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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067002 ID=TCONS_00067002|Name=TCONS_00067002|organism=Clytia hemisphaerica|type=transcript|length=1087bp
TTGGATATGCTTGCTACAAGTGATTTTGAGTCGACAAATCACCAAGAATG
CGCGAAAGAGGCTTCAAAGATTCAGAGATTctaaaaagGTGGAACGCTCA
TTTTCAAACAATCGTGTCGTTATCCCATCAGTTACAAACTTTTAAGATCA
AAATTGCACGTTGCACCAAAATAAAAGGCTCAAGCTTGGGATATACGGGA
GTTTACgggaaaaaggtatttttattGGAGATTTTAAGCAATTATTTAAA
ATGGAagcttttattttatattttcataatacttttatttatttatatat
ttatatacTTATTTACagatttctttaaaattatttacaatTATAATTTA
TCCAAATATTTGATCCACACAGCTTTCAGACTACcttttgtaaaaattgt
tttgGCGTTTTTTTGATGGCTTAAAAGTATGGCCCGTCTATTTTAATTCG
AATAACCGTTAACGACTTTTAAAGTAAAGCCTTTtccttttcacttttca
aaacgATGAATAAAGGTGCTAGTATAAAACTCCACCCGGATGATATATAT
TGGAAGGACCATAATTTCAGAATCCCTCAAAAAACTGTCAggtatttttg
ccaaaaatctcATCCCACCAACAGTTCGTTCGAGCTCTTTTCAATCCTAT
CCACATTTGAAGCAAATACAAAACACGAGAAAACAATCTTACCTTTAAAT
AGCTCCACTCAAACTTCACCGACAAGCCAGTCTCACTCAAATTGAAAACA
TTATCTTAGAAATTCTTTTCATAGTCTATTACATGACTCCCAAGCACCGT
GGGCCTGTTAGGGTCTTCAACGGCCGATTCATCAGATAGCCTATCCCACC
AGGGCCTTTTCAAATCGTTTATAAATTCCACGTGTTGTTTACGAGCCGCT
ACCATGACGGGCGTCGAACGTGACGCCAGCTGCTCTAACGTCATTTCATT
GGCTGAGCTCAAATTTGGCATTCGCGATAACGTTTCTGATTGGATGGTTA
ATTGACCAATCAGAGCGCGTCGATGGTCATCTCGTCTTCTCATTGATCGT
AACCCTATCACGTGGTTATTGAGCATTTGATTGGCCT Run BLAST on NCBI protein sequence of TCONS_00067002-protein >TCONS_00067002-protein ID=TCONS_00067002-protein|Name=TCONS_00067002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MRERGFKDSEILKRWNAHFQTIVSLSHQLQTFKIKIARCTKIKGSSLGYT
GVYGKKVFLLEILSNYLKWKLLFYIFIILLFIYIFIYLFTDFFKIIYNYN
LSKYLIHTAFRLPFVKIVLAFF Run BLAST on NCBI transcript from alignment at scaffold_462:778226..779555- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067002 ID=TCONS_00067002|Name=TCONS_00067002|organism=Clytia hemisphaerica|type=transcript|length=1330bp|location=Sequence derived from alignment at scaffold_462:778226..779555- (Clytia hemisphaerica)
TTGGATATGCTTGCTACAAGTGATTTTGAGTCGACAAATCACCAAGAATG
CGCGAAAGAGGCTTCAAAGATTCAGAGATTCTAAAAAGGTAAATAAAATT
GTTTTTAGTGTATTATTTGTTATTGGTGGACTTTGTGATGAGAAGAGGAT
TAGAGCGGAGTTAATTGATTATTTTACCTATCATTCAATTTGAAAAGTTA
AACCATTCAGCACCCTGACAAACTTGAAAATTGTTACCCCCAATGTAATA
AAACTTAATTTTCAGGTGGGTGTCTGAAATATTCAAACGAATCCTTTTCA
AAACTTATTTTCGAAATTTTCATTATTTAAGGTGGAACGCTCATTTTCAA
ACAATCGTGTCGTTATCCCATCAGTTACAAACTTTTAAGATCAAAATTGC
ACGTTGCACCAAAATAAAAGGCTCAAGCTTGGGATATACGGGAGTTTACG
GGAAAAAGGTATTTTTATTGGAGATTTTAAGCAATTATTTAAAATGGAAG
CTTTTATTTTATATTTTCATAATACTTTTATTTATTTATATATTTATATA
CTTATTTACAGATTTCTTTAAAATTATTTACAATTATAATTTATCCAAAT
ATTTGATCCACACAGCTTTCAGACTACCTTTTGTAAAAATTGTTTTGGCG
TTTTTTTGATGGCTTAAAAGTATGGCCCGTCTATTTTAATTCGAATAACC
GTTAACGACTTTTAAAGTAAAGCCTTTTCCTTTTCACTTTTCAAAACGAT
