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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067053 ID=TCONS_00067053|Name=TCONS_00067053|organism=Clytia hemisphaerica|type=transcript|length=2440bp
tgttttttattCTCTCTCTCAGAATTATTGCAAACAGAAAAAAAAGTGTG
CTCACACAAGATATCTTTtgcaacaaaagaaaaaaatggtttCTATAAAA
ATGATGTTGATACTCAGCGTAATTGCTATTTTAACTTCAATATTTGGTTT
CACGAATACAATATTAACGACCATGACATTGCTATTGATCACAAATTACC
AGAGGTTACCAGTAATGATTTATTGCTTGCCAAGAGAATTGAAATTTCTG
TCCAAAATCATTCGGATGGTGATTAACTTGAAGAAACTACAAAGAAAACC
TTTGTGTGAATTATTTGCCAACATTGCCAAAAAGTATCCTGACAAAATTG
CCATCATTGATGCTGAAACTGACCAGAGCTTAACATTCAATGAATTCTTA
AAGCTCACTCACAAAATTGCTAATTTCTTTCAAGCAAATGGTTTTACTAA
AGGAGACAATGTTGCAATAATGTTGCCTAACCAAATCGAGTATATTCCAA
TGTATCTTGGCTTATCAAGTATTGGTGTTAGCGCAGCATTCATAAACATC
AACCAAGTGGGTGAAACATTAAAACATTCCTTAAATGTTATGGAATTTAA
AGCCATCATTTACCATACTGATTTGGAAGAAACCTTGCGTAATTTAAACC
TTGTTGACAATGACTcaggtaaattattttttacttttggtGAAAAATCG
AATAGTAAAAATAATCTTGAATTGCTGCTAAAGAATGTCTCTTCTGACCT
TCCTCAAATAGACTATGGCATTTCTCCTGACTATCCAGTAGCCTATGTTT
TCACCTCTGGCACAACGGGACATCCAAAGCCAGCAGTGATGGCACGCAAG
AAGTTCACTGCAGGTTATCTCATCTTCAGATACTTAACCAGTATTGACAC
CAATGATATTGTTTACAACACATTACCAATGTATCATACCAGCGGTAGTT
TAATATTCTTTGCTGGAACCATCCTTTGTGGCTCTACTATGGTGTTTAGA
AAGAAGTTCAGCGCATCAAAGTTCCTTGAAGATTGTAGGAAATACAATGT
AACCTATGTTGGTTATATTGGCGAAATGATGAGATATCTTTTAGCGCAAC
CAGAGAAAGAGATTGATCGCCAGCACCATATTAAAAAGATTGTAGGTAAT
GGTTTACGAAGATCCTTGTTCACTCAGCTCAGATCTAGATTCAATATTGA
GCACATTTATGAGTTTTATGGTGCAACTGAATCTAACGTTGGTTTCATTA
ACGATGATAATACTGATGGTGCTGTTGGTTTTCTCTTCAAATGTTTTCCA
TTTTTGAATCTAAAGACATTGgttaaaattgatcaaaatacTGGTGAATT
GATCAGAGACGATAATGGATTCTGTATTGAGTGTGAGCCTGGTGAGCCTG
GCACTATGGTTGGACTAATCAATAATAATCAACCGTATTATGGATATGTA
CAAAAGAATGATTCCGTCAAGAAGGTGGCCCGTAACGTTTTTCAGTCAGG
TGATAGTTATTTTATGACTGGAGATTTACTTATGACTGATCAATTCGGAT
ATCTATATTTCTTAGATCGTTTAGGAGACACATTTCGATGGAAAGGTGAA
AATGTATCAACGGTTGAAATCGAGAATATTGTTTCGTCGTCGTTTGAAAG
TTATACCCATTGCATTGTATACGGTCAAGCTATCCCTGGTTACGAAGGCA
GAGCTGGTATGGTGTACATTAATGATCCATCTATAAATTTAAGAATGATC
AATACAGTTTTCAATGATAATTGGAAACACAATTTACCATCTTATGCGCT
ACCTGTTTTCGTTCGTGTTGGCAATGAAATGCAAGTGACAAGCACTTTTA
AATATCAAAAAGAACAATTGAAGAAAGAAGGCTTTGACTTGGAATATTTA
ATGGATGATgagaaaatattctttttgtttggAGATAGTTATGTGGAGTT
TGATGAGTTATTGTTTCAAGATTTAAAGGATGGGAAAATTATACTGTAAA
