TCONS_00067056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067056
Unique NameTCONS_00067056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length855

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067056 ID=TCONS_00067056|Name=TCONS_00067056|organism=Clytia hemisphaerica|type=transcript|length=855bp
GATACGTCATCAATAAAGTTTTCAAGGCGAACACATTACTTTGACCAAAT
AATGATAGTTTTAGGGTCAACTAATGTATTGCAATTAGATGTTAACCACG
AAGTTGATTACATGAATGAAAGGAGAGGCCGACTTTCACTCGACCAGTTA
AAAAAGCTCAACAGTATCGTTCCTATTACCCAATTGGCAGTAGATTGTGT
TGATTTGAACAAAAACAACCTTGTTCAATTCATTAAGTTACTTAGTGAAG
ATGGCGTTAAAGATTGTCAAATTTCAATGACTTACATTACCAACAATGAT
CGCTACTTATTCACAATCCAAGACCTTGAGTTGATGAttgaacatgatat
taaagTGACTTTTATTACGAGTGACGCTTTAAGGACTGACGGATTAAGTG
AAAATCTTGGATTGTTCGCACCTGTTCTTAAGAGGATGAAACATCTTGGT
AACTTCTATTTTACTCAAGGTCCTCTTCATGAAATGGATGGACCACCTCC
GGTTCATTTGTTCACCGATATTCCAATGAACAGTATCTCGACTATTGAAT
TCCAGATGGTAAAAGGAAACATCAATAACATTGCTCACACTATCTCACAA
ATCAAATCGCTTCAAggatttgacattttttattttgatagcaATGATTA
TAAGTTGAGTCCAGTAGAACTGTCACTTTTTNTATTTTGATAGCAATGAT
TATAAGTTGAGTCCAGCAGAACTGTCACTTTTGAAAGACCTTCCCATAAC
TCATATTGACGAAGATGCACTTGATTTGACGAAAGAAAACTTGGAAGAGT
TTCGACAAATCCTGTTGACGCTGAAAGATTTTGATTGTAGGAGGCTGTTT
GAGAG
Run BLAST on NCBI

protein sequence of TCONS_00067056-protein

>TCONS_00067056-protein ID=TCONS_00067056-protein|Name=TCONS_00067056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
DTSSIKFSRRTHYFDQIMIVLGSTNVLQLDVNHEVDYMNERRGRLSLDQL
KKLNSIVPITQLAVDCVDLNKNNLVQFIKLLSEDGVKDCQISMTYITNND
RYLFTIQDLELMIEHDIKVTFITSDALRTDGLSENLGLFAPVLKRMKHLG
NFYFTQGPLHEMDGPPPVHLFTDIPMNSISTIEFQMVKGNINNIAHTISQ
IKSLQGFDIFYFDSNDYKLSPVELSLFXF
Run BLAST on NCBI

transcript from alignment at scaffold_462:811793..812647

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067056 ID=TCONS_00067056|Name=TCONS_00067056|organism=Clytia hemisphaerica|type=transcript|length=855bp|location=Sequence derived from alignment at scaffold_462:811793..812647 (Clytia hemisphaerica)
CTCTCAAACAGCCTCCTACAATCAAAATCTTTCAGCGTCAACAGGATTTG
TCGAAACTCTTCCAAGTTTTCTTTCGTCAAATCAAGTGCATCTTCGTCAA
TATGAGTTATGGGAAGGTCTTTCAAAAGTGACAGTTCTGCTGGACTCAAC
TTATAATCATTGCTATCAAAATANAAAAAGTGACAGTTCTACTGGACTCA
ACTTATAATCATtgctatcaaaataaaaaatgtcaaatccTTGAAGCGAT
TTGATTTGTGAGATAGTGTGAGCAATGTTATTGATGTTTCCTTTTACCAT
CTGGAATTCAATAGTCGAGATACTGTTCATTGGAATATCGGTGAACAAAT
GAACCGGAGGTGGTCCATCCATTTCATGAAGAGGACCTTGAGTAAAATAG
AAGTTACCAAGATGTTTCATCCTCTTAAGAACAGGTGCGAACAATCCAAG
ATTTTCACTTAATCCGTCAGTCCTTAAAGCGTCACTCGTAATAAAAGTCA
ctttaatatcatgttcaaTCATCAACTCAAGGTCTTGGATTGTGAATAAG
TAGCGATCATTGTTGGTAATGTAAGTCATTGAAATTTGACAATCTTTAAC
GCCATCTTCACTAAGTAACTTAATGAATTGAACAAGGTTGTTTTTGTTCA
AATCAACACAATCTACTGCCAATTGGGTAATAGGAACGATACTGTTGAGC
TTTTTTAACTGGTCGAGTGAAAGTCGGCCTCTCCTTTCATTCATGTAATC
AACTTCGTGGTTAACATCTAATTGCAATACATTAGTTGACCCTAAAACTA
TCATTATTTGGTCAAAGTAATGTGTTCGCCTTGAAAACTTTATTGATGAC
GTATC

Coding sequence (CDS) from alignment at scaffold_462:811793..812647

>TCONS_00067056 ID=TCONS_00067056|Name=TCONS_00067056|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_462:811793..812647 (Clytia hemisphaerica)
TCAAAATANAAAAAGTGACAGTTCTACTGGACTCAACTTATAATCATtgc
tatcaaaataaaaaatgtcaaatccTTGAAGCGATTTGATTTGTGAGATA
GTGTGAGCAATGTTATTGATGTTTCCTTTTACCATCTGGAATTCAATAGT
CGAGATACTGTTCATTGGAATATCGGTGAACAAATGAACCGGAGGTGGTC
CATCCATTTCATGAAGAGGACCTTGAGTAAAATAGAAGTTACCAAGATGT
TTCATCCTCTTAAGAACAGGTGCGAACAATCCAAGATTTTCACTTAATCC
GTCAGTCCTTAAAGCGTCACTCGTAATAAAAGTCActttaatatcatgtt
caaTCATCAACTCAAGGTCTTGGATTGTGAATAAGTAGCGATCATTGTTG
GTAATGTAAGTCATTGAAATTTGACAATCTTTAACGCCATCTTCACTAAG
TAACTTAATGAATTGAACAAGGTTGTTTTTGTTCAAATCAACACAATCTA
CTGCCAATTGGGTAATAGGAACGATACTGTTGAGCTTTTTTAACTGGTCG
AGTGAAAGTCGGCCTCTCCTTTCATTCATGTAATCAACTTCGTGGTTAAC
ATCTAATTGCAATACATTAGTTGACCCTAAAACTATCATTATTTGGTCAA
AGTAATGTGTTCGCCTTGAAAACTTTATTGATGACGTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041895XLOC_041895Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067056-exon-scaffold_462-1491911889:811793..812647TCONS_00067056-exon-scaffold_462-1491911889:811793..812647Clytia hemisphaericaexon
TCONS_00067056-exon-scaffold_462-1510915933:811793..812647TCONS_00067056-exon-scaffold_462-1510915933:811793..812647Clytia hemisphaericaexon
TCONS_00067056-exon-scaffold_462-1575043694:811793..812647TCONS_00067056-exon-scaffold_462-1575043694:811793..812647Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067056-proteinTCONS_00067056-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:811793..812647 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.659029	0.374883	0.55964	0.54752	0.222184	0.117049	0.776679	0.330508	0.462793	0.40127	0.0556404	0	0.182625	0.0379315	0.0311849	0.267729	0.412276	0.760625	0	0	0.849583	0.699294	1.00751	0.629729	0.117928	0.263121	0.15061	0.32147	0.792427	1.49051
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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