TCONS_00067065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067065
Unique NameTCONS_00067065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067065 ID=TCONS_00067065|Name=TCONS_00067065|organism=Clytia hemisphaerica|type=transcript|length=731bp
TGACTCGACACTTAACGTGGGGGCTGAATACTTCggcttaatagttggct
tcaaaTTGGTTTATTGGTGGGACATCCAAAAACAccgttttgaaaataaa
agaagcCAAAGGTGGCGTGCTGTTTATCGATGAGACGTATCGCCTAGGCA
ACGATACCTCTGGCCGTGATTACGGCAAGGAGGCTATCGAAACTCTGATG
TCCGTCATGACAAACCCTGACTGCCCAGTGATTTGCGGGGTATCAAAAAG
AAATGCACCAATTCGTTAAAGTAAATGCTGGGCGTTTTCACTGACTTTAC
GGTCGATGACCTCGTCAAAATAACGATGAAACAACTCGAATCTCGTTTTC
CGCGCTTACCACCATTAAACACTGCGAAACATCTTGTGGAATGTTTTTCA
AAGCTGCCAAAAAACATAATTTCTTTGAATAATGCAGCCTTATGCAACGA
CCTTGTTGAGGAAGTGCACTTTGCGCAAGAAGCAAGACTATCCAAACATT
ATTCTCTTGCTGATTTAAGAAAATTCACAGAAGAAGACCTGGCCAAAAGT
ATaaacacttttttgaaaaggacCTTTGAGTTAAACTCGGGGGTAAAGAA
ATTGAAGGAATCAGGATTTGGTGATGGCGATGTTAGGGAATATGATACAG
ATATATGCTCTATATGCAGAGAAAAACTTTGAACGGAAGATGGTTTGCAT
TTGTAACACGGCATTTTTTGACCAGTAGAAT
Run BLAST on NCBI

protein sequence of TCONS_00067065-protein

>TCONS_00067065-protein ID=TCONS_00067065-protein|Name=TCONS_00067065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MLGVFTDFTVDDLVKITMKQLESRFPRLPPLNTAKHLVECFSKLPKNIIS
LNNAALCNDLVEEVHFAQEARLSKHYSLADLRKFTEEDLAKSINTFLKRT
FELNSGVKKLKESGFGDGDVREYDTDICSICREKL
Run BLAST on NCBI

transcript from alignment at scaffold_462:965730..966460

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067065 ID=TCONS_00067065|Name=TCONS_00067065|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at scaffold_462:965730..966460 (Clytia hemisphaerica)
ATTCTACTGGTCAAAAAATGCCGTGTTACAAATGCAAACCATCTTCCGTT
CAAAGTTTTTCTCTGCATATAGAGCATATATCTGTATCATATTCCCTAAC
ATCGCCATCACCAAATCCTGATTCCTTCAATTTCTTTACCCCCGAGTTTA
ACTCAAAGgtccttttcaaaaaagtgtttATACTTTTGGCCAGGTCTTCT
TCTGTGAATTTTCTTAAATCAGCAAGAGAATAATGTTTGGATAGTCTTGC
TTCTTGCGCAAAGTGCACTTCCTCAACAAGGTCGTTGCATAAGGCTGCAT
TATTCAAAGAAATTATGTTTTTTGGCAGCTTTGAAAAACATTCCACAAGA
TGTTTCGCAGTGTTTAATGGTGGTAAGCGCGGAAAACGAGATTCGAGTTG
TTTCATCGTTATTTTGACGAGGTCATCGACCGTAAAGTCAGTGAAAACGC
CCAGCATTTACTTTAACGAATTGGTGCATTTCTTTTTGATACCCCGCAAA
TCACTGGGCAGTCAGGGTTTGTCATGACGGACATCAGAGTTTCGATAGCC
TCCTTGCCGTAATCACGGCCAGAGGTATCGTTGCCTAGGCGATACGTCTC
ATCGATAAACAGCACGCCACCTTTGgcttcttttattttcaaaacggTGT
TTTTGGATGTCCCACCAATAAACCAAtttgaagccaactattaagccGAA
GTATTCAGCCCCCACGTTAAGTGTCGAGTCA

Coding sequence (CDS) from alignment at scaffold_462:965730..966460

>TCONS_00067065 ID=TCONS_00067065|Name=TCONS_00067065|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_462:965730..966460 (Clytia hemisphaerica)
TCAAAGTTTTTCTCTGCATATAGAGCATATATCTGTATCATATTCCCTAA
CATCGCCATCACCAAATCCTGATTCCTTCAATTTCTTTACCCCCGAGTTT
AACTCAAAGgtccttttcaaaaaagtgtttATACTTTTGGCCAGGTCTTC
TTCTGTGAATTTTCTTAAATCAGCAAGAGAATAATGTTTGGATAGTCTTG
CTTCTTGCGCAAAGTGCACTTCCTCAACAAGGTCGTTGCATAAGGCTGCA
TTATTCAAAGAAATTATGTTTTTTGGCAGCTTTGAAAAACATTCCACAAG
ATGTTTCGCAGTGTTTAATGGTGGTAAGCGCGGAAAACGAGATTCGAGTT
GTTTCATCGTTATTTTGACGAGGTCATCGACCGTAAAGTCAGTGAAAACG
CCCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041904XLOC_041904Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067065-proteinTCONS_00067065-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067065-exon-scaffold_462-1491911889:965730..966460TCONS_00067065-exon-scaffold_462-1491911889:965730..966460Clytia hemisphaericaexon
TCONS_00067065-exon-scaffold_462-1510915933:965730..966460TCONS_00067065-exon-scaffold_462-1510915933:965730..966460Clytia hemisphaericaexon
TCONS_00067065-exon-scaffold_462-1575043694:965730..966460TCONS_00067065-exon-scaffold_462-1575043694:965730..966460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:965730..966460 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.300695	0.29172	0.0769535	0.376435	1.73977	1.5219	1.65863	1.66351	0.769509	0.683747	0.498557	1.00699	0.412248	0.465438	0.983132	0.682936	0.714295	1.1775	0.92628	0.919074	0.3238	0.433253	0	0.229185	0	0	0.0931935	0.113212	0.226308	0.153714
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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