CCATTTAGTTAGGTGACAGAACTAAAACTTTATTTGGAGGAGATATTcaa
gattgtttgatttggaCACAAAATCTCACCTATTATAAGACTTCCAACAT
GTATATTCACTTATAGTCATATCGAtgtgcagcagaatcattgTCATAGG
ACATTAGAACAATTTCACAAAACTGATGTCAAATTCACCCCCAGTGGAAA
GGCTCTCTTAAGATTTTCTTTATTGGAGAAACCTAAAGTCTCATCCCATT
TTGAAGATCTCATCTCCTATGAGAAAACAGTACAAAACAGTTTTGGAACC
ACTATTGGATTTTGAGTTTTCAGCAATATAatttcccattgggattttaa
gATTCTTTATTATAATCCTAATGGCTAGAACTTCATATTTGGTTATAAAG
TATAATCTGAACTGAAAAGAAACGAAATTATTGATCATTN Run BLAST on NCBI protein sequence of TCONS_00067053-protein >TCONS_00067053-protein ID=TCONS_00067053-protein|Name=TCONS_00067053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp
VFYSLSQNYCKQKKKCAHTRYLLQQKKKMVSIKMMLILSVIAILTSIFGF
TNTILTTMTLLLITNYQRLPVMIYCLPRELKFLSKIIRMVINLKKLQRKP
LCELFANIAKKYPDKIAIIDAETDQSLTFNEFLKLTHKIANFFQANGFTK
GDNVAIMLPNQIEYIPMYLGLSSIGVSAAFININQVGETLKHSLNVMEFK
AIIYHTDLEETLRNLNLVDNDSGKLFFTFGEKSNSKNNLELLLKNVSSDL
PQIDYGISPDYPVAYVFTSGTTGHPKPAVMARKKFTAGYLIFRYLTSIDT
NDIVYNTLPMYHTSGSLIFFAGTILCGSTMVFRKKFSASKFLEDCRKYNV
TYVGYIGEMMRYLLAQPEKEIDRQHHIKKIVGNGLRRSLFTQLRSRFNIE
HIYEFYGATESNVGFINDDNTDGAVGFLFKCFPFLNLKTLVKIDQNTGEL
IRDDNGFCIECEPGEPGTMVGLINNNQPYYGYVQKNDSVKKVARNVFQSG
DSYFMTGDLLMTDQFGYLYFLDRLGDTFRWKGENVSTVEIENIVSSSFES
YTHCIVYGQAIPGYEGRAGMVYINDPSINLRMINTVFNDNWKHNLPSYAL
PVFVRVGNEMQVTSTFKYQKEQLKKEGFDLEYLMDDEKIFFLFGDSYVEF
DELLFQDLKDGKIIL Run BLAST on NCBI transcript from alignment at scaffold_462:745999..748438 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067053 ID=TCONS_00067053|Name=TCONS_00067053|organism=Clytia hemisphaerica|type=transcript|length=2440bp|location=Sequence derived from alignment at scaffold_462:745999..748438 (Clytia hemisphaerica)
NAATGATCAATAATTTCGTTTCTTTTCAGTTCAGATTATACTTTATAACC
AAATATGAAGTTCTAGCCATTAGGATTATAATAAAGAATcttaaaatccc
aatgggaaatTATATTGCTGAAAACTCAAAATCCAATAGTGGTTCCAAAA
CTGTTTTGTACTGTTTTCTCATAGGAGATGAGATCTTCAAAATGGGATGA
GACTTTAGGTTTCTCCAATAAAGAAAATCTTAAGAGAGCCTTTCCACTGG
GGGTGAATTTGACATCAGTTTTGTGAAATTGTTCTAATGTCCTATGAcaa
tgattctgctgcacaTCGATATGACTATAAGTGAATATACATGTTGGAAG
TCTTATAATAGGTGAGATTTTGTGtccaaatcaaacaatcttgAATATCT
CCTCCAAATAAAGTTTTAGTTCTGTCACCTAACTAAATGGTTTACAGTAT
AATTTTCCCATCCTTTAAATCTTGAAACAATAACTCATCAAACTCCACAT
AACTATCTccaaacaaaaagaatattttctcATCATCCATTAAATATTCC
AAGTCAAAGCCTTCTTTCTTCAATTGTTCTTTTTGATATTTAAAAGTGCT