GAATAAAGGTGCTAGTATAAAACTCCACCCGGATGATATATATTGGAAGG
ACCATAATTTCAGAATCCCTCAAAAAACTGTCAGGTATTTTTGCCAAAAA
TCTCATCCCACCAACAGTTCGTTCGAGCTCTTTTCAATCCTATCCACATT
TGAAGCAAATACAAAACACGAGAAAACAATCTTACCTTTAAATAGCTCCA
CTCAAACTTCACCGACAAGCCAGTCTCACTCAAATTGAAAACATTATCTT
AGAAATTCTTTTCATAGTCTATTACATGACTCCCAAGCACCGTGGGCCTG
TTAGGGTCTTCAACGGCCGATTCATCAGATAGCCTATCCCACCAGGGCCT
TTTCAAATCGTTTATAAATTCCACGTGTTGTTTACGAGCCGCTACCATGA
CGGGCGTCGAACGTGACGCCAGCTGCTCTAACGTCATTTCATTGGCTGAG
CTCAAATTTGGCATTCGCGATAACGTTTCTGATTGGATGGTTAATTGACC
AATCAGAGCGCGTCGATGGTCATCTCGTCTTCTCATTGATCGTAACCCTA
TCACGTGGTTATTGAGCATTTGATTGGCCT Coding sequence (CDS) from alignment at scaffold_462:778226..779555- >TCONS_00067002 ID=TCONS_00067002|Name=TCONS_00067002|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_462:778226..779555- (Clytia hemisphaerica)
GTGGAACGCTCATTTTCAAACAATCGTGTCGTTATCCCATCAGTTACAAA
CTTTTAAGATCAAAATTGCACGTTGCACCAAAATAAAAGGCTCAAGCTTG
GGATATACGGGAGTTTACGGGAAAAAGGTATTTTTATTGGAGATTTTAAG
CAATTATTTAAAATGGAAGCTTTTATTTTATATTTTCATAATACTTTTAT
TTATTTATATATTTATATACTTATTTACAGATTTCTTTAAAATTATTTAC
AATTATAATTTATCCAAATATTTGATCCACACAGCTTTCAGACTACCTTT
TGTAAAAATTGTTTTGGCGTTTTTTTGAATGCGCGAAAGAGGCTTCAAAG
ATTCAGAGATTCTAAAAAGGTGGAACGCTCATTTTCAAACAATCGTGTCG
TTATCCCATCAGTTACAAACTTTTAAGATCAAAATTGCACGTTGCACCAA
AATAAAAGGCTCAAGCTTGGGATATACGGGAGTTTACGGGAAAAAGGTAT
TTTTATTGGAGATTTTAAGCAATTATTTAAAATGGAAGCTTTTATTTTAT
ATTTTCATAATACTTTTATTTATTTATATATTTATATACTTATTTACAGA
TTTCTTTAAAATTATTTACAATTATAATTTATCCAAATATTTGATCCACA
CAGCTTTCAGACTACCTTTTGTAAAAATTGTTTTGGCGTTTTTTTGAATG
CGCGAAAGAGGCTTCAAAGATTCAGAGATTCTAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067002-exon-scaffold_462-1575043694:779468..779555 | TCONS_00067002-exon-scaffold_462-1575043694:779468..779555 | Clytia hemisphaerica | exon |
| TCONS_00067002-exon-scaffold_462-1575043694:778226..779224 | TCONS_00067002-exon-scaffold_462-1575043694:778226..779224 | Clytia hemisphaerica | exon |
| TCONS_00067002-exon-scaffold_462-1510915933:779468..779555 | TCONS_00067002-exon-scaffold_462-1510915933:779468..779555 | Clytia hemisphaerica | exon |
| TCONS_00067002-exon-scaffold_462-1510915933:778226..779224 | TCONS_00067002-exon-scaffold_462-1510915933:778226..779224 | Clytia hemisphaerica | exon |
| TCONS_00067002-exon-scaffold_462-1491911889:779468..779555 | TCONS_00067002-exon-scaffold_462-1491911889:779468..779555 | Clytia hemisphaerica | exon |
| TCONS_00067002-exon-scaffold_462-1491911889:778226..779224 | TCONS_00067002-exon-scaffold_462-1491911889:778226..779224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:778226..779555 - |
Blast
The following BLAST results are available for this feature:
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