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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067021 ID=TCONS_00067021|Name=TCONS_00067021|organism=Clytia hemisphaerica|type=transcript|length=1316bp
AGAGAGTTCACCGCCTAGGTTGTGCTACTTTCCGGATCAGATTTAAAGGA
CCGGATCGCAATTTTTTGTTATAGTCCACGGAACGCGCCGTAACTTTCCT
TCAAGACttcatatcaaaatcaaaatggtgGGTGAAGACATATTTACAAA
TCCAAATCTCATGAAAATCTACTAGAATCTCGACGATCGTGTATTTGTTT
TGCTCACTGAGGCTGGTTTGGCAGCAACTGACCTTTATTTAACCTTTTTC
TGAGGAAAGTTTTCTATATCATTTATGAGTAGTTGTTTTTATTGGAGGAT
GAGCTCacggatttttcgatttttttacaGGCCAAGCGCACCAAAAAGGT
TGGCATTACTGGTAAATATGGTACCAGATATGGTGCTTCACTCAGAAAGA
TGGCCAAGAAAATCGAAGTCAGTCAACATGCCAAATATACCTGCAACTTC
TGTGGaaagGATTCCTTGAAAAGAGATGCTGTGGGCATCTGGAAATGTAA
AGGATGCAGAAAAACTATTGCTGGTGGAGCATGGGCACCAAACACATCCG
CAGCTGTTACAGTCAGAAGTGCTATCCGTCGTCTACGTGAATTACAAGAA
ATATAAATTTCGATCATTTACAATAACATTTGTGTCATTTATATCGACTT
CTCTACTCCTGATACTATCACGTAGATACTGTTgagcttaaccctattca
tcATACTAGACTTTTTGTAacccaccccttaacttttgaactagttggtc
tttttggatgaaatttgtgaggtagattcgctggagttaggtattcggta
gtcgggattcgaaaaagctcaataaaaacttaacgaaaaaagatattaac
ttgaaataaaaaacggatgcaagcacacatactaaggaataaatcccaat
aaaaaaaattcagaatgtgagctcagttgtcacgtgactatgggaaattc
ccctattcgggattcaaatcatGTCAGGGACCTTTCTTCAAAAACTCGCC
AGTCATCAAGGAAtagttggattgacttcaaataaaaaacggatgcaagt
tcacatgtcaaggaaaatattccaaacaaaaaaattcagaatatgagctt
agttgtcacgtgactatgggaaattcccctatttgggagttatttcaatt
tagagaccatttttaaaaagcttaccagtcataaggaaatggttggattg
acttcaaataacaaacggatgcaagttcacatgtcaagaaaaacattcca
aaaaagaaaattcagaatatgagcttagttgtcacgtgactatgggaaat
tccccttttcaagagt Run BLAST on NCBI transcript from alignment at scaffold_462:907496..915762- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067021 ID=TCONS_00067021|Name=TCONS_00067021|organism=Clytia hemisphaerica|type=transcript|length=8267bp|location=Sequence derived from alignment at scaffold_462:907496..915762- (Clytia hemisphaerica)
AGAGAGTTCACCGCCTAGGTTGTGCTACTTTCCGGATCAGATTTAAAGGA
CCGGATCGCAATTTTTTGTTATAGTCCACGGAACGCGCCGTAACTTTCCT
TCAAGACTTCATATCAAAATCAAAATGGTGGGTGAAGACATATTTACAAA
TCCAAATCTCATGAAAATCTACTAGAATCTCGACGATCGTGTATTTGTTT
TGCTCACTGAGGCTGGTTTGGCAGCAACTGACCTTTATTTAACCTTTTTC
TGAGGAAAGTTTTCTATATCATTTATGAGTAGTTGTTTTTATTGGAGGAT
GAGCTCACGGATTTTTCGATTTTTTTACAGGCCAAGCGCACCAAAAAGGT
TGGCATTACTGGTAAATATGGTACCAGATATGGTGCTTCACTCAGAAAGA
TGGCCAAGAAAATCGAAGTCAGTCAACATGCCAAATATACCTGCAACTTC
TGTGGAAAGGTATATCATCAAAATTATAATGATAAGGCCACAATCACATA
TAACTTGTGTTCGCTTTGTTTTTAGTTGGAAAAAAATTAGCTGGTCAGTC
AACAAAAAATTTCAAAATAAGCTTTGAAAACCTATCAGGACCAATTTTGT
TTTAATTGGATTTGGACAGTTTAAGTTTGCATTTGGCTAAAGCTTCAGAT
