TCONS_00067057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067057
Unique NameTCONS_00067057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067057 ID=TCONS_00067057|Name=TCONS_00067057|organism=Clytia hemisphaerica|type=transcript|length=400bp
TTCTTGGGTATTTTCGCAAACAGATGCCAGTAACTTGGGTTGGAAGAAGG
GCCAAATATTGTTTGAAATGTAACTGtccataaaatattttcatctgtAA
TGCACAATTTTCTTCTTTGTTCTAGATAATTAAAAAGGGAAAAAGAAGTG
CAAAAAATGGAGCTTTGTATCTTACCAAATGAATTATTGAAGCTGGTGAT
ATCGTATACAGACATCCAAGATGCCAAAAACTTCTCACAAACATCGAAAC
GTATGTACCAGTTAACGCTATCAAGAATTTGGTCAAAACCATCATTTGCT
TATTTCAAAACTCCAGCTTTTCTGAAGAAGATATCTAAATTCCCGGTGAA
ACGTTTAAGTACAAAAAACTTTAGCGATTGTTCTTTAATGATGTTGCAGA
Run BLAST on NCBI

transcript from alignment at scaffold_462:813818..814217

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067057 ID=TCONS_00067057|Name=TCONS_00067057|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at scaffold_462:813818..814217 (Clytia hemisphaerica)
TCTGCAACATCATTAAAGAACAATCGCTAAAGTTTTTTGTACTTAAACGT
TTCACCGGGAATTTAGATATCTTCTTCAGAAAAGCTGGAGTTTTGAAATA
AGCAAATGATGGTTTTGACCAAATTCTTGATAGCGTTAACTGGTACATAC
GTTTCGATGTTTGTGAGAAGTTTTTGGCATCTTGGATGTCTGTATACGAT
ATCACCAGCTTCAATAATTCATTTGGTAAGATACAAAGCTCCATTTTTTG
CACTTCTTTTTCCCTTTTTAATTATCTAGAACAAAGAAGAAAATTGTGCA
TTacagatgaaaatattttatggaCAGTTACATTTCAAACAATATTTGGC
CCTTCTTCCAACCCAAGTTACTGGCATCTGTTTGCGAAAATACCCAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041896XLOC_041896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067057-exon-scaffold_462-1491911889:813818..814217TCONS_00067057-exon-scaffold_462-1491911889:813818..814217Clytia hemisphaericaexon
TCONS_00067057-exon-scaffold_462-1510915933:813818..814217TCONS_00067057-exon-scaffold_462-1510915933:813818..814217Clytia hemisphaericaexon
TCONS_00067057-exon-scaffold_462-1575043694:813818..814217TCONS_00067057-exon-scaffold_462-1575043694:813818..814217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:813818..814217 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.742989	1.26793	0.420625	0	0	0.593823	0.238808	0.670706	0.626103	0.193882	0	0.123707	0.123535	0.769752	0	0.113189	0	1.14337	0	0	0.538773	0	0	0.580874	0.598286	0.177985	0.509393	0	0.82466	0.21005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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