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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067023 ID=TCONS_00067023|Name=TCONS_00067023|organism=Clytia hemisphaerica|type=transcript|length=3849bpRun BLAST on NCBI protein sequence of Putative tyrosine kinase receptor protein >TCONS_00067023-protein ID=TCONS_00067023-protein|Name=Putative tyrosine kinase receptor protein|organism=Clytia hemisphaerica|type=polypeptide|length=989bp LDIIYILQLTMNGFHRHTALSLYLLCLKLFQLVVANTQADRATLYFASGKRun BLAST on NCBI transcript from alignment at scaffold_462:934389..949003- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067023 ID=TCONS_00067023|Name=TCONS_00067023|organism=Clytia hemisphaerica|type=transcript|length=14615bp|location=Sequence derived from alignment at scaffold_462:934389..949003- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_462:934389..949003- >TCONS_00067023 ID=TCONS_00067023|Name=TCONS_00067023|organism=Clytia hemisphaerica|type=CDS|length=38610bp|location=Sequence derived from alignment at scaffold_462:934389..949003- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067023 vs. Swiss-Prot (Human)
Match: FGFR1 (Fibroblast growth factor receptor 1 OS=Homo sapiens GN=FGFR1 PE=1 SV=3) HSP 1 Score: 294.664 bits (753), Expect = 2.896e-84 Identity = 174/493 (35.29%), Postives = 267/493 (54.16%), Query Frame = 3
Query: 1266 SSVEVYDRQADSYTIQNLVKGTSYDFRIRASNIKGDSDYSEIFTLTTIGLDNGVPTSEPTTDDQILGNLDMTTMIGIFGGVFIALVVGFICVCIFVRKMQKGEKEDTAPPQQSFASFAPSTTPGTQQRSMVDGHAAAMEMQPLMMRQ-------------------PDE--WEFPRDRLTITTVLGAGAFGVVMRGLAQGI-KGSVGQIT-VAVKTVRDTTNEAATKDLIAELNLLKLIPEHQNVVGLLGCCTYADPLYVIVEYCSNGDLQGFLRSSRGIYERYYRTSYGGAVPNLTSKMLLTFAWQVAKGMNHLSSMKVIHRDLAARNVLVDDQLVCKVSDFGFARDIYVEDHYLKRSAGGRFPIKWMAIESLLDGISTTKSDVWSFGVVFWELITLGASPYPGMNSYEVVSFLQDGYRMDKPKHCADEIYQLMMDCWCVAPGRRPSFVDLINKCQLLMDEADNKELINMNFYPDHLYVNFDGSNSSAVSTA 2675
+ V D++ + ++N+ + ++ A N G S +S T+ + + P L + +I G I+ +VG + V KM+ G K+ Q + A S P +Q ++ +A+M L++R P++ WE PRDRL + LG G FG V+ A G+ K ++T VAVK ++ E DLI+E+ ++K+I +H+N++ LLG CT PLYVIVEY S G+L+ +L++ R Y L+SK L++ A+QVA+GM +L+S K IHRDLAARNVLV + V K++DFG ARDI+ D+Y K++ GR P+KWMA E+L D I T +SDVWSFGV+ WE+ TLG SPYPG+ E+ L++G+RMDKP +C +E+Y +M DCW P +RP+F L+ ++ N+E ++++ D +F + SS S+
Sbjct: 314 AGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEALEERPAVMTSP---------LYLEIIIYCTGAFLISCMVG----SVIVYKMKSGTKKSDFHSQMAVHKLAKSI-PLRRQVTVSADSSASMNSGVLLVRPSRLSSSGTPMLAGVSEYELPEDPRWELPRDRLVLGKPLGEGCFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY-KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQEYLDLSMPLDQYSPSFPDTRSSTCSSG 791 The following BLAST results are available for this feature:
BLAST of TCONS_00067023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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