GCATCCGGCTGGACTTAGAATTTTTTTCAAGTTGAATAGTGACCAAAGGG
GGTCTCGAACCGGGAACCTATAGGTTCCGAAANNCGTTATTTGGGGTTAC
TTATACGAAGGTCTTAGTACTATATATAAATAAGTCTGACTGACGAGTTA
GGCTAACTGTTATGATCGCCATTACTCCGAAGAATCCACCACACGTGTGC
ACCGCCGACCGGGTGAGGTAACCCTATACTACGCGCTCCGTGTGGTATAT
GCGTGCGGCCCGCACAGCCGGATGCATCTGAAGCATTAGCCGAATCTGTT
TGTTTAAGGTGACAAGTCCAGAAGCCGAATCCATAAGTTACCTCCACATC
CCCAACCATGATAGGGTGACCACCCCAGACCACCCACCTATGTCTTCATT
TTTCCTTGTATATCGCGTGTAATAATCACTTGTGGTTTTAGTTAACACAT
GTGCATTGTATGTGATGTAGAACATTTATATTAGCATTACGCAATGGTTT
TTTCCAAATATGGTAATACAAGATTTCGCATTGAACTGACCACGTGCATT
TGCGTAGGGTAAAATGGCGAAATGCGAAAATCGATTTTGGCAAAATTTTT
TTGAAAAATGACCCTACAAGATTTGACTATCTTTTTATTCCATGAAGAGA
TTACTTTCAAATAAAAATATATTGACAATGAATGGGTAAGCAGCTTTCTA
GAAATCCAAACATAAGTTGCATAGCTTTTCACTTCAGGATTAAAAACAGT
CAAAAACCAGCTTTTTCCAATTTTCTTCGAGTTACAGGAATTAATTCCTT
GTTTGTTTTGATCTGAAATTTTCAGTAGGGTAGGACAACATGGTTCCCTT
GCTCATATCAGGGGGGGGTGAGACGGGGGTAAGAGAATTAAAGTTTCTAA
GTAAAATCTTAATTATCACCCAAAAAAGTGCCTTTTTTTGTCCATATCTT
TTAAATAGATTGTCCCAGCCTTATCCCTCTTTCAGTAAAGCTTCCTATAC
ATTTTGTCCTTCAGAAAAACCAAAAATATTGGCCTTAATTGCTTGCTTTC
AGTTCCTGTAGCCAGTAGTGTGACCACCTGTATTTCTATTTTAATTCGCG
CGGCTATTGTCAAAATATCTTTCAAACCAGACTCTTCCACTCAATATAAA
TAATAACTTTTCATCAATGACCAAATGATAATCAATAGGTGGACTGTATA
ATGAGGAATCTAATAATCGATAGACAGTCATAATGAGGATCTTAGGGGTC
TTGGCAAAAACCTTTCAAATTTCTTGTTGGTGTTAGGCTGATAAGGGGAG
CAGTCGGGTGTTTAAGATAAAAACTGCAATTATTGCTCTTTACGGAAATT
ATTGCCGAAAACGGCAATTTTTTCAACGATGAAATGCTGAATCAGCAGAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTCTT
TCTGGCTGTGTTTCGGCATCGATGCAGGATCTTTTAACATATTATTTTAG
AACTTTTCATGTTATTGAGCAACGAAAAATCGAAAAAATCACTTTTATAA
ACCCGAAAAACCTTTTTCTCGATGCAATTTTACAATTTTCAAACACCTCT
GACATCTTTGCCCTTAAAAGGACAACACATTTTGCTGATTCAGCATTTNN
NNNNNNNNNNNNNNTTTGCTGATTCAGCATTTCATCGTTTAAAAAATTGC
CGTTTTCGGCAATAATTTCCGAAAAGAGCAATAATTGCAGTTTTTATCTT
AAACACCCGACTGGGGAGAGGGGATTCGACTACATAACAATAAAAAGTAA
GTTTTGAAAGGAAAATCGTAATTTTACATGTTCATTTCAACTGATTTTCA
ATCATTTCTCACTAGGATTCCTTGAAAAGAGATGCTGTGGGCATCTGGAA
ATGTAAAGGATGCAGAAAAACTATTGCTGGTGGAGCATGGGCACCAAAGT
ATGTATTTATTTTATTCATTTTTCAACCTAAAACATCAAAGAAATATTTT
GAACATAATACACATGTTCCTATTTTGGTAACTTTGAGAAAATTGCAATT
AAAGTTTTCCCTTGATTCCGAAACCATTTTTAATGGCTTTGAAGTTAATG
TTTTCTGAAAGCTGTATATTTGTTGTTTTTTTGGACCTACCCCGGTGGGC
TGTAGGTCCTATAAATTAACCTCTGTTCGTTCGTTCATTCGTCCGTTCGT
CCGTTCGTTACCAGCTTTTCTCGGGATTGGCTCATTAGTTTTTCCTAATT
TTTGGCACAAAGATGCAAAATGGTAATGCCCAAAATGTAACGGAGCCCGA
TTTTCGAAAAAAATTCATTTCCAGCCGAAAATGCCGGAAATATGCCGAAA
ACCGGTTTTTTGGCATTTTCTCGAGATTTCATCATTAGTTTTTTCTAATT
TTTTGCACAAAGATGCGTATTAGCAATGCCTAAAACATGGATTAGTCATA
TTTTTGAGAAAAATTCTATTCCGGCTGAAAATGCCGGAAATATCCCGGAA