TGTCACTTGCATTTCATTGCCAACACGAACGAAAACAGGTAGCGCATAAG
ATGGTAAATTGTGTTTCCAATTATCATTGAAAACTGTATTGATCATTCTT
AAATTTATAGATGGATCATTAATGTACACCATACCAGCTCTGCCTTCGTA
ACCAGGGATAGCTTGACCGTATACAATGCAATGGGTATAACTTTCAAACG
ACGACGAAACAATATTCTCGATTTCAACCGTTGATACATTTTCACCTTTC
CATCGAAATGTGTCTCCTAAACGATCTAAGAAATATAGATATCCGAATTG
ATCAGTCATAAGTAAATCTCCAGTCATAAAATAACTATCACCTGACTGAA
AAACGTTACGGGCCACCTTCTTGACGGAATCATTCTTTTGTACATATCCA
TAATACGGTTGATTATTATTGATTAGTCCAACCATAGTGCCAGGCTCACC
AGGCTCACACTCAATACAGAATCCATTATCGTCTCTGATCAATTCACCAg
tattttgatcaattttaacCAATGTCTTTAGATTCAAAAATGGAAAACAT
TTGAAGAGAAAACCAACAGCACCATCAGTATTATCATCGTTAATGAAACC
AACGTTAGATTCAGTTGCACCATAAAACTCATAAATGTGCTCAATATTGA
ATCTAGATCTGAGCTGAGTGAACAAGGATCTTCGTAAACCATTACCTACA
ATCTTTTTAATATGGTGCTGGCGATCAATCTCTTTCTCTGGTTGCGCTAA
AAGATATCTCATCATTTCGCCAATATAACCAACATAGGTTACATTGTATT
TCCTACAATCTTCAAGGAACTTTGATGCGCTGAACTTCTTTCTAAACACC
ATAGTAGAGCCACAAAGGATGGTTCCAGCAAAGAATATTAAACTACCGCT
GGTATGATACATTGGTAATGTGTTGTAAACAATATCATTGGTGTCAATAC
TGGTTAAGTATCTGAAGATGAGATAACCTGCAGTGAACTTCTTGCGTGCC
ATCACTGCTGGCTTTGGATGTCCCGTTGTGCCAGAGGTGAAAACATAGGC
TACTGGATAGTCAGGAGAAATGCCATAGTCTATTTGAGGAAGGTCAGAAG
AGACATTCTTTAGCAGCAATTCAAGATTATTTTTACTATTCGATTTTTCa
ccaaaagtaaaaaataatttacctgAGTCATTGTCAACAAGGTTTAAATT
ACGCAAGGTTTCTTCCAAATCAGTATGGTAAATGATGGCTTTAAATTCCA
TAACATTTAAGGAATGTTTTAATGTTTCACCCACTTGGTTGATGTTTATG
AATGCTGCGCTAACACCAATACTTGATAAGCCAAGATACATTGGAATATA
CTCGATTTGGTTAGGCAACATTATTGCAACATTGTCTCCTTTAGTAAAAC
CATTTGCTTGAAAGAAATTAGCAATTTTGTGAGTGAGCTTTAAGAATTCA
TTGAATGTTAAGCTCTGGTCAGTTTCAGCATCAATGATGGCAATTTTGTC
AGGATACTTTTTGGCAATGTTGGCAAATAATTCACACAAAGGTTTTCTTT
GTAGTTTCTTCAAGTTAATCACCATCCGAATGATTTTGGACAGAAATTTC
AATTCTCTTGGCAAGCAATAAATCATTACTGGTAACCTCTGGTAATTTGT
GATCAATAGCAATGTCATGGTCGTTAATATTGTATTCGTGAAACCAAATA
TTGAAGTTAAAATAGCAATTACGCTGAGTATCAACATCATTTTTATAGaa
accatttttttcttttgttgcaAAAGATATCTTGTGTGAGCACACTTTTT
TTTCTGTTTGCAATAATTCTGAGAGAGAGaataaaaaaca Coding sequence (CDS) from alignment at scaffold_462:745999..748438 >TCONS_00067053 ID=TCONS_00067053|Name=TCONS_00067053|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at scaffold_462:745999..748438 (Clytia hemisphaerica)
TTACAGTATAATTTTCCCATCCTTTAAATCTTGAAACAATAACTCATCAA
ACTCCACATAACTATCTccaaacaaaaagaatattttctcATCATCCATT
