Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067045 ID=TCONS_00067045|Name=TCONS_00067045|organism=Clytia hemisphaerica|type=transcript|length=857bp
tacgcttccaaaaatgtatagtttgtaatgggaactggggcggaaaaatt
aatgcaattctgcgacatgcattaagttacccgagtatCTATATTTTCCC
AAAACAGTAAAAAGATGTTTGTAAAACATATCACAAAATTGAGTTCAAAT
GTGTTTAGTGCATGTGCAAAACCAAGCTTATTAAAAATTGCACAGATCAA
TACAGTAAGACCTCTATCTTTAACACAAATAACTAATCAAAATTGGAAAT
TGGGAAAGCTAAATCATGTGGCTATTGCTGTAAATGATCTTGAAAAATCC
ATATCAATGTATCGTGATGTGCTTGGTGCAAAAGTGAGCAACCCTGAACC
GCAAGAGGAACACGGTGTTTATACTGTGTTTATTGAATTGGGAGATACAA
AAATTGAACTTCTTTACCCTCTTGGTGAAAATAGTCCCATTGAAGGATTC
TTAAAGAAAAATCCTAGTGGCGGTATTCACCATATTTGTTTGGAAGTTTC
TGATGTTTACGAAGCTATGGAAACCATGAAGGAAAAAGGCATCCGTGTGC
TTTCAAAAGAACCTAAGATTGGTGCTCATGGAAAACCTGTTGTATTTCTT
CACCCAAAGGACTGTGGAGGTGTTTTGACAGAATTAGAACAAGAATGAAT
GTAATTGGTTCTGAAAtgaacaaataatattttttgataaaaatgaaaat
ttcataaacacaCTTTCTTCATTCTACTGACaaccaaaataaattcttaT
ATATTTATcctatttttggacctaccccggtggggtgaaggtcctataaa
ttaacccgtgttcgttagttagttagttcgttcgttcgttcgttcgttcg
ttcgtNN Run BLAST on NCBI protein sequence of TCONS_00067045-protein >TCONS_00067045-protein ID=TCONS_00067045-protein|Name=TCONS_00067045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
MFVKHITKLSSNVFSACAKPSLLKIAQINTVRPLSLTQITNQNWKLGKLN
HVAIAVNDLEKSISMYRDVLGAKVSNPEPQEEHGVYTVFIELGDTKIELL
YPLGENSPIEGFLKKNPSGGIHHICLEVSDVYEAMETMKEKGIRVLSKEP
KIGAHGKPVVFLHPKDCGGVLTELEQE Run BLAST on NCBI transcript from alignment at scaffold_462:615271..616127 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067045 ID=TCONS_00067045|Name=TCONS_00067045|organism=Clytia hemisphaerica|type=transcript|length=857bp|location=Sequence derived from alignment at scaffold_462:615271..616127 (Clytia hemisphaerica)
NNacgaacgaacgaacgaacgaacgaacgaactaactaactaacgaacac
gggttaatttataggaccttcaccccaccggggtaggtccaaaaataggA
TAAATATAtaagaatttattttggttGTCAGTAGAATGAAGAAAGtgtgt
ttatgaaattttcatttttatcaaaaaatattatttgttcaTTTCAGAAC
CAATTACATTCATTCTTGTTCTAATTCTGTCAAAACACCTCCACAGTCCT
TTGGGTGAAGAAATACAACAGGTTTTCCATGAGCACCAATCTTAGGTTCT
TTTGAAAGCACACGGATGCCTTTTTCCTTCATGGTTTCCATAGCTTCGTA
AACATCAGAAACTTCCAAACAAATATGGTGAATACCGCCACTAGGATTTT
TCTTTAAGAATCCTTCAATGGGACTATTTTCACCAAGAGGGTAAAGAAGT
TCAATTTTTGTATCTCCCAATTCAATAAACACAGTATAAACACCGTGTTC
CTCTTGCGGTTCAGGGTTGCTCACTTTTGCACCAAGCACATCACGATACA
TTGATATGGATTTTTCAAGATCATTTACAGCAATAGCCACATGATTTAGC
TTTCCCAATTTCCAATTTTGATTAGTTATTTGTGTTAAAGATAGAGGTCT
TACTGTATTGATCTGTGCAATTTTTAATAAGCTTGGTTTTGCACATGCAC
