGCctataaataaaaattcat
gtaaatttattttttaaacagaCTTAAGAACAATAGATAAG

Run BLAST on NCBI

transcript from alignment at scaffold_463:102164..110720+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067079 ID=TCONS_00067079|Name=TCONS_00067079|organism=Clytia hemisphaerica|type=transcript|length=8557bp|location=Sequence derived from alignment at scaffold_463:102164..110720+ (Clytia hemisphaerica)
gtcgaaactttttttttgtgcgacgctgaaaaaaaaatacaaaaacttta
GCGTGGAAATTTTAAAGTCTCGAAAAGGTTAgtataatatttcttttgtt
ttttgtctCATTGTTTGTTTTACCTTTTACTTTATTTTACCTCTCTGCAG
AATCTTCATGGATCCAATAAAGCCCGGGTTCACGAACAAAgatttcagtt
tcaaaatttggcCCTTACAGTCTATCTAGAGCGAATCTGGGCAAAAAGAT
CAGCCCCtacattttattgaaatttttgtacatttctTGAGGCAAAGATT
AGCAGATTTTCCGGAACAGTCCCGACGGAGGCGGGGAGACtagggagact
tcagcctccccaacTTTGagcaaattagattttttttctcaaattcctag
tgagttttatctcattttgagccttcagcctccccacttttatggTTGTT
CCACTGGGCCTGGGAATATTATTTTTTCTCGAAATAATTTTACCATAACA
CCTTCGTTTCTCTCCCTTTTTACACTCTTACAATACACTTTCCTTCACAA
TGACCTTTATAATGCGCTTTGGGAAGTCTGATAAACTGTCTTTGAGAGCC
AGGGGCCTTAAAACAACACACTAAACATCAACAGGGAGTGGTTTTGACTC
AGTTGTCAACCTATTTCATACTCGTGTATCagttacaggctatattctat
tttcagtttgaagGGGGAATACAGAAATCTGTGCAGATTTTCCTTCGAGG
CAGAATtcttattcatagaattatatttcacaggtcttaGGTGCCAATGT
TACTtagtataccttcaatatctattttgtcATGTTTCTGTTGTTCCTCT
TTCGTATTTACCTGCTCTAATTCCACCATTCCATGTATAATAATgtttcg
ttttcttgattcgatgtctttttcttcattcttctttttttgttggtttt
tctCTCACTActgatttgaaattatccttGTGTTTCTCAGTTATTCCAgc
gtatgttttttctgatgttttttttttatgtatttcGTCGTTtcctttat
ttcttcttttataatctgcttggtttttatttcaaagtcagccaCCTTAT
TGGTTAAGATGCTTTCGATATCGTTCTTAAGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtttgctttatttcttc
ttttataatctgcttggtttttatttcaaagtcagccatcttattggtta
agatgttttcgatatcgttcttaaggctgcggttctttgctagctggttt
ttgagctttttaatgacgtcgtccttcttctcaatctccctctgcatcat
atgatacgagttctcacctattctactcattagagatcgtgttttccgca
cgcaattctgacatagatattgttcgttataagttttggcaaaaatttgc
agctggtaaagcggtaattgtgtgcactcgtagtgTACCATGCGGTGACA
GTTTCGGCATTTTACACGGTTTTCGTCATCGTCATCTGAGCAGGAGGTGA
GAGTGcgtgtttggttttgtttagcttcttcaaatggttgtttatattgc
tttttgtcggttttttcgttGTTTGTCATCATTTAATTGACTTGGGAATT
CatgaaatattttctattgttGTCGCCTTTGTAAAACTGATTGAAAGTCC
GACGATTCAGTGACGCGGCCTCTACAACAAGATTTTAAAGCCAGGCCCGC
GCCGGCGGAagcttcagcctccccacttttgaacaaaattttttctccaa
ttcctGGCGAATTCTATCTCATTTTGAATCTTTAGCCcctccacttttac
ggttgttccgccgcgCCGGAAAGTCATATTGTAGGCCCTACACTCTACCT
TCAACTCTCTTCAATTCGAATTTCTTCCGTAATTCGATCTAAAATATTGN