AAATATTCCAAGTCAAAGCCTTCTTTCTTCAATTGTTCTTTTTGATATTT
AAAAGTGCTTGTCACTTGCATTTCATTGCCAACACGAACGAAAACAGGTA
GCGCATAAGATGGTAAATTGTGTTTCCAATTATCATTGAAAACTGTATTG
ATCATTCTTAAATTTATAGATGGATCATTAATGTACACCATACCAGCTCT
GCCTTCGTAACCAGGGATAGCTTGACCGTATACAATGCAATGGGTATAAC
TTTCAAACGACGACGAAACAATATTCTCGATTTCAACCGTTGATACATTT
TCACCTTTCCATCGAAATGTGTCTCCTAAACGATCTAAGAAATATAGATA
TCCGAATTGATCAGTCATAAGTAAATCTCCAGTCATAAAATAACTATCAC
CTGACTGAAAAACGTTACGGGCCACCTTCTTGACGGAATCATTCTTTTGT
ACATATCCATAATACGGTTGATTATTATTGATTAGTCCAACCATAGTGCC
AGGCTCACCAGGCTCACACTCAATACAGAATCCATTATCGTCTCTGATCA
ATTCACCAgtattttgatcaattttaacCAATGTCTTTAGATTCAAAAAT
GGAAAACATTTGAAGAGAAAACCAACAGCACCATCAGTATTATCATCGTT
AATGAAACCAACGTTAGATTCAGTTGCACCATAAAACTCATAAATGTGCT
CAATATTGAATCTAGATCTGAGCTGAGTGAACAAGGATCTTCGTAAACCA
TTACCTACAATCTTTTTAATATGGTGCTGGCGATCAATCTCTTTCTCTGG
TTGCGCTAAAAGATATCTCATCATTTCGCCAATATAACCAACATAGGTTA
CATTGTATTTCCTACAATCTTCAAGGAACTTTGATGCGCTGAACTTCTTT
CTAAACACCATAGTAGAGCCACAAAGGATGGTTCCAGCAAAGAATATTAA
ACTACCGCTGGTATGATACATTGGTAATGTGTTGTAAACAATATCATTGG
TGTCAATACTGGTTAAGTATCTGAAGATGAGATAACCTGCAGTGAACTTC
TTGCGTGCCATCACTGCTGGCTTTGGATGTCCCGTTGTGCCAGAGGTGAA
AACATAGGCTACTGGATAGTCAGGAGAAATGCCATAGTCTATTTGAGGAA
GGTCAGAAGAGACATTCTTTAGCAGCAATTCAAGATTATTTTTACTATTC
GATTTTTCaccaaaagtaaaaaataatttacctgAGTCATTGTCAACAAG
GTTTAAATTACGCAAGGTTTCTTCCAAATCAGTATGGTAAATGATGGCTT
TAAATTCCATAACATTTAAGGAATGTTTTAATGTTTCACCCACTTGGTTG
ATGTTTATGAATGCTGCGCTAACACCAATACTTGATAAGCCAAGATACAT
TGGAATATACTCGATTTGGTTAGGCAACATTATTGCAACATTGTCTCCTT
TAGTAAAACCATTTGCTTGAAAGAAATTAGCAATTTTGTGAGTGAGCTTT
AAGAATTCATTGAATGTTAAGCTCTGGTCAGTTTCAGCATCAATGATGGC
AATTTTGTCAGGATACTTTTTGGCAATGTTGGCAAATAATTCACACAAAG
GTTTTCTTTGTAGTTTCTTCAAGTTAATCACCATCCGAATGATTTTGGAC
AGAAATTTCAATTCTCTTGGCAAGCAATAAATCATTACTGGTAACCTCTG
GTAATTTGTGATCAATAGCAATGTCATGGTCGTTAATATTGTATTCGTGA
AACCAAATATTGAAGTTAAAATAGCAATTACGCTGAGTATCAACATCATT
TTTATAGaaaccatttttttcttttgttgcaAAAGATATCTTGTGTGAGC
ACACTTTTTTTTCTGTTTGCAATAATTCTGAGAGAGAGaataaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067053-exon-scaffold_462-1491911889:745999..748438 | TCONS_00067053-exon-scaffold_462-1491911889:745999..748438 | Clytia hemisphaerica | exon |
| TCONS_00067053-exon-scaffold_462-1510915933:745999..748438 | TCONS_00067053-exon-scaffold_462-1510915933:745999..748438 | Clytia hemisphaerica | exon |
