TCONS_00067067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067067
Unique NameTCONS_00067067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067067 ID=TCONS_00067067|Name=TCONS_00067067|organism=Clytia hemisphaerica|type=transcript|length=409bp
GCTCCAAGTGCACTGACAATTGATGGCTTAGAATTAACAGCGACATAATT
ACCGGCCACAATCTCCTCGAGGATAGCTTTGTCAACTTTCTCTTTAAAGA
TTCGACCGGTGGCCAGACTGCCACGAGTATTTAGTCGCCAGTTCAAGAAC
CTTCACAGAGTAGGCAAGGTATTCCCTAATCTCCTGCATGGTGGAAAGCT
TAGTTGTAAACaaaagttcataaaaaattCTAAGGTTAGCTATGTTAAAT
TGTTCTACTGTAACAGACGACAGTTTCGGTTTTGTATCTTGCAGAGAAAG
TTTTAGAACACAGTTATCATCACTTGCAAACACTTTTTCTTCTTCTGAAG
GACGTAGCCTCGAAACAAAATCAACTATACGAAGAGGCTTACCACGAGTT
GGATCATTC
Run BLAST on NCBI

transcript from alignment at scaffold_462:969660..970068

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067067 ID=TCONS_00067067|Name=TCONS_00067067|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at scaffold_462:969660..970068 (Clytia hemisphaerica)
GAATGATCCAACTCGTGGTAAGCCTCTTCGTATAGTTGATTTTGTTTCGA
GGCTACGTCCTTCAGAAGAAGAAAAAGTGTTTGCAAGTGATGATAACTGT
GTTCTAAAACTTTCTCTGCAAGATACAAAACCGAAACTGTCGTCTGTTAC
AGTAGAACAATTTAACATAGCTAACCTTAGaattttttatgaacttttGT
TTACAACTAAGCTTTCCACCATGCAGGAGATTAGGGAATACCTTGCCTAC
TCTGTGAAGGTTCTTGAACTGGCGACTAAATACTCGTGGCAGTCTGGCCA
CCGGTCGAATCTTTAAAGAGAAAGTTGACAAAGCTATCCTCGAGGAGATT
GTGGCCGGTAATTATGTCGCTGTTAATTCTAAGCCATCAATTGTCAGTGC
ACTTGGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041906XLOC_041906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067067-exon-scaffold_462-1491911889:969660..970068TCONS_00067067-exon-scaffold_462-1491911889:969660..970068Clytia hemisphaericaexon
TCONS_00067067-exon-scaffold_462-1510915933:969660..970068TCONS_00067067-exon-scaffold_462-1510915933:969660..970068Clytia hemisphaericaexon
TCONS_00067067-exon-scaffold_462-1575043694:969660..970068TCONS_00067067-exon-scaffold_462-1575043694:969660..970068Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:969660..970068 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.475174	0	0	0	0	1.01106	1.23145	1.09891	0.854789	0.880687	0	1.1957	0.926118	0.838606	1.22625	1.8478	0.590758	0.375482	1.10842	0.677046	0.612974	0.380909	0	0.496506	0.000972306	0.737998	0.444907
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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