TCONS_00066973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066973
Unique NameTCONS_00066973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066973 ID=TCONS_00066973|Name=TCONS_00066973|organism=Clytia hemisphaerica|type=transcript|length=2754bp
GAAATGTGTGTTGATTAATAAAGTAGGGTGTGTTTTAAAAGGAATGTCGT
CGTTCACGGGTTGGGAAAGATGATAAGGgagagaaagaagaaaaactgat
tgaggttttgaattttttccccAGCCAAGTAATTTTATTTCAGGTTCAAA
CTTATCTTTCGCTTGCGAAAATATAGCACAGCAGCTGAGCAATGCAACAG
CACAGTAAAGGCACCATAGCTCGAAAGACAAGGGGCCGGAATAGTTATAT
TTGTGGGAGATGGCTCACAAAATAAGCTAAAAATACTGTTCGAGTTAATG
TACTACGGAGGTTCAGTTACAGAgggttttataaaaagttttcacgatac
catgaatttttttgagttaAGATGACATTCGAGATATAAAGGTTGGAGTA
ACGGTGAACTTTACTGTTCCATATTTGTTTTATgtagatcaatgttttga
aaaacacGCAAATTTGGTAAATTAGCTAATAGCAAATTTGAAACCAATGA
AATTAGcatggaaattcatgattttcttttcattgatGGTGGCCAATGGA
AAAGCTGAATTTACCATCAGGCGTGGTGAGAGTGGAATCCCTGATGTTGT
GGTGAAAGATTCACAACAGATGAATTGTACAAAGGATAACCCAACAGCAA
TACCGATATCCAGTGAAGACTTTAAATGTGTGAATCTTACAGCCTTATCA
GAAGAGGGATGTAGTAGCTTTATAACGGCTAGAGGACGACAATGTATTAA
TGTCACAGGAATAGAAACAATCAAAGCCGTCAAAAACGTCGTTCAAAACA
CTGCTACTCGAAAATGGAAGTGGGATACTCTGATTGACGAGAATTCAATC
TATGGAGACGTACTAACAAAGGATGGTGATGAGATCTGCTTCAATACAAA
TGTTACATACTGGAGTGGACAACTGCTACAATTGTGGTACAGGACGAGTC
AAACAAATGAGCAATGTGCAATTGTCAAGATACCAGGCGAACGAACATAT
CCAGCCAATTTAAATGAACAAGATTTCACAATCCAAGTCAAAAGAATCCC
TACTTCTGCTTCTACACAAGATGAGATGACAAAACTACaggaaactcaaa
aagtcacCGAAGCTGCTCTAACCAAACCTCAACCATTGACTACATCGACA
GAACCTGAAACAACGAGCTTAAGCCTTTTAACCAATCTTGATCAAGATAT
ACCTGCAAAACTATCGAGTTTGAGCATCAATGAGACAACAGAAACACCAT
TAACTCAAAAAGTCACCGAAGCTGCTTCAACCACACCTAAACCATCGACT
ACATCGGCAGAACCTAAAACAACGAGCTTAAGTCTTTTAACCAATCATGA
TCAAAACATACCAGCAAAACTATCGAGTTTGAGCATCAAGGAGACAACAG
AAACACCACCAACTAAAAAGCCAGCAAAGAAGAAAGCTTCATTCAAATGG
AACGAATGGAACGTCACCTTAGTCATCTTCATGGCAATCGTGTGGCCGTT
AGATGTCATCTTGATCGGTATTTGTCTTCGACGTTGCATAATGAAATATT
GtgCCAATCATAAAAAAGACAAAGACGAGGAAAAGAATTATGAATTAGTT
GACGACAGAAGACAAAGACATCGAAACGCAAACGATGACATCGAAGCACC
CTTACTTGAcagtaataaaaacaaacagaaacgAAGGAACCAAGATACTG
ACTTATACGATCTTGTTCATGGGGAAGACGAACAATCGGTAGGATCTTTT
GATAACGATCAAGAAGACATTGAGCAATACCAACCAACCAAGAAATATGT
CAACATTAAGAACTATGAGAATGTGAACAATATTCCTGATCAAAGTACCA
ATCCAATAGACCATTCACCTTATGAAGATATCACCAACGAGAAAGTGGCT
CTCATTTCTGGTAACGATGACTCCATTCCTCATTATGACCCGAATAAACG
TCAGCAGCTTAATAAGGTTGTGAAGCCGCACCGAGAAGTTGATGCCGTAC
CTCTTTACCAGCCTAGTGTTTCTGAAAACAACTACGAAACTTTACCAAAC
TCCCCTCAAAATGCACCTCCACTAGCTCCAAGAACTGCTCCTTCAACGAA
ACAACCAGAAAATGCGTACGAGCCTGTACCTAATCAAATGAGGAAGCCTG
TACCATACTACCAGCCTGGAAACGGAAAATCTTCAAGCAATTATGATACT
ATTGAGCAAAATTTGAATCAGAAAACTGGAAATAATACTTCAACTTATGA
GCCTGTTGAAAAGTACACCACATCATCTAGTAATCATTACGACAGAATTA
AGGGATGTGCTAGGATAGAