TCONS_00067047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067047
Unique NameTCONS_00067047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067047 ID=TCONS_00067047|Name=TCONS_00067047|organism=Clytia hemisphaerica|type=transcript|length=1345bp
CATCAGTACAGCACACAGCTAGAGTGAATCACAGACAGCAAGTATATCTT
GAGAAATCAACAGAATTCACCTGTCTGACAACTGATAACAATCGAGTCAA
ATTTATGTCAGCACAACAAATTAACTGATCACTGAAGAAGGGCTCAGGTC
AAGAAAGTGAGGACAATTCAAATTTGTAGAAGGAAATTAACTGATCGATA
AAGAAGAACTCGGGCCAAGAAAGTGAACTCAGATTCATCAAACGATGGCT
CTTCTGATTTTTGCTGTCATTCTAACCAGTGTGGTCGTTCTCTCCATACC
TTTGAACAGTCTCATCATTATCGTATTCCTCAAAACACGTCAATCGCGAC
ACGACGCTCATCGAGATTTCCTAATCCTCAGTTTAGCAGTCAGTGATATT
TTACAAGCACTTTTCGGATACCCGGCTGAAATCCGGTCACTTTTTAACGG
TGAGTTGCAAGATGCAGAATCAGCTGCTtgcaaatttacagctttcgcCG
TTACCTTTTTCGGCCTGACATCAATCAATCATTTAGTTTTCATGATGATC
AAACGTGCCTGTATCGTCCTGTATCCGTTTGGTACCTTGACAACTGAAAA
GTTTTATTCATACGTCTCCGTGACGTTCTCTTGGTTGATCAGCTTTGTAT
TCGCTCTCATTCCTTGGGTGAGCTGGTCGGGCTACGGCGGAACCAAGGAC
CGTTGCTCGATTAATTGGAAAGACGGATCGCTACACAATCGTATTTATTT
GTATATTCTCTTTGGATGTCAATTCGTTCTCCCGTTCCTCATCATCATAA
TTTgctatttcattattttgaaagTCCTTCGAAAGAGCGTAGATAGCCAA
CGATCCAGAAACGCATCCTTACctaaagaaattcaagaaaaattaaagaa
aaatgaatcGGAACGAAAAGCTGTCAGTATGGTCgttctgatgacgtcag
catatcTAATAGCCTGGACCCCATACGCTATTATCTCCCTAATGACCATA
AACATGGGTGACGATTTTATTTCCCAGAATGCTGTTCTTTATATCTCCTT
CCTAGCCAAGTCTTCAACTCTCTGTAACCCAGTAATTTATGCTATTTATT
CGAACAAAGAATATCGTATGCGCATGATCAGAAGTTACAACAAATGGAGA
AGCAGTAATATCATTTCGTCTTCTTCTAATTCTAAAGAAGATGGCGCGTC
ATGCGCTGGTGGACAATGTGCCGAAAAGTTCGATTCTTCAAGTTCTTCAA
CTGGTTGGACTTCAGTTCAATTTGCTGATATCTATCGTCCATCAAAGATA
TCTACTGCCAACGTCGAAGGTGTATAAGACTGGTGCTTCGTATAT
Run BLAST on NCBI

protein sequence of TCONS_00067047-protein

>TCONS_00067047-protein ID=TCONS_00067047-protein|Name=TCONS_00067047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MALLIFAVILTSVVVLSIPLNSLIIIVFLKTRQSRHDAHRDFLILSLAVS
DILQALFGYPAEIRSLFNGELQDAESAACKFTAFAVTFFGLTSINHLVFM
MIKRACIVLYPFGTLTTEKFYSYVSVTFSWLISFVFALIPWVSWSGYGGT
KDRCSINWKDGSLHNRIYLYILFGCQFVLPFLIIIICYFIILKVLRKSVD
SQRSRNASLPKEIQEKLKKNESERKAVSMVVLMTSAYLIAWTPYAIISLM
TINMGDDFISQNAVLYISFLAKSSTLCNPVIYAIYSNKEYRMRMIRSYNK
WRSSNIISSSSNSKEDGASCAGGQCAEKFDSSSSSTGWTSVQFADIYRPS
KISTANVEGV
Run BLAST on NCBI

