Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00067047-protein ID=TCONS_00067047-protein|Name=TCONS_00067047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0007186 G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
Term Definition
GO:0004930 G-protein coupled receptor activity
Vocabulary: Cellular Component
Term Definition
GO:0016021 integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0007186 G-protein coupled receptor signaling pathway
cellular_component
GO:0016021 integral component of membrane
molecular_function
GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 Score = 20.95 Score = 29.96 Score = 17.75 Score = 26.87 Score = 22.69 Score = 24.92 Expect = 1.5E-33 / Score = 116.1 Expect = 4.8E-57 / Score = 192.6 Score = Score = Score = 32.749 Sequence PR00237 PF00001 G3DSA:1.20.1070.10 mobidb-lite SSF81321 PS50262
IPR Term IPR Description Source Source Term Source Description Alignment
IPR000276 G protein-coupled receptor, rhodopsin-like PRINTS PR00237 GPCRRHODOPSN coord: 5..29 IPR000276 G protein-coupled receptor, rhodopsin-like PFAM PF00001 7tm_1 coord: 21..282 None No IPR available GENE3D 1.20.1070.10 coord: 1..321 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 308..337 None No IPR available SUPERFAMILY 81321 Family A G protein-coupled receptor-like coord: 4..311 IPR017452 GPCR, rhodopsin-like, 7TM PROSITE PS50262 G_PROTEIN_RECEP_F1_2 coord: 20..282
Blast
BLAST of TCONS_00067047-protein vs. Swiss-Prot (Human)
Match:
OPSD (Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1)
HSP 1 Score: 102.064 bits (253), Expect = 1.878e-24
Identity = 76/294 (25.85%), Postives = 143/294 (48.64%), Query Frame = 0
Query: 13 VVVLSIPLNSLIIIVFLKTRQSRHDAHRDFLILSLAVSDILQALFGYPAEIRSLFNGELQDAESAACKFTAFAVTFFGLTSINHLVFMMIKRACIVLYPFGTLTTEKFYSYVSVTFSWLISFVFALIPWVSWSGY--GGTKDRCSINWK--DGSLHNRIYLYILFGCQFVLPFLIIIICYFIILKVLRKSVDSQRSRNASLPKEIQEKLKKNESERKAVSMVVLMTSAYLIAWTPYAIISLMTI-----NMGDDFISQNAVLYISFLAKSSTLCNPVIYAIYSNKEYRMRMIRS 297
++VL P+N L + V ++ ++ R ++++L+LAV+D+ L G+ + + + +G + C F T G ++ LV + I+R +V P + ++ + V F+W+++ A P WS Y G + C I++ ++N ++ +F F +P +II CY ++ ++++ Q QE ++E++ MV++M A+LI W PYA ++ N G F++ A F AKS+ + NPVIY I NK++R M+ +
Sbjct: 47 LIVLGFPINFLTLYVTVQHKKLRTP--LNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTG-CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQ-----------QESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPA-----FFAKSAAIYNPVIY-IMMNKQFRNCMLTT 320
The following BLAST results are available for this feature:
BLAST of TCONS_00067047-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M A L L I F A V I L T S V V V L S I P L N S L I I I V F L K T R Q S R H D A H R D F L I L S L A V S D I L Q A L F G Y P A E I R S L F N G E L Q D A E S A A C K F T A F A V T F F G L T S I N H L V F M M I K R A C I V L Y P F G T L T T E K F Y S Y V S V T F S W L I S F V F A L I P W V S W S G Y G G T K D R C S I N W K D G S L H N R I Y L Y I L F G C Q F V L P F L I I I I C Y F I I L K V L R K S V D S Q R S R N A S L P K E I Q E K L K K N E S E R K A V S M V V L M T S A Y L I A W T P Y A I I S L M T I N M G D D F I S Q N A V L Y I S F L A K S S T L C N P V I Y A I Y S N K E Y R M R M I R S Y N K W R S S N I I S S S S N S K E D G A S C A G G Q C A E K F D S S S S S T G W T S V Q F A D I Y R P S K I S T A N V E G V 50 100 150 200 250 300 350 Expect = 1.88e-24 / Id = 25.85 Sequence OPSD
Match Name E-value Identity Description
OPSD 1.878e-24 25.85 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 [more]
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