TCONS_00067055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067055
Unique NameTCONS_00067055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067055 ID=TCONS_00067055|Name=TCONS_00067055|organism=Clytia hemisphaerica|type=transcript|length=528bp
ATGATTTAATTGCTAGTtcagaaatatttcttgaatttaattcataaaaa
ttggaaaaattgaaattacaaGTCTCGTAAATTTATTTAGTCTAATAAAA
CTAAAGATAACCGtacgaaacattttttttgtaaaacgcGCCAAAGGCAA
TGAAGATGAAAGAAGCTCTTCAGTCTTGATGTTTTctgggaaaatgaaaa
gaatttacAGAAGGTGGAAAACTAGATTCAAATTCTaataaatgaaatta
ttttttatagctAAAATAAAAGAGATAATAATCATGCTGCTAAAATATAT
TGctgaaaagaaatatgattccaaaatttttaaattaaatcgaaaaaatt
aaaattcatcaCAGTCAAATTCAAATTAACAGGAATGAATTGTTGTTTAC
AGTATTCAAATTTTATAGTTAATCAAGATCATAAAAAAAGTCAATAGTTT
TTTCCTAGCTTTTAGCTGAGGAGGTAGCCGGTTCGATTCCTGCCACTTTC
TATCAAGTGTAGCTCATTGGATAGAGCA
Run BLAST on NCBI

transcript from alignment at scaffold_462:763966..764493

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067055 ID=TCONS_00067055|Name=TCONS_00067055|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at scaffold_462:763966..764493 (Clytia hemisphaerica)
TGCTCTATCCAATGAGCTACACTTGATAGAAAGTGGCAGGAATCGAACCG
GCTACCTCCTCAGCTAAAAGCTAGGAAAAAACTATTGACTTTTTTTATGA
TCTTGATTAACTATAAAATTTGAATACTGTAAACAACAATTCATTCCTGT
TAATTTGAATTTGACTGtgatgaattttaattttttcgatttaatttaaa
aattttggaatcatatttcttttcagCAATATATTTTAGCAGCATGATTA
TTATCTCTTTTATTTTagctataaaaaataatttcatttattAGAATTTG
AATCTAGTTTTCCACCTTCTgtaaattcttttcattttcccagAAAACAT
CAAGACTGAAGAGCTTCTTTCATCTTCATTGCCTTTGGCgcgttttacaa
aaaaaatgtttcgtaCGGTTATCTTTAGTTTTATTAGACTAAATAAATTT
ACGAGACttgtaatttcaatttttccaatttttatgaattaaattcaaga
aatatttctgaACTAGCAATTAAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041894XLOC_041894Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067055-exon-scaffold_462-1491911889:763966..764493TCONS_00067055-exon-scaffold_462-1491911889:763966..764493Clytia hemisphaericaexon
TCONS_00067055-exon-scaffold_462-1510915933:763966..764493TCONS_00067055-exon-scaffold_462-1510915933:763966..764493Clytia hemisphaericaexon
TCONS_00067055-exon-scaffold_462-1575043694:763966..764493TCONS_00067055-exon-scaffold_462-1575043694:763966..764493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:763966..764493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.778508	0.759168	0.503696	0.369591	0	0.474066	1.28687	1.87405	1.68694	1.97347	3.38029	1.92579	1.18345	1.30584	0.0631518	0.0677716	0	0.0855736	0	0.247427	0.107529	0	0	0	0.477629	0.426272	0.152499	0	0	0.125766
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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