transcript from alignment at scaffold_462:660226..661570

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067047 ID=TCONS_00067047|Name=TCONS_00067047|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at scaffold_462:660226..661570 (Clytia hemisphaerica)
ATATACGAAGCACCAGTCTTATACACCTTCGACGTTGGCAGTAGATATCT
TTGATGGACGATAGATATCAGCAAATTGAACTGAAGTCCAACCAGTTGAA
GAACTTGAAGAATCGAACTTTTCGGCACATTGTCCACCAGCGCATGACGC
GCCATCTTCTTTAGAATTAGAAGAAGACGAAATGATATTACTGCTTCTCC
ATTTGTTGTAACTTCTGATCATGCGCATACGATATTCTTTGTTCGAATAA
ATAGCATAAATTACTGGGTTACAGAGAGTTGAAGACTTGGCTAGGAAGGA
GATATAAAGAACAGCATTCTGGGAAATAAAATCGTCACCCATGTTTATGG
TCATTAGGGAGATAATAGCGTATGGGGTCCAGGCTATTAgatatgctgac
gtcatcagaacGACCATACTGACAGCTTTTCGTTCCgattcatttttctt
taatttttcttgaatttctttagGTAAGGATGCGTTTCTGGATCGTTGGC
TATCTACGCTCTTTCGAAGGActttcaaaataatgaaatagcAAATTATG
ATGATGAGGAACGGGAGAACGAATTGACATCCAAAGAGAATATACAAATA
AATACGATTGTGTAGCGATCCGTCTTTCCAATTAATCGAGCAACGGTCCT
TGGTTCCGCCGTAGCCCGACCAGCTCACCCAAGGAATGAGAGCGAATACA
AAGCTGATCAACCAAGAGAACGTCACGGAGACGTATGAATAAAACTTTTC
AGTTGTCAAGGTACCAAACGGATACAGGACGATACAGGCACGTTTGATCA
TCATGAAAACTAAATGATTGATTGATGTCAGGCCGAAAAAGGTAACGgcg
aaagctgtaaatttgcaAGCAGCTGATTCTGCATCTTGCAACTCACCGTT
AAAAAGTGACCGGATTTCAGCCGGGTATCCGAAAAGTGCTTGTAAAATAT
CACTGACTGCTAAACTGAGGATTAGGAAATCTCGATGAGCGTCGTGTCGC
GATTGACGTGTTTTGAGGAATACGATAATGATGAGACTGTTCAAAGGTAT
GGAGAGAACGACCACACTGGTTAGAATGACAGCAAAAATCAGAAGAGCCA
TCGTTTGATGAATCTGAGTTCACTTTCTTGGCCCGAGTTCTTCTTTATCG
ATCAGTTAATTTCCTTCTACAAATTTGAATTGTCCTCACTTTCTTGACCT
GAGCCCTTCTTCAGTGATCAGTTAATTTGTTGTGCTGACATAAATTTGAC
TCGATTGTTATCAGTTGTCAGACAGGTGAATTCTGTTGATTTCTCAAGAT
ATACTTGCTGTCTGTGATTCACTCTAGCTGTGTGCTGTACTGATG