ATCGCCGTTTTTGCAGATTTTCATTGGACTTTTTCCTTATATTTCGTTGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTTCGCTAAACGATATATTTTCTGACTGATTTTTT
TCTCCTCGCATTGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCA
TCTAGCTTGTTTTTCAATAAAAAGGCATTCTTTTGGAAAGTAGATATGTT
TGTACATAACAGGTGCAACTTAGTAAGAGTGGACTTAAGCCTTTTTTTAA
TTGAACATGAATTTTGAAAAATGTTTGAGGGTTAATTTCTCCCTTTTAAA
GCTAAAAACCTGCACACGACACTCTGAAATAAAGTCACTTCATAGTGCGG
AAAGGGGTCTGATCCCCCCCTTGTTAAATGATCCCCCTTCTTGGCATCCC
CCAACCTTTAAAAATGGTTATCCCCCATGGGTTTTGGGCTAAATTTTCGA
AAATATATACTGTATAGTGTGATCCGATAATCCCTTCTTGCTGCTACCCA
TCCCCTTATAATTAAAAAAAAATGGCAAACTTCTTTCTTGCTTCTTGTTG
ACTCAGACTACCCAAACAGAAAAACATCCTTTCATGCAGACCAGATTTCA
TAACAGTGCTGGAAAATAATCTACAATATATGTAAGCCCCCCCCCTTCCT
TGCTATCCCCCCTTTTTTCATGAAAATTTCTGATCCTCCTCCTTCTTCGT
TTTTTCGGAAGGTGTCACCCCCTTAACTATGTACCTTAACTATGTAAACT
CAAATAAACCAAAAATCAATATCACCACTCTCTATCGGTATTATAATGAA
ATTAGCAAATATAAAAAGGATTTCCAGNGCGAACTATGCACTTACACCTA
GATTCAAGATAAAGAGAAAGGACAATATCAGTAAAATAAAGAAAAACTTA
TTTAAATATTTTGGTGGACTTCTTCCCTTTTATAATAAAAAGATAGACTT
GGGCCTTTCTATTATATATAGCAGAGCTTCACTGTGAAGTTTTGGGCCTA
ACTTTAAGAACTACTTGTTATGTACATTAAAAAAGAGACAATTGGCCAGA
GATTGACAAAAACTAAAGATTTCAAAATTCATAAAAACGGACCTAAGTCC
CTTTTGAACTAGGGGGTAGCCGGACTTGGCCTCTTTGGAATTAAGGTAGT
GAGTCATGTTTTATAAGAACCACTGTTATTATTTGTTAATGACTTTCAGG
CTAATTGATATCAATATGATTAACTTAAACTTGCAGATGGATGAATCGTT
TGCCTTTTTTGCAGTGTATGCTAAGCTTTGAAGGCAGAAAGTTTTGTGGA
GGAAAAGCCGTGAAATTTCTTAAGTTAACAAAACTTTTGGAAAAATTTCC
ATTTTTTGAAAATCTTTTTTTAATGGAAATAACTTTCGCAAATGGCTCAA
AATGTTTTTCTACAATCCCTAAGGAAGAAATATTGATAGCCGTTTGTCAT
AAGCCTTTTTATCTTCTTTTTTTTTTTTGCTTTTAATTAACTGAGAGGAA
AAAACCATTTTTTCCGCTTACTTTCTTACATCGACCAGCTAGCGTTAACT
TTGGCAAAAAAGGCGAAACTCTCTGCCCTAAAGTATCTTATCGGCCCTTT
TTACACCGGCCTTTGGCGTTATTTTTGGGCACGTGGCGTAATAAGGGCCG
GTGTAAAAAGGGGCCAAGATTTTGAAATTTTTATCTAAAAGTGGCGTTAA
TTTTCGATCATTGTTTCTCAATTTAAAGGATTTTAGGTATAATTCGAAGA
CAAAAATTATCCATTCTTTTACTTCATATCTAGGGCCTTACGAAAATCAG
TGATTTTGAATGGAATTTTCAACAATTTACTACTGAAACATGACATTTTA
ATGAAAATTTTAATGATTATTTACAAATTTGAAGCATAAGTAGCCATTTT
TACAAATTTTGGCGTTATTTTAACGGCCCTTATTGGCGTAAGCCCAAAAT
TAGGCTGTGGCGTAATAAGAGCCGGCGTAAAAAGGGCCTATAAGGTACTT
AATATTCGATTTTTTTCTCAAAGCTAATCAACACCAATTTTTCACATCGT
TCTGACCCAGTAAAATATCAAATCTTTTCTTCTTGTTTTATAGCACATCC
GCAGCTGTTACAGTCAGAAGTGCTATCCGTCGTCTACGTGAATTACAAGA
AATATAAATTTCGATCATTTACAATAACATTTGTGTCATTTATATCGACT
TCTCTACTCCTGATACTATCACGTAGATACTGTTGAGCTTAACCCTATTC
ATCATACTAGACTTTTTGTAACCCACCCCTTAACTTTTGAACTAGTTGGT
CTTTTTGGATGAAATTTGTGAGGTAGATTCGCTGGAGTTAGGTATTCGGT
AGTCGGGATTCGAAAAAGCTCAATAAAAACTTAACGAAAAAAGATATTAA
