TCONS_00067045 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067045
Unique NameTCONS_00067045
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067045 ID=TCONS_00067045|Name=TCONS_00067045|organism=Clytia hemisphaerica|type=transcript|length=857bp
tacgcttccaaaaatgtatagtttgtaatgggaactggggcggaaaaatt
aatgcaattctgcgacatgcattaagttacccgagtatCTATATTTTCCC
AAAACAGTAAAAAGATGTTTGTAAAACATATCACAAAATTGAGTTCAAAT
GTGTTTAGTGCATGTGCAAAACCAAGCTTATTAAAAATTGCACAGATCAA
TACAGTAAGACCTCTATCTTTAACACAAATAACTAATCAAAATTGGAAAT
TGGGAAAGCTAAATCATGTGGCTATTGCTGTAAATGATCTTGAAAAATCC
ATATCAATGTATCGTGATGTGCTTGGTGCAAAAGTGAGCAACCCTGAACC
GCAAGAGGAACACGGTGTTTATACTGTGTTTATTGAATTGGGAGATACAA
AAATTGAACTTCTTTACCCTCTTGGTGAAAATAGTCCCATTGAAGGATTC
TTAAAGAAAAATCCTAGTGGCGGTATTCACCATATTTGTTTGGAAGTTTC
TGATGTTTACGAAGCTATGGAAACCATGAAGGAAAAAGGCATCCGTGTGC
TTTCAAAAGAACCTAAGATTGGTGCTCATGGAAAACCTGTTGTATTTCTT
CACCCAAAGGACTGTGGAGGTGTTTTGACAGAATTAGAACAAGAATGAAT
GTAATTGGTTCTGAAAtgaacaaataatattttttgataaaaatgaaaat
ttcataaacacaCTTTCTTCATTCTACTGACaaccaaaataaattcttaT
ATATTTATcctatttttggacctaccccggtggggtgaaggtcctataaa
ttaacccgtgttcgttagttagttagttcgttcgttcgttcgttcgttcg
ttcgtNN
Run BLAST on NCBI

protein sequence of TCONS_00067045-protein

>TCONS_00067045-protein ID=TCONS_00067045-protein|Name=TCONS_00067045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
MFVKHITKLSSNVFSACAKPSLLKIAQINTVRPLSLTQITNQNWKLGKLN
HVAIAVNDLEKSISMYRDVLGAKVSNPEPQEEHGVYTVFIELGDTKIELL
YPLGENSPIEGFLKKNPSGGIHHICLEVSDVYEAMETMKEKGIRVLSKEP
KIGAHGKPVVFLHPKDCGGVLTELEQE
Run BLAST on NCBI

transcript from alignment at scaffold_462:615271..616127

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067045 ID=TCONS_00067045|Name=TCONS_00067045|organism=Clytia hemisphaerica|type=transcript|length=857bp|location=Sequence derived from alignment at scaffold_462:615271..616127 (Clytia hemisphaerica)
NNacgaacgaacgaacgaacgaacgaacgaactaactaactaacgaacac
gggttaatttataggaccttcaccccaccggggtaggtccaaaaataggA
TAAATATAtaagaatttattttggttGTCAGTAGAATGAAGAAAGtgtgt
ttatgaaattttcatttttatcaaaaaatattatttgttcaTTTCAGAAC
CAATTACATTCATTCTTGTTCTAATTCTGTCAAAACACCTCCACAGTCCT
TTGGGTGAAGAAATACAACAGGTTTTCCATGAGCACCAATCTTAGGTTCT
TTTGAAAGCACACGGATGCCTTTTTCCTTCATGGTTTCCATAGCTTCGTA
AACATCAGAAACTTCCAAACAAATATGGTGAATACCGCCACTAGGATTTT
TCTTTAAGAATCCTTCAATGGGACTATTTTCACCAAGAGGGTAAAGAAGT
TCAATTTTTGTATCTCCCAATTCAATAAACACAGTATAAACACCGTGTTC
CTCTTGCGGTTCAGGGTTGCTCACTTTTGCACCAAGCACATCACGATACA
TTGATATGGATTTTTCAAGATCATTTACAGCAATAGCCACATGATTTAGC
TTTCCCAATTTCCAATTTTGATTAGTTATTTGTGTTAAAGATAGAGGTCT
TACTGTATTGATCTGTGCAATTTTTAATAAGCTTGGTTTTGCACATGCAC
TAAACACATTTGAACTCAATTTTGTGATATGTTTTACAAACATCTTTTTA
CTGTTTTGGGAAAATATAGatactcgggtaacttaatgcatgtcgcagaa
ttgcattaatttttccgccccagttcccattacaaactatacatttttgg
aagcgta