GGCCTGAAAGTCATATTGTAGGCCCTACACTCTACCTTCAACTCTCTTCA
ATTCGATTTCTTCTGTAATTCGatctaaaatattggtcccctcagttTTA
ATATGGTATAAATTACTCTCCTAAtatttattcgaatctttctctaattc
gattaaATCTTATCGtgccttgaagatcgaattagagagagttaaaTTCG
TAAATCTTTTGGACAATACCAAGTAACTTTTTCTGTTAGCGATCACGAAA
TGTTTCGTTGTCTTTTAAGGTCAACACAACTTTGGTGAAGATGTTGCTTT
TCCTGCTTTTGATCCTTCCACATGTCGCTGGTAAGTTTCACTTTCACGTC
ATTCATCAcccattctcacagacccactgggaacccttcccactggaaaa
attagccaaaatatcgtccccaatGGAAAATTACACTCTATTtcttgtcc
ccgctgaaaataatcagataagcaaatcctcatcGTAAAATagtgtgcta
ttttttccatccccactgaattttctggcttgaaagcaataaaattcaaa
tccaGGCCAGATGTTCTATAAGGAGTTGAGAGGATTTCTGaataaaccaa
ggaaaatgtTTTGGGAGTGACGATCTCAAAAAGTCTGGGACCCAAAttta
atttcatattttcattgattttctttctaatTTTACAGAGCCATTGCTTT
CAAATTACCTGCAAGGAGACTCATCTTCACGTGCTCTTCCCGTGCAAATG
GATATGGCTTCAGGTCAGTATTTTGGCGTGTaccaaaaaggaaaaataaa
aacagaaaaaccaTTGGAAAATTTTATCTTTCAGTCATCCAAGAATACCT
gcacaattttgatttaaaggttttgcttttaaataagagcgatatcattt
gcttacccatcaattttaatttacaagctttttgatattgaattgacacg
gatgtggagcaagattggtcagaaagaagagtaaggaaaaacaatttttt
tgcttatatcagcacaatatgacaataggcagacactgttctgatatgaa
atatgtgtctgatatgaaatgggaacacttatctaaaaataaaaccttta
actctCTTCTCCAGTAATTGTCATTAAATCCTTAACTTCCAAAAGTTTAG
ACTAAAAACCATGCTCCAAAATAATCCTTTCCACCTTCAATATTCTAGAG
GCTGGTATCACAATCTGCACTGGTCAAACGCGAACAATTTCATGTCGTGA
TGGAGCCAACATGGCGGTCACCAATGCATTCTGGGGCAGGATTTCGGACA
AAGTGTGTCCATCCGATGATGGTGACCCGGTGACGGATTGTATCGGGTCA
CGTGACACGTTACCATTGGTGAGAAAGAAATGCGAAGGAAAGAAAGAATG
CAAACTGTCCGCTAGACACAGGTGAGAATAATCATGCGTTATTTATTGGA
CAGTCTTCTGGGGGGGGAGAttagacagacagacagatatACACCTTCCC
ATAGTGGGAATAGGCCCTAACTTAATCTAGAGATCACTGCAAAACAATGG
AAGTATTTGGTGGCAAAAATTACAATATAAAGCCTTAGGGTAAACAAAAT
TTACCATAAGCTCACCAAAAAGTCCATCtagtacccagagccacttgaTT
CTACTTATGGAAGTGATACAGTTGAGAAAGAAGCTAACTTAGGGACTGGT
TTCGAGTTTGCAAAAACGCATCTTTGAATAAAGCTGATGTAGCAGAGAAT
TTACTGAGAAATGCAAATATCAAGATATTTTGTTACATACTTGCGTAGTT
TTAGTGGCTGACATCTAcccagtagcgtagccaagaggggcacAAAAATT
GTTTATGAGAGCAGGTTTTTATGCTattataattatcttttaaaaccatg
aatagataattacagtgtcataagaatctgctctcctacacaatttttgc
gcccctcttggctacgtTACTGTCTGCCTGATTCAACTTGACTACTCATA
CCTTTTTTTCATTGAGTTTAGggccccgaaggggctagagatgAATATAC
AACCTTTCTCAAACaataaaaagtgaagccttaagttgTCCCcgcatttt
aaaaattttgtttgaaaaacacactagactagtctaagacgagtttcatc
taagaggaacaaacgtgaagacgggagtTTTTCGGGGGTAGCCGTTGTAG
ACTCTATTTTCCGCCgcgcaacatattacgttttaggatatacaaactat
gttatatcatgaTAATATAtcatacggacgatagcatcgtctaaaaACAC