Coding sequence (CDS) from alignment at scaffold_462:660226..661570

>TCONS_00067047 ID=TCONS_00067047|Name=TCONS_00067047|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at scaffold_462:660226..661570 (Clytia hemisphaerica)
TTATACACCTTCGACGTTGGCAGTAGATATCTTTGATGGACGATAGATAT
CAGCAAATTGAACTGAAGTCCAACCAGTTGAAGAACTTGAAGAATCGAAC
TTTTCGGCACATTGTCCACCAGCGCATGACGCGCCATCTTCTTTAGAATT
AGAAGAAGACGAAATGATATTACTGCTTCTCCATTTGTTGTAACTTCTGA
TCATGCGCATACGATATTCTTTGTTCGAATAAATAGCATAAATTACTGGG
TTACAGAGAGTTGAAGACTTGGCTAGGAAGGAGATATAAAGAACAGCATT
CTGGGAAATAAAATCGTCACCCATGTTTATGGTCATTAGGGAGATAATAG
CGTATGGGGTCCAGGCTATTAgatatgctgacgtcatcagaacGACCATA
CTGACAGCTTTTCGTTCCgattcatttttctttaatttttcttgaatttc
tttagGTAAGGATGCGTTTCTGGATCGTTGGCTATCTACGCTCTTTCGAA
GGActttcaaaataatgaaatagcAAATTATGATGATGAGGAACGGGAGA
ACGAATTGACATCCAAAGAGAATATACAAATAAATACGATTGTGTAGCGA
TCCGTCTTTCCAATTAATCGAGCAACGGTCCTTGGTTCCGCCGTAGCCCG
ACCAGCTCACCCAAGGAATGAGAGCGAATACAAAGCTGATCAACCAAGAG
AACGTCACGGAGACGTATGAATAAAACTTTTCAGTTGTCAAGGTACCAAA
CGGATACAGGACGATACAGGCACGTTTGATCATCATGAAAACTAAATGAT
TGATTGATGTCAGGCCGAAAAAGGTAACGgcgaaagctgtaaatttgcaA
GCAGCTGATTCTGCATCTTGCAACTCACCGTTAAAAAGTGACCGGATTTC
AGCCGGGTATCCGAAAAGTGCTTGTAAAATATCACTGACTGCTAAACTGA
GGATTAGGAAATCTCGATGAGCGTCGTGTCGCGATTGACGTGTTTTGAGG
AATACGATAATGATGAGACTGTTCAAAGGTATGGAGAGAACGACCACACT
GGTTAGAATGACAGCAAAAATCAGAAGAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041886XLOC_041886Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067047-proteinTCONS_00067047-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067047-exon-scaffold_462-1491911889:660226..661570TCONS_00067047-exon-scaffold_462-1491911889:660226..661570Clytia hemisphaericaexon
TCONS_00067047-exon-scaffold_462-1510915933:660226..661570TCONS_00067047-exon-scaffold_462-1510915933:660226..661570Clytia hemisphaericaexon
TCONS_00067047-exon-scaffold_462-1575043694:660226..661570TCONS_00067047-exon-scaffold_462-1575043694:660226..661570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:660226..661570 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0304546	0.0353607	0.207569	0	0.0332806	0.120455	0.0375895	0.0263173	0.0651964	0.0316406	0.0207993	0	0	0.0354673	0.0190309	0.140667	0.0961196	0	0	0.422735	0.0883693	0.179041	0.94409	0.201184	0.508731	0	0	0.0346633	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00067047 vs. Swiss-Prot (Human)
Match: OPSD (Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.075e-19
Identity = 76/294 (25.85%), Postives = 143/294 (48.64%), Query Frame = 2 
Query:  281 VVVLSIPLNSLIIIVFLKTRQSRHDAHRDFLILSLAVSDILQALFGYPAEIRSLFNGELQDAESAACKFTAFAVTFFGLTSINHLVFMMIKRACIVLYPFGTLTTEKFYSYVSVTFSWLISFVFALIPWVSWSGY--GGTKDRCSINWK--DGSLHNRIYLYILFGCQFVLPXXXXXXXXXXXXKVLRKSVDSQRSRNASLPKEIQEKLKKNESERKAVSMVVLMTSAYLIAWTPYAIISLMTI-----NMGDDFISQNAVLYISFLAKSSTLCNPVIYAIYSNKEYRMRMIRS 1135
            ++VL  P+N L + V ++ ++ R     ++++L+LAV+D+   L G+ + + +  +G      +  C    F  T  G  ++  LV + I+R  +V  P       + ++ + V F+W+++   A  P   WS Y   G +  C I++      ++N  ++  +F   F +P +II  CY  ++  ++++   Q           QE     ++E++   MV++M  A+LI W PYA ++         N G  F++  A     F AKS+ + NPVIY I  NK++R  M+ +
Sbjct:   47 LIVLGFPINFLTLYVTVQHKKLRTP--LNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTG-CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQ-----------QESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPA-----FFAKSAAIYNPVIY-IMMNKQFRNCMLTT 320
The following BLAST results are available for this feature:
BLAST of TCONS_00067047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OPSD1.075e-1925.85Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1[more]
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