Coding sequence (CDS) from alignment at scaffold_462:615271..616127

>TCONS_00067045 ID=TCONS_00067045|Name=TCONS_00067045|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_462:615271..616127 (Clytia hemisphaerica)
TCATTCTTGTTCTAATTCTGTCAAAACACCTCCACAGTCCTTTGGGTGAA
GAAATACAACAGGTTTTCCATGAGCACCAATCTTAGGTTCTTTTGAAAGC
ACACGGATGCCTTTTTCCTTCATGGTTTCCATAGCTTCGTAAACATCAGA
AACTTCCAAACAAATATGGTGAATACCGCCACTAGGATTTTTCTTTAAGA
ATCCTTCAATGGGACTATTTTCACCAAGAGGGTAAAGAAGTTCAATTTTT
GTATCTCCCAATTCAATAAACACAGTATAAACACCGTGTTCCTCTTGCGG
TTCAGGGTTGCTCACTTTTGCACCAAGCACATCACGATACATTGATATGG
ATTTTTCAAGATCATTTACAGCAATAGCCACATGATTTAGCTTTCCCAAT
TTCCAATTTTGATTAGTTATTTGTGTTAAAGATAGAGGTCTTACTGTATT
GATCTGTGCAATTTTTAATAAGCTTGGTTTTGCACATGCACTAAACACAT
TTGAACTCAATTTTGTGATATGTTTTACAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041884XLOC_041884Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067045-proteinTCONS_00067045-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067045-exon-scaffold_462-1491911889:615271..616127TCONS_00067045-exon-scaffold_462-1491911889:615271..616127Clytia hemisphaericaexon
TCONS_00067045-exon-scaffold_462-1510915933:615271..616127TCONS_00067045-exon-scaffold_462-1510915933:615271..616127Clytia hemisphaericaexon
TCONS_00067045-exon-scaffold_462-1575043694:615271..616127TCONS_00067045-exon-scaffold_462-1575043694:615271..616127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:615271..616127 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
136.139	129.59	141.704	132.783	46.8825	31.8451	36.9196	38.8466	38.9053	30.3662	33.4299	30.692	24.8061	25.3712	34.0078	43.0234	40.0796	42.7006	22.0349	23.4398	41.8271	36.6224	63.1974	60.9338	20.0425	25.0329	38.7711	31.9048	41.9442	42.3293
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029068Glyas_Bleomycin-R_OHBP_Dase
IPR017515MeMalonyl-CoA_epimerase
Blast
[Close]
BLAST of TCONS_00067045 vs. Swiss-Prot (Human)
Match: MCEE (Methylmalonyl-CoA epimerase, mitochondrial OS=Homo sapiens GN=MCEE PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.034e-61
Identity = 95/155 (61.29%), Postives = 119/155 (76.77%), Query Frame = 1 
Query:  190 AQINTVRPLS----LTQITNQNWKLGKLNHVAIAVNDLEKSISMYRDVLGAKVSNPEPQEEHGVYTVFIELGDTKIELLYPLGENSPIEGFLKKNPSGGIHHICLEVSDVYEAMETMKEKGIRVLSKEPKIGAHGKPVVFLHPKDCGGVLTELEQ 642
            A I TVR  S    L Q+T   W LG+LNHVAIAV DLEK+ + Y+++LGA+VS   P  EHGV  VF+ LG+TK+ELL+PLG +SPI GFL+KN +GG+HHIC+EV ++  A+  +K+K IR LS+E KIGAHGKPV+FLHPKDCGGVL ELEQ
Sbjct:   21 APIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGRDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQ 175
The following BLAST results are available for this feature:
BLAST of TCONS_00067045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCEE1.034e-6161.29Methylmalonyl-CoA epimerase, mitochondrial OS=Homo... [more]
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