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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067070 ID=TCONS_00067070|Name=TCONS_00067070|organism=Clytia hemisphaerica|type=transcript|length=709bp
CCGAGGGGAACCAAAGGGGTTGAACAGAGACATGGCATATCAGTGATCAT
ATCAGTTCTTCGAAAAATAGTGCACACGTAAAATAGGAATAGACTACGAA
AATAAAAGGTCCAAATCCAACTGTGTAGtgtaaaagaaaattgatataTA
AAGAATGAAAACCAAGAAGGGAGAAAATCTGAGAGCGTGCGCTGGGCATG
CAAGCGCTGCGACAGAGGCATGTGGAGGTACAGATAGATAGCATCTGATT
TCCAGTCACCCATCACTGCAATCGTGTCAAGTGGGATCCCAGCCTCTAAT
GCAAAAGAGGCTCCTCCACGCCGAAAAGAATGTGAGCCGTATTGAGACGA
GGACAGGCCAATGTTGGAGAGATGGTTGCGGAAAGAAAGCATCAAGTCCC
TATAGGTGAAAATCCTATCTGAGCCATAAAACGAGTCCCTCCAACAAAAG
GCCTGAGCTTGGGGTCCCGCCCCAGGGGTCAACTGAAAAGCGTGGTTTAC
AGCCGAAAGAGGACAAAGGGGAGAAGACATGGCAACCAAGGGTATAGTAA
CAGTGGGTTGACCTAGCTGCATAGTCTTGCTCCACCTGACCCTGATGTAA
ACTGTAGAAGGATCCAGGGTGAAGTCAGACCTGACAAGAAAGGTAGCTGG
GGAAAAATCCTGATGGGAGAGAGGGAGGAGATGACTCTTcctaaacaaat
caaaaaacg Run BLAST on NCBI protein sequence of TCONS_00067070-protein >TCONS_00067070-protein ID=TCONS_00067070-protein|Name=TCONS_00067070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
FFDLFRKSHLLPLSHQDFSPATFLVRSDFTLDPSTVYIRVRWSKTMQLGQ
PTVTIPLVAMSSPLCPLSAVNHAFQLTPGAGPQAQAFCWRDSFYGSDRIF
TYRDLMLSFRNHLSNIGLSSSQYGSHSFRRGGASFALEAGIPLDTIAVMG
DWKSDAIYLYLHMPLSQRLHAQRTLSDFLPSWFSFFIYQFSFTLHSWIWT
FYFRSLFLFYVCTIFRRTDMITDMPCLCSTPLVPL Run BLAST on NCBI transcript from alignment at scaffold_462:971858..972566 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067070 ID=TCONS_00067070|Name=TCONS_00067070|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at scaffold_462:971858..972566 (Clytia hemisphaerica)
cgttttttgatttgtttaggAAGAGTCATCTCCTCCCTCTCTCCCATCAG
GATTTTTCCCCAGCTACCTTTCTTGTCAGGTCTGACTTCACCCTGGATCC
TTCTACAGTTTACATCAGGGTCAGGTGGAGCAAGACTATGCAGCTAGGTC
AACCCACTGTTACTATACCCTTGGTTGCCATGTCTTCTCCCCTTTGTCCT
CTTTCGGCTGTAAACCACGCTTTTCAGTTGACCCCTGGGGCGGGACCCCA
AGCTCAGGCCTTTTGTTGGAGGGACTCGTTTTATGGCTCAGATAGGATTT
TCACCTATAGGGACTTGATGCTTTCTTTCCGCAACCATCTCTCCAACATT
GGCCTGTCCTCGTCTCAATACGGCTCACATTCTTTTCGGCGTGGAGGAGC
CTCTTTTGCATTAGAGGCTGGGATCCCACTTGACACGATTGCAGTGATGG
GTGACTGGAAATCAGATGCTATCTATCTGTACCTCCACATGCCTCTGTCG
CAGCGCTTGCATGCCCAGCGCACGCTCTCAGATTTTCTCCCTTCTTGGTT
TTCATTCTTTAtatatcaattttcttttacaCTACACAGTTGGATTTGGA
CCTTTTATTTTCGTAGTCTATTCCTATTTTACGTGTGCACTATTTTTCGA
AGAACTGATATGATCACTGATATGCCATGTCTCTGTTCAACCCCTTTGGT
TCCCCTCGG Coding sequence (CDS) from alignment at scaffold_462:971858..972566 >TCONS_00067070 ID=TCONS_00067070|Name=TCONS_00067070|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_462:971858..972566 (Clytia hemisphaerica)
ttttttgatttgtttaggAAGAGTCATCTCCTCCCTCTCTCCCATCAGGA
TTTTTCCCCAGCTACCTTTCTTGTCAGGTCTGACTTCACCCTGGATCCTT
CTACAGTTTACATCAGGGTCAGGTGGAGCAAGACTATGCAGCTAGGTCAA
CCCACTGTTACTATACCCTTGGTTGCCATGTCTTCTCCCCTTTGTCCTCT
TTCGGCTGTAAACCACGCTTTTCAGTTGACCCCTGGGGCGGGACCCCAAG
CTCAGGCCTTTTGTTGGAGGGACTCGTTTTATGGCTCAGATAGGATTTTC
ACCTATAGGGACTTGATGCTTTCTTTCCGCAACCATCTCTCCAACATTGG
CCTGTCCTCGTCTCAATACGGCTCACATTCTTTTCGGCGTGGAGGAGCCT
CTTTTGCATTAGAGGCTGGGATCCCACTTGACACGATTGCAGTGATGGGT
GACTGGAAATCAGATGCTATCTATCTGTACCTCCACATGCCTCTGTCGCA
GCGCTTGCATGCCCAGCGCACGCTCTCAGATTTTCTCCCTTCTTGGTTTT
CATTCTTTAtatatcaattttcttttacaCTACACAGTTGGATTTGGACC
TTTTATTTTCGTAGTCTATTCCTATTTTACGTGTGCACTATTTTTCGAAG
AACTGATATGATCACTGATATGCCATGTCTCTGTTCAACCCCTTTGGTTC
CCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067070-exon-scaffold_462-1491911889:971858..972566 | TCONS_00067070-exon-scaffold_462-1491911889:971858..972566 | Clytia hemisphaerica | exon |
| TCONS_00067070-exon-scaffold_462-1510915933:971858..972566 | TCONS_00067070-exon-scaffold_462-1510915933:971858..972566 | Clytia hemisphaerica | exon |
| TCONS_00067070-exon-scaffold_462-1575043694:971858..972566 | TCONS_00067070-exon-scaffold_462-1575043694:971858..972566 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:971858..972566 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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