CTTGAAATAAAAAACGGATGCAAGCACACATACTAAGGAATAAATCCCAA
TAAAAAAAATTCAGAATGTGAGCTCAGTTGTCACGTGACTATGGGAAATT
CCCCTATTCGGGATTCAAATCATGTCAGGGACCTTTCTTCAAAAACTCGC
CAGTCATCAAGGAATAGTTGGATTGACTTCAAATAAAAAACGGATGCAAG
TTCACATGTCAAGGAAAATATTCCAAACAAAAAAATTCAGAATATGAGCT
TAGTTGTCACGTGACTATGGGAAATTCCCCTATTTGGGAGTTATTTCAAT
TTAGAGACCATTTTTAAAAAGCTTACCAGTCATAAGGAAATGGTTGGATT
GACTTCAAATAACAAACGGATGCAAGTTCACATGTCAAGAAAAACATTCC
AAAAAAGAAAATTCAGAATATGAGCTTAGTTGTCACGTGACTATGGGAAA
TTCCCCTTTTCAAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067021-exon-scaffold_462-1575043694:915304..915762 | TCONS_00067021-exon-scaffold_462-1575043694:915304..915762 | Clytia hemisphaerica | exon |
| TCONS_00067021-exon-scaffold_462-1575043694:912015..912097 | TCONS_00067021-exon-scaffold_462-1575043694:912015..912097 | Clytia hemisphaerica | exon |
| TCONS_00067021-exon-scaffold_462-1575043694:907496..908269 | TCONS_00067021-exon-scaffold_462-1575043694:907496..908269 | Clytia hemisphaerica | exon |
| TCONS_00067021-exon-scaffold_462-1510915933:915304..915762 | TCONS_00067021-exon-scaffold_462-1510915933:915304..915762 | Clytia hemisphaerica | exon |
| TCONS_00067021-exon-scaffold_462-1510915933:912015..912097 | TCONS_00067021-exon-scaffold_462-1510915933:912015..912097 | Clytia hemisphaerica | exon |
| TCONS_00067021-exon-scaffold_462-1510915933:907496..908269 | TCONS_00067021-exon-scaffold_462-1510915933:907496..908269 | Clytia hemisphaerica | exon |
| TCONS_00067021-exon-scaffold_462-1491911889:915304..915762 | TCONS_00067021-exon-scaffold_462-1491911889:915304..915762 | Clytia hemisphaerica | exon |
| TCONS_00067021-exon-scaffold_462-1491911889:912015..912097 | TCONS_00067021-exon-scaffold_462-1491911889:912015..912097 | Clytia hemisphaerica | exon |
| TCONS_00067021-exon-scaffold_462-1491911889:907496..908269 | TCONS_00067021-exon-scaffold_462-1491911889:907496..908269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:907496..915762 - |
Blast
BLAST of TCONS_00067021 vs. Swiss-Prot (Human)
Match: RL37A (60S ribosomal protein L37a OS=Homo sapiens GN=RPL37A PE=1 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 5.526e-42 Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 1
Query: 328 QAKRTKKVGITGKYGTRYGASLRKMAKKIEVSQHAKYTCNFCGKDSLKRDAVGIWKCKGCRKTIAGGAWAPNTSAAVTVRSAIRRLRELQE 600
AKRTKKVGI GKYGTRYGASLRKM KKIE+SQHAKYTC+FCGK +KR AVGIW C C KT+AGGAW NT++AVTV+SAIRRL+EL++
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKD 91
The following BLAST results are available for this feature:
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