TAAACACATTTGAACTCAATTTTGTGATATGTTTTACAAACATCTTTTTA
CTGTTTTGGGAAAATATAGatactcgggtaacttaatgcatgtcgcagaa
ttgcattaatttttccgccccagttcccattacaaactatacatttttgg
aagcgta Coding sequence (CDS) from alignment at scaffold_462:615271..616127 >TCONS_00067045 ID=TCONS_00067045|Name=TCONS_00067045|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_462:615271..616127 (Clytia hemisphaerica)
TCATTCTTGTTCTAATTCTGTCAAAACACCTCCACAGTCCTTTGGGTGAA
GAAATACAACAGGTTTTCCATGAGCACCAATCTTAGGTTCTTTTGAAAGC
ACACGGATGCCTTTTTCCTTCATGGTTTCCATAGCTTCGTAAACATCAGA
AACTTCCAAACAAATATGGTGAATACCGCCACTAGGATTTTTCTTTAAGA
ATCCTTCAATGGGACTATTTTCACCAAGAGGGTAAAGAAGTTCAATTTTT
GTATCTCCCAATTCAATAAACACAGTATAAACACCGTGTTCCTCTTGCGG
TTCAGGGTTGCTCACTTTTGCACCAAGCACATCACGATACATTGATATGG
ATTTTTCAAGATCATTTACAGCAATAGCCACATGATTTAGCTTTCCCAAT
TTCCAATTTTGATTAGTTATTTGTGTTAAAGATAGAGGTCTTACTGTATT
GATCTGTGCAATTTTTAATAAGCTTGGTTTTGCACATGCACTAAACACAT
TTGAACTCAATTTTGTGATATGTTTTACAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067045-exon-scaffold_462-1491911889:615271..616127 | TCONS_00067045-exon-scaffold_462-1491911889:615271..616127 | Clytia hemisphaerica | exon |
| TCONS_00067045-exon-scaffold_462-1510915933:615271..616127 | TCONS_00067045-exon-scaffold_462-1510915933:615271..616127 | Clytia hemisphaerica | exon |
| TCONS_00067045-exon-scaffold_462-1575043694:615271..616127 | TCONS_00067045-exon-scaffold_462-1575043694:615271..616127 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:615271..616127 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029068 | Glyas_Bleomycin-R_OHBP_Dase |
| IPR017515 | MeMalonyl-CoA_epimerase |
Blast
BLAST of TCONS_00067045 vs. Swiss-Prot (Human)
Match: MCEE (Methylmalonyl-CoA epimerase, mitochondrial OS=Homo sapiens GN=MCEE PE=1 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.034e-61 Identity = 95/155 (61.29%), Postives = 119/155 (76.77%), Query Frame = 1 Query: 190 AQINTVRPLS----LTQITNQNWKLGKLNHVAIAVNDLEKSISMYRDVLGAKVSNPEPQEEHGVYTVFIELGDTKIELLYPLGENSPIEGFLKKNPSGGIHHICLEVSDVYEAMETMKEKGIRVLSKEPKIGAHGKPVVFLHPKDCGGVLTELEQ 642
A I TVR S L Q+T W LG+LNHVAIAV DLEK+ + Y+++LGA+VS P EHGV VF+ LG+TK+ELL+PLG +SPI GFL+KN +GG+HHIC+EV ++ A+ +K+K IR LS+E KIGAHGKPV+FLHPKDCGGVL ELEQ
Sbjct: 21 APIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGRDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQ 175
The following BLAST results are available for this feature:
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