TCONS_00067063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067063
Unique NameTCONS_00067063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067063 ID=TCONS_00067063|Name=TCONS_00067063|organism=Clytia hemisphaerica|type=transcript|length=714bp
AATTAATTTTGTTGCTTTTCGTATGACAAAAGAACGGCCAGGAAAAGAGT
TGCAGTGGCTTCTTCACTGTCGAGTTTAAACTGTGACGCTGAACGGGTTT
TAAAAGCTAGGACTTGGAAACtcgtcaaaaaaatattttacaagtcAAAA
TCGCGAGTAAAAGCCCATTTTTTactcaaaatatacaaaaattgaGTTCT
AAAGCTTGATAACGATATGACAACGATAAGGTGTTCGATTTAGAACAGGA
TAGCCATAGCTTCAAAGTGTCAAGTACGGACAACGTTCtcagccaaattt
cagtcattttAAGTCACTGGAAGTCCAAAAACTACCAGGATTGCTTCGAC
TCTCATATGGGTAGACGCTTAATAACCACTTGTGGCTATCTGGGGAATCC
CAAAACGACCAAAATGAAGAGTAGGGTCCATTTGGACCAACGGGTTAATT
TCAGagaattttgcgatttttgcgAATGACCTCtagattcgcgaaattaa
atagcCGCTTGATtcgcaaaaattaattcccaagaaatacaatttttaaa
tttccttGGTAATTTTTTGCTCGTTATAACTTAAAAGCGGGGTTTTTAAT
TTAGCTTACCAGTATTTTCGCAGGGGAAATACAATTTCGCGAAAAATCTC
TGACATTAAAGTAGTGGTTGAATCTGcattcacgtttttttttattagag
caCCAAAATTTGGG
Run BLAST on NCBI

transcript from alignment at scaffold_462:958121..958834

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067063 ID=TCONS_00067063|Name=TCONS_00067063|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at scaffold_462:958121..958834 (Clytia hemisphaerica)
CCCAAATTTTGGtgctctaataaaaaaaaacgtgaatgCAGATTCAACCA
CTACTTTAATGTCAGAGATTTTTCGCGAAATTGTATTTCCCCTGCGAAAA
TACTGGTAAGCTAAATTAAAAACCCCGCTTTTAAGTTATAACGAGCAAAA
AATTACCaaggaaatttaaaaattgtatttcttgggaattaatttttgcg
aATCAAGCGgctatttaatttcgcgaatctaGAGGTCATTcgcaaaaatc
gcaaaattctCTGAAATTAACCCGTTGGTCCAAATGGACCCTACTCTTCA
TTTTGGTCGTTTTGGGATTCCCCAGATAGCCACAAGTGGTTATTAAGCGT
CTACCCATATGAGAGTCGAAGCAATCCTGGTAGTTTTTGGACTTCCAGTG
ACTTaaaatgactgaaatttggctgaGAACGTTGTCCGTACTTGACACTT
TGAAGCTATGGCTATCCTGTTCTAAATCGAACACCTTATCGTTGTCATAT
CGTTATCAAGCTTTAGAACtcaatttttgtatattttgagtAAAAAATGG
GCTTTTACTCGCGATTTTgacttgtaaaatatttttttgacgaGTTTCCA
AGTCCTAGCTTTTAAAACCCGTTCAGCGTCACAGTTTAAACTCGACAGTG
AAGAAGCCACTGCAACTCTTTTCCTGGCCGTTCTTTTGTCATACGAAAAG
CAACAAAATTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041902XLOC_041902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067063-exon-scaffold_462-1491911889:958121..958834TCONS_00067063-exon-scaffold_462-1491911889:958121..958834Clytia hemisphaericaexon
TCONS_00067063-exon-scaffold_462-1510915933:958121..958834TCONS_00067063-exon-scaffold_462-1510915933:958121..958834Clytia hemisphaericaexon
TCONS_00067063-exon-scaffold_462-1575043694:958121..958834TCONS_00067063-exon-scaffold_462-1575043694:958121..958834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:958121..958834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.137015	0.079544	0.0778214	0	0.14973	0.0903213	0.169115	0	0.0733298	0	0.0467881	0.046723	0	0	0	0.0527386	0.108111	0.0974751	0	0.0679245	0.165262	0.0805507	0	0	0.134634	0	0	0.0779753	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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