TCONS_00067028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067028
Unique NameTCONS_00067028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067028 ID=TCONS_00067028|Name=TCONS_00067028|organism=Clytia hemisphaerica|type=transcript|length=456bp
NNATAGTAGGATTTTGGTCAGATGTCGTAAATGGTACTGAAGAGGTTTCA
TTAGTTGCATCCTGGGCATCATTTTCATAATCTAAATCAATCAAATCCGG
ATGAATATTTCGATAATCATCATCTTGTTCTTCGTCACTACTTTCCGAAT
CAGAACTGTCATAGACATGTATATCATTTAAATCGACGTCATTGATTCTG
CCAAAATAAGGATCATGCTTTAGAATATTTGGTTTAATTTCCTCTTCGAC
TCCATTGAATTTCTCTTCGAAAGTATCACAGTTTCCTTTtaagtcatttt
cattttcccagggCATGAATAATTGGAGGAGTACCATGAAATATTCGTTC
CTCTCTTTGAGTTTGCTGACCTTGTGATAACGTATTACGCATGGACGACT
tcgttttctcatttttcccaTTCCGTTTTTCAATGTAATAGTTTTTGGAG
CATTGT
Run BLAST on NCBI

protein sequence of TCONS_00067028-protein

>TCONS_00067028-protein ID=TCONS_00067028-protein|Name=TCONS_00067028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
NAPKTITLKNGMGKMRKRSRPCVIRYHKVSKLKERNEYFMVLLQLFMPWE
NENDLKGNCDTFEEKFNGVEEEIKPNILKHDPYFGRINDVDLNDIHVYDS
SDSESSDEEQDDDYRNIHPDLIDLDYENDAQDATNETSSVPFTTSDQNPT
X
Run BLAST on NCBI

transcript from alignment at scaffold_462:181576..182031

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067028 ID=TCONS_00067028|Name=TCONS_00067028|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at scaffold_462:181576..182031 (Clytia hemisphaerica)
ACAATGCTCCAAAAACTATTACATTGAAAAACGGAAtgggaaaaatgaga
aaacgaAGTCGTCCATGCGTAATACGTTATCACAAGGTCAGCAAACTCAA
AGAGAGGAACGAATATTTCATGGTACTCCTCCAATTATTCATGccctggg
aaaatgaaaatgacttaAAAGGAAACTGTGATACTTTCGAAGAGAAATTC
AATGGAGTCGAAGAGGAAATTAAACCAAATATTCTAAAGCATGATCCTTA
TTTTGGCAGAATCAATGACGTCGATTTAAATGATATACATGTCTATGACA
GTTCTGATTCGGAAAGTAGTGACGAAGAACAAGATGATGATTATCGAAAT
ATTCATCCGGATTTGATTGATTTAGATTATGAAAATGATGCCCAGGATGC
AACTAATGAAACCTCTTCAGTACCATTTACGACATCTGACCAAAATCCTA
CTATNN

Coding sequence (CDS) from alignment at scaffold_462:181576..182031

>TCONS_00067028 ID=TCONS_00067028|Name=TCONS_00067028|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_462:181576..182031 (Clytia hemisphaerica)
AATGCTCCAAAAACTATTACATTGAAAAACGGAAtgggaaaaatgagaaa
acgaAGTCGTCCATGCGTAATACGTTATCACAAGGTCAGCAAACTCAAAG
AGAGGAACGAATATTTCATGGTACTCCTCCAATTATTCATGccctgggaa
aatgaaaatgacttaAAAGGAAACTGTGATACTTTCGAAGAGAAATTCAA
TGGAGTCGAAGAGGAAATTAAACCAAATATTCTAAAGCATGATCCTTATT
TTGGCAGAATCAATGACGTCGATTTAAATGATATACATGTCTATGACAGT
TCTGATTCGGAAAGTAGTGACGAAGAACAAGATGATGATTATCGAAATAT
TCATCCGGATTTGATTGATTTAGATTATGAAAATGATGCCCAGGATGCAA
CTAATGAAACCTCTTCAGTACCATTTACGACATCTGACCAAAATCCTACT
ATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041868XLOC_041868Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067028-proteinTCONS_00067028-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067028-exon-scaffold_462-1491911889:181576..182031TCONS_00067028-exon-scaffold_462-1491911889:181576..182031Clytia hemisphaericaexon
TCONS_00067028-exon-scaffold_462-1510915933:181576..182031TCONS_00067028-exon-scaffold_462-1510915933:181576..182031Clytia hemisphaericaexon
TCONS_00067028-exon-scaffold_462-1575043694:181576..182031TCONS_00067028-exon-scaffold_462-1575043694:181576..182031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:181576..182031 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22841	2.14954	0.731461	1.35474	1.54959	1.37757	1.29265	0.864405	0.522028	1.32935	1.37275	1.38577	0.308531	0.535401	0.420159	1.51942	1.38628	0.165608	0	0.319551	0.579121	1.03477	0.307064	0.43945	1.72773	2.49209	1.24705	0.237224	1.30451	0.571851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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