ACACGCGTGTTCTGAATGGGAAAAATAATTGGCTTCTTTTCCCAGCCGGG
AGTTTCGAATCTAGCCCCTTTGGAGCTTTTAACATCAATGCTTTTTCTTT
TCCAGAGAATTACAAAACCAGGGATCGAGCCATTGCGCAGGCGTACAAAA
ATACTTGGTTGTGAACTACACGTGCGAACCAGAATCTCAAGGAGTGACTT
TGTGTGATTCCGTAGAAACCGACCTTTTCTGCAGAGCAGGATGGAATATG
GAGTTGGCTGATGTCTTCTGGGGTAGAAGGTAGGAGGAATAGCCTTAGTA
TTCGGTGATTTCGTTAATTATAatgtacatgtttttctttttataagcat
aacgcttataagcatatgaaggctcagatttgcagattttttaagcaata
catgaaaatatttaatctgaaatatttttcaagtcattaatttttttctg
atcaaAAAGGTTTAAAAGTGGTCTTAAACAAAAAGACATTCCAGGGATag
ccacattccactgctcccaaaatctggaCGCTGTTTGAAtcaaaatgttt
acaaaatttctgagattttgcaaaatttggctcggggtgaattaTAAACA
TTataattcataagcatataataagcatacgCTATGTctaaattctttga
aaacttaagcataCATGAGCCTAACCAAGGGGCAGACacttcccagctga
cacacaacgttctttcaacgttcatctaacgttatatggacgttgtgaac
gttaggtaaagggggggtttcatggttggcggaggagcggaatcggccct
tttttcggacggagtggcggaatttggcgaaaatttagacggaattacgg
aaattgggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNattagacaattttagtgcggaaaaacggaatttagca
aaaaaatttgcggaatttcggaattggtaaaagattttcaaaatttgcgg
aattttcgacaaaaatatcaagagggtctgtttCCATATGGTTTAACATC
GAATACCATAGCATGGTGCTACCCCCATTCTCTTTGGTATAATATGAGTA
TCATTGGTTGGCTTTTATTGATCAGTGTCATTTGACCCAAGTGCGGTAAC
TGAGAATAGAGTAAAAACGTTCCTCATTTTTACACTGAACGAGTGTGAAA
CTATCAGTGAAACCACTTAGGCTTGGTTGTAAATCCTTAATTACGAATCT
TTTTTATCATGATATAAACCTTAAATTCTTCTCCACTTTAGAGCGAGCGC
CAAGATGTGTGGCGGGGATGGTGAGATCGAATGCGACGCCTCTGAGTCCG
CCTCCACATTTCTCAAGAACAAATGTAACGGACAAAACAGATGTCATATC
AAGGCTGATGCGGACTCACTGGACCCCAAAACTCATTCTTCATGTAATGG
CATCTTGAAATATTTAATGGTGAATTATGTGTGCAAACCACAAGAACACT
CTAATGATGAAAGTAAGTGTTTTACCAGAAATCACTcgcaccactttttg
atttcactgatataatcaaaatatattatggtcaaaatctattgagaatt
tatcttttttcctcgtctttcaaaatttggagttcgggcgagaaagtcga
tttcgggccatctctcaaatttaatcggataattcaattcgggaggggtt
tatagagcCCCATGCTATATTCTGAGTCCTACTGGACAATTCTTAAgaac
ttttgaatcctcagatACTAAGGTCGTCTTAAGTCTATTGTGAAAACTCT
TAGAacacttccaaatcgtttgtggttttgaaaattcgtaggaattttcc
ttttttctaaaatattacgaccatgattgtagaaagTTACTACAGTCCTT
TTGTGAGTGCTATTAGAATCATAAAAAGCGAGCTAAGGAACTGGGGCGAG
TTTGATTTCAACCTTATGATGAAATCATCCCTTTAAAACCAAATGTCAGT
TGTTAACAAATATATAGTCTTCATAACTCAGGAACAAACTTGTATTCCTT
ACTGTGCGTATTAAGCTATGTATTTTACTGTGTCTTCATCGAAAGCTTTC
CCCAAAATAATGTCTTGCTGTCTCCAGTTTCATAGCCTACTACTACTTAA
CAAGGGGGGACAGCTGTTTTATCCTATCTTGTTTGGAAATTTCGAGATAT
TCGTCAACATAATAcagttatttttttgaaattttagttttCTAGTCAGA
TGCTGAGAAAGTTGTTCGGTTGAAGCGATTATATTCGTTAGGTCTGACTA
GACACGAGTCTACTTTGCACTTTCCTCTTCTCTTTTTGGAACTGAGGTGG
