TCONS_00067070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067070
Unique NameTCONS_00067070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067070 ID=TCONS_00067070|Name=TCONS_00067070|organism=Clytia hemisphaerica|type=transcript|length=709bp
CCGAGGGGAACCAAAGGGGTTGAACAGAGACATGGCATATCAGTGATCAT
ATCAGTTCTTCGAAAAATAGTGCACACGTAAAATAGGAATAGACTACGAA
AATAAAAGGTCCAAATCCAACTGTGTAGtgtaaaagaaaattgatataTA
AAGAATGAAAACCAAGAAGGGAGAAAATCTGAGAGCGTGCGCTGGGCATG
CAAGCGCTGCGACAGAGGCATGTGGAGGTACAGATAGATAGCATCTGATT
TCCAGTCACCCATCACTGCAATCGTGTCAAGTGGGATCCCAGCCTCTAAT
GCAAAAGAGGCTCCTCCACGCCGAAAAGAATGTGAGCCGTATTGAGACGA
GGACAGGCCAATGTTGGAGAGATGGTTGCGGAAAGAAAGCATCAAGTCCC
TATAGGTGAAAATCCTATCTGAGCCATAAAACGAGTCCCTCCAACAAAAG
GCCTGAGCTTGGGGTCCCGCCCCAGGGGTCAACTGAAAAGCGTGGTTTAC
AGCCGAAAGAGGACAAAGGGGAGAAGACATGGCAACCAAGGGTATAGTAA
CAGTGGGTTGACCTAGCTGCATAGTCTTGCTCCACCTGACCCTGATGTAA
ACTGTAGAAGGATCCAGGGTGAAGTCAGACCTGACAAGAAAGGTAGCTGG
GGAAAAATCCTGATGGGAGAGAGGGAGGAGATGACTCTTcctaaacaaat
caaaaaacg
Run BLAST on NCBI

protein sequence of TCONS_00067070-protein

>TCONS_00067070-protein ID=TCONS_00067070-protein|Name=TCONS_00067070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
FFDLFRKSHLLPLSHQDFSPATFLVRSDFTLDPSTVYIRVRWSKTMQLGQ
PTVTIPLVAMSSPLCPLSAVNHAFQLTPGAGPQAQAFCWRDSFYGSDRIF
TYRDLMLSFRNHLSNIGLSSSQYGSHSFRRGGASFALEAGIPLDTIAVMG
DWKSDAIYLYLHMPLSQRLHAQRTLSDFLPSWFSFFIYQFSFTLHSWIWT
FYFRSLFLFYVCTIFRRTDMITDMPCLCSTPLVPL
Run BLAST on NCBI

transcript from alignment at scaffold_462:971858..972566

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067070 ID=TCONS_00067070|Name=TCONS_00067070|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at scaffold_462:971858..972566 (Clytia hemisphaerica)
cgttttttgatttgtttaggAAGAGTCATCTCCTCCCTCTCTCCCATCAG GATTTTTCCCCAGCTACCTTTCTTGTCAGGTCTGACTTCACCCTGGATCC TTCTACAGTTTACATCAGGGTCAGGTGGAGCAAGACTATGCAGCTAGGTC AACCCACTGTTACTATACCCTTGGTTGCCATGTCTTCTCCCCTTTGTCCT CTTTCGGCTGTAAACCACGCTTTTCAGTTGACCCCTGGGGCGGGACCCCA AGCTCAGGCCTTTTGTTGGAGGGACTCGTTTTATGGCTCAGATAGGATTT TCACCTATAGGGACTTGATGCTTTCTTTCCGCAACCATCTCTCCAACATT GGCCTGTCCTCGTCTCAATACGGCTCACATTCTTTTCGGCGTGGAGGAGC CTCTTTTGCATTAGAGGCTGGGATCCCACTTGACACGATTGCAGTGATGG GTGACTGGAAATCAGATGCTATCTATCTGTACCTCCACATGCCTCTGTCG CAGCGCTTGCATGCCCAGCGCACGCTCTCAGATTTTCTCCCTTCTTGGTT TTCATTCTTTAtatatcaattttcttttacaCTACACAGTTGGATTTGGA CCTTTTATTTTCGTAGTCTATTCCTATTTTACGTGTGCACTATTTTTCGA AGAACTGATATGATCACTGATATGCCATGTCTCTGTTCAACCCCTTTGGT TCCCCTCGG

Coding sequence (CDS) from alignment at scaffold_462:971858..972566

>TCONS_00067070 ID=TCONS_00067070|Name=TCONS_00067070|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_462:971858..972566 (Clytia hemisphaerica)
ttttttgatttgtttaggAAGAGTCATCTCCTCCCTCTCTCCCATCAGGA
TTTTTCCCCAGCTACCTTTCTTGTCAGGTCTGACTTCACCCTGGATCCTT
CTACAGTTTACATCAGGGTCAGGTGGAGCAAGACTATGCAGCTAGGTCAA
CCCACTGTTACTATACCCTTGGTTGCCATGTCTTCTCCCCTTTGTCCTCT
TTCGGCTGTAAACCACGCTTTTCAGTTGACCCCTGGGGCGGGACCCCAAG
CTCAGGCCTTTTGTTGGAGGGACTCGTTTTATGGCTCAGATAGGATTTTC
ACCTATAGGGACTTGATGCTTTCTTTCCGCAACCATCTCTCCAACATTGG
CCTGTCCTCGTCTCAATACGGCTCACATTCTTTTCGGCGTGGAGGAGCCT
CTTTTGCATTAGAGGCTGGGATCCCACTTGACACGATTGCAGTGATGGGT
GACTGGAAATCAGATGCTATCTATCTGTACCTCCACATGCCTCTGTCGCA
GCGCTTGCATGCCCAGCGCACGCTCTCAGATTTTCTCCCTTCTTGGTTTT
CATTCTTTAtatatcaattttcttttacaCTACACAGTTGGATTTGGACC
TTTTATTTTCGTAGTCTATTCCTATTTTACGTGTGCACTATTTTTCGAAG
AACTGATATGATCACTGATATGCCATGTCTCTGTTCAACCCCTTTGGTTC
CCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041909XLOC_041909Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067070-proteinTCONS_00067070-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067070-exon-scaffold_462-1491911889:971858..972566TCONS_00067070-exon-scaffold_462-1491911889:971858..972566Clytia hemisphaericaexon
TCONS_00067070-exon-scaffold_462-1510915933:971858..972566TCONS_00067070-exon-scaffold_462-1510915933:971858..972566Clytia hemisphaericaexon
TCONS_00067070-exon-scaffold_462-1575043694:971858..972566TCONS_00067070-exon-scaffold_462-1575043694:971858..972566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:971858..972566 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.45816 0.412786 0.340975 0.36465 9.66935 7.70731 5.73463 8.20953 5.33453 5.96785 3.6213 5.33058 2.91115 2.27072 2.52154 2.82018 2.50217 2.43509 1.44867 0.805039 1.47455 1.57299 0.91205 0.393419 0.98261 1.89655 0.997546 0.721389 0.323721 0.130789
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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