TCONS_00067059 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067059
Unique NameTCONS_00067059
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067059 ID=TCONS_00067059|Name=TCONS_00067059|organism=Clytia hemisphaerica|type=transcript|length=680bp
TTTCTcctaataaaatttctatctaaCGTACTCAAGGTGAGCTTCCATTC
AATGGTTACCATAACTACGaacataaataataaaattgcaGAACTATGTC
CTCATGACAACACTCCCTCGACAATGGAGATTGGTCCCCAATCTTTCGAA
TAGTTTTCTTAAAATGGATCTATatcgttttcatttttttttgttatatt
tttgcaTTGCTCGTAatgttctttttgaaaaagCGTTCTTTGAACCAACA
GTTAATCGCTAAATGGCCAGGTTCTTGACAAACGTAACAAAGTTGGTCAT
TGCCCATGGTTTTGGACTGGTGTGCTTTATTTTCGGACATTTCTCGATCT
CTCGTAAAGGGTTTTTTCGATTTTGACGATTTTCTCTTTTCGATTGACAA
CTTCAGCTTCAGTCTTCTAACAGCTTTTTCGTACGAATCAATCTCGTTCA
GGAACAAATCATTTTGAGTGTTTTCGTCTAAACCAGCCATAAAGAAATCT
AACTTTTCATCTGGTTTAACATTCAGCTCGGTAAACATTTGTTCCATTTT
CTCAACATATTCATCTAACGTAGACTGTCCCTGTTTGATAGAATAGGGGT
cctttttcaaaagagattcaTTGTCAAACTCAGTAGTCAGACTTTCAATG
GCTTTATCATACGTATTCTTTCGCTCGTTG
Run BLAST on NCBI

protein sequence of TCONS_00067059-protein

>TCONS_00067059-protein ID=TCONS_00067059-protein|Name=TCONS_00067059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
NERKNTYDKAIESLTTEFDNESLLKKDPYSIKQGQSTLDEYVEKMEQMFT
ELNVKPDEKLDFFMAGLDENTQNDLFLNEIDSYEKAVRRLKLKLSIEKRK
SSKSKKPFTRDREMSENKAHQSKTMGNDQLCYVCQEPGHLAINCWFKERF
FKKNITSNAKI
Run BLAST on NCBI

transcript from alignment at scaffold_462:826323..827002

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067059 ID=TCONS_00067059|Name=TCONS_00067059|organism=Clytia hemisphaerica|type=transcript|length=680bp|location=Sequence derived from alignment at scaffold_462:826323..827002 (Clytia hemisphaerica)
CAACGAGCGAAAGAATACGTATGATAAAGCCATTGAAAGTCTGACTACTG
AGTTTGACAAtgaatctcttttgaaaaaggACCCCTATTCTATCAAACAG
GGACAGTCTACGTTAGATGAATATGTTGAGAAAATGGAACAAATGTTTAC
CGAGCTGAATGTTAAACCAGATGAAAAGTTAGATTTCTTTATGGCTGGTT
TAGACGAAAACACTCAAAATGATTTGTTCCTGAACGAGATTGATTCGTAC
GAAAAAGCTGTTAGAAGACTGAAGCTGAAGTTGTCAATCGAAAAGAGAAA
ATCGTCAAAATCGAAAAAACCCTTTACGAGAGATCGAGAAATGTCCGAAA
ATAAAGCACACCAGTCCAAAACCATGGGCAATGACCAACTTTGTTACGTT
TGTCAAGAACCTGGCCATTTAGCGATTAACTGTTGGTTCAAAGAACGctt
tttcaaaaagaacatTACGAGCAAtgcaaaaatataacaaaaaaaaatga
aaacgatATAGATCCATTTTAAGAAAACTATTCGAAAGATTGGGGACCAA
TCTCCATTGTCGAGGGAGTGTTGTCATGAGGACATAGTTCtgcaatttta
ttatttatgttCGTAGTTATGGTAACCATTGAATGGAAGCTCACCTTGAG
TACGttagatagaaattttattaggAGAAA

Coding sequence (CDS) from alignment at scaffold_462:826323..827002

>TCONS_00067059 ID=TCONS_00067059|Name=TCONS_00067059|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_462:826323..827002 (Clytia hemisphaerica)
AACGAGCGAAAGAATACGTATGATAAAGCCATTGAAAGTCTGACTACTGA
GTTTGACAAtgaatctcttttgaaaaaggACCCCTATTCTATCAAACAGG
GACAGTCTACGTTAGATGAATATGTTGAGAAAATGGAACAAATGTTTACC
GAGCTGAATGTTAAACCAGATGAAAAGTTAGATTTCTTTATGGCTGGTTT
AGACGAAAACACTCAAAATGATTTGTTCCTGAACGAGATTGATTCGTACG
AAAAAGCTGTTAGAAGACTGAAGCTGAAGTTGTCAATCGAAAAGAGAAAA
TCGTCAAAATCGAAAAAACCCTTTACGAGAGATCGAGAAATGTCCGAAAA
TAAAGCACACCAGTCCAAAACCATGGGCAATGACCAACTTTGTTACGTTT
GTCAAGAACCTGGCCATTTAGCGATTAACTGTTGGTTCAAAGAACGcttt
ttcaaaaagaacatTACGAGCAAtgcaaaaatataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041898XLOC_041898Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067059-proteinTCONS_00067059-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067059-exon-scaffold_462-1491911889:826323..827002TCONS_00067059-exon-scaffold_462-1491911889:826323..827002Clytia hemisphaericaexon
TCONS_00067059-exon-scaffold_462-1510915933:826323..827002TCONS_00067059-exon-scaffold_462-1510915933:826323..827002Clytia hemisphaericaexon
TCONS_00067059-exon-scaffold_462-1575043694:826323..827002TCONS_00067059-exon-scaffold_462-1575043694:826323..827002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:826323..827002 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.341417	0.146906	0.997016	0.251734	5.46363	4.6383	10.6767	11.6989	12.0937	5.57649	10.5949	9.36254	29.9301	24.7554	23.7212	43.0779	30.4633	34.5536	2.81113	4.49226	28.0159	27.5163	29.2439	27.5963	1.71641	5.77788	7.2717	5.53736	0.975592	0.99118
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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