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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066994 ID=TCONS_00066994|Name=TCONS_00066994|organism=Clytia hemisphaerica|type=transcript|length=1548bpRun BLAST on NCBI protein sequence of TCONS_00066994-protein >TCONS_00066994-protein ID=TCONS_00066994-protein|Name=TCONS_00066994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp MSKSVKKVMEESRNRGLEEIDLVDKGITNIADVPYLLNMRNITTLTLSHNRun BLAST on NCBI transcript from alignment at scaffold_462:688207..710854- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066994 ID=TCONS_00066994|Name=TCONS_00066994|organism=Clytia hemisphaerica|type=transcript|length=22648bp|location=Sequence derived from alignment at scaffold_462:688207..710854- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_462:688207..710854- >TCONS_00066994 ID=TCONS_00066994|Name=TCONS_00066994|organism=Clytia hemisphaerica|type=CDS|length=7479bp|location=Sequence derived from alignment at scaffold_462:688207..710854- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066994 vs. Swiss-Prot (Human)
Match: RSU1 (Ras suppressor protein 1 OS=Homo sapiens GN=RSU1 PE=1 SV=3) HSP 1 Score: 277.33 bits (708), Expect = 8.979e-89 Identity = 143/239 (59.83%), Postives = 182/239 (76.15%), Query Frame = 1
Query: 106 MSKSVKKVMEESRNRGLEEIDLVDKGITNIADVPYLLNMRNITTLTLSHNRITKLPDAVANLASXXXXXXXXXXXXXXPLTICNLPKLRFLNCGINKLQELPKGFGACPTLEVLDLTYNNLTDRSFPGNFFYLAPLRALYLGDNEFEVLPPEIKNLVNLQVLVVRDNDLISIPKEIGELTKLRELHIQNNRLQVLPPELGYLDLVSPKHMLRADNNPWIKEIADQLVLGTSHVLTYLRT 822
MSKS+KK++EESR + E+D+ D+GI+N+ DV L + +IT L LSHN++T +P +A L +LE LN FNN +E LP I +L KL+ LN G+N+L LP+GFG+ P LEVLDLTYNNL++ S PGNFFYL LRALYL DN+FE+LPP+I L LQ+L +RDNDLIS+PKEIGELT+L+ELHIQ NRL VLPPELG LDL K + +A+NNPW+ IADQ LG SHV Y+R+
Sbjct: 1 MSKSLKKLVEESREKNQPEVDMSDRGISNMLDVNGLFTLSHITQLVLSHNKLTMVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENNPWVTPIADQFQLGVSHVFEYIRS 239 The following BLAST results are available for this feature:
BLAST of TCONS_00066994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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