CGTTCTAAGGCCGAATATCCCTAAGTGTCGCTTCAAATGTGAAGAAGGAA
GGTGGAATtctcattttttctttcaactGTCAAGCTTATTGCATAAGGTT
TTCTGCTGGTTTTTTATGCCAATTAAGGAAATTAGAAGACGACTGGATGT
ATGTACaaaagtttcaagtcctcacgacCACCCAGTCCGACGCTAGGGGA
GGGGggtctttacggtcccgtacggGTCCTTTACGGCATGGAAATTAGGT
CTACAAAATAGATCTTACAGTGGCTTTTAGTACACAACCGACCATGGTAG
TGACTTTTTGAAAGATTATTCGTCCTATAAATGCCTCATATGGTAATAAT
GGTCGAAAAACGGTCTCTTTACacccttttcattttttacttcaCAGCAG
AGAGCGAAGAAGAGATGAAAGACGAGACGTCCAAAGAATTGATGGGGATG
CTGAACAAACAGAAAAATGCTGCTGCCAAGTCTTCAAccaaaaaaatctc
taagaaagaagaagtaGCTGAGGAGCCTACTCAACAACATTCTCTCATTA
TTAACGAAGATTCACTCTCCTCTTCACCACACGCTAAAACAGTCACAGGA
GAAGCGCGCACACAAATCGCTGAGTCAGCAAACACGTCACAAAAGGAGGA
TAAAGTCGAGGTTTCAGAGCCAAACACAGTTCGCTCAATCCTCGATCGCG
CTAAAgaagttttaaaaacattagATTATGATGGAAGTAGTTCCAGTGAG
ATTTCAAAACGTGGCGGTATCATGAGGAGCGCCCCTGCGCCCTCCAGCCG
CCAATTTGTTAATGATACAGCAAAGGCGGTAAAACAAGTGGCCGCCCTCG
CTCAAACCTTGGTCAAACACGCTGAAGCAAAAGcattattgaaaaacaaa
aacaaaagccaGTTGACCACGAAGAAAGATAACACAAAAATGACACCGAC
AAAGAGAGGGTTCATAGCGCCTGAACCTGGACAATTCGGAAACACACCTT
AAGcttgatacaccttttcgactgtagtcGCGCAGTCAGGCGCGTgcaac
tttattatttaattttccAACCTAagctcgatccaatccttttttNGCCA
ATTTGTTAATGATACAGCAAAGGCGGTAAAACAAGTGGCCGCCCTCGCTC
AAACCTTAGTTAAACACGCTGAAGCCAAAGcattattgaaaaacaaaaac
aaaagccaGTTGACCACGAAGAAAGATAACACAAAAATGACACCGACAAA
GAGAGGCTTCATAGCGCCTGAACCTGGACAGTTCGGAAACACACCTTAAG
cttgatacaccttttcgactgtagtcgcgcggtcaggcgcgtgcaacttt
attatttaatttaccaacCTAagctcgatccaatcctttttttacactat
ttactattgtctttaggtgtgaaaaaagactgggacggtttaagGTTGGT
agaacggacaaaaaaatgcccgcgcggcaattggcggctacggtcgaaaa
ggtgtatttagtGCAAACAATGTGACTAGGTTACAGACAAGCTACAAGGg
acatctttggttaaaataAATCACGCTCATCTGAACGCCTGACAAACCAG
CAGAAACTCTCAAATGATAAAAACATTAGAAGAAGACTTTTCAGAAGCct
ataaataaaaattcatgtaaatttattttttaaacagaCTTAAGAACAAT
AGATAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041913	XLOC_041913	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_463	supercontig	scaffold_463:102164..110720 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	16.9956	25.1375	7.69753	6.50897	9.96998	8.94546	24.4276	25.9746	12.5718	28.3593	18.3763	19.5344	0.254925	0.204562	6.11474	7.55583	5.50224	5.81906	24.6565	23.8303	0.896585	0.233804	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00067079 vs. Swiss-Prot (Human)

BLAST of TCONS_00067079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00067079 (transcript) - C. hemisphaerica