| TCONS_00067053-exon-scaffold_462-1575043694:745999..748438 | TCONS_00067053-exon-scaffold_462-1575043694:745999..748438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_462 | supercontig | scaffold_462:745999..748438 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00067053 vs. Swiss-Prot (Human)
Match: S27A4 (Long-chain fatty acid transport protein 4 OS=Homo sapiens GN=SLC27A4 PE=1 SV=1) HSP 1 Score: 419.083 bits (1076), Expect = 6.256e-135 Identity = 222/575 (38.61%), Postives = 339/575 (58.96%), Query Frame = 2
Query: 290 QRKPLCELFANIAKKYPDKIAIIDAETDQSLTFNEFLKLTHKIANFFQANGFTKGDNVAIMLPNQIEYIPMYLGLSSIGVSAAFININQVGETLKHSLNVMEFKAIIYHTDLEETLRNLNLVDNDSGKLFFTFGXXXXXXXXXXXXXXXXXXDLPQIDYGISPDY----PVAYVFTSGTTGHPKPAVMARKKFTAGYLIFRYLTSIDTNDIVYNTLPMYHTSGSLIFFAGTILCGSTMVFRKKFSASKFLEDCRKYNVTYVGYIGEMMRYLLAQPEKEIDRQHHIKKIVGNGLRRSLFTQLRSRFNIEHIYEFYGATESNVGFINDDNTDGAVGFLFKCFPFLNLKTLVKIDQNTGELIRDDNGFCIECEPGEPGTMVGLINNNQP---YYGYVQKNDSVKKVARNVFQSGDSYFMTGDLLMTDQFGYLYFLDRLGDTFRWKGENVSTVEIENIVSSSFESYTHCIVYGQAIPGYEGRAGMVYINDPSINLRMINTVFNDNWKHNLPSYALPVFVRVGNEMQVTSTFKYQKEQLKKEGFDLEYLMDDEKIFFLFGDS--YVEFDELLFQDLKDGK 1987
+R+ + LFA+ +++PDK A+I TD TF + + + +ANF QA G GD AI + N+ E++ ++LG++ +GV AA IN N + L H L +A+++ +++ + ++ + S LF + + + L + D P+ PD + Y++TSGTTG PK A++ ++ + Y + NDIVY+ LP+YH++G+++ +L G T+V RKKFSAS+F +DC KYN T V YIGE+ RYLL QP +E + QH ++ +GNGLR+S++T SRF+I + EFYGATE N N D+ GA GF + F+ LV+++++T ELIR +G CI C+PGEPG +VG I P + GY+ + + KK+A++VF+ GD ++TGD+L+ D+ GYLYF DR GDTFRWKGENVST E+E +S + VYG +PG EGRAGM + P+ N + F + LP YA P+F+R+ E+ T T+K+QK +L+KEGFD + D +F+L YV D+ + ++ G+
Sbjct: 72 ERRTVPILFASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASGDVAAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASAICEVHASLDPSLSLFCSGSWEPGAVPPSTEHLDPLLKDAPK-HLPSCPDKGFTDKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALGNGLRQSIWTNFSSRFHIPQVAEFYGATECNCSLGNFDSQVGACGFNSRILSFVYPIRLVRVNEDTMELIRGPDGVCIPCQPGEPGQLVGRIIQKDPLRRFDGYLNQGANNKKIAKDVFKKGDQAYLTGDVLVMDELGYLYFRDRTGDTFRWKGENVSTTEVEGTLSRLLD-MADVAVYGVEVPGTEGRAGMAAVASPTGNCDLER--FAQVLEKELPLYARPIFLRLLPELHKTGTYKFQKTELRKEGFDPAIVKD--PLFYLDAQKGRYVPLDQEAYSRIQAGE 640
The following BLAST results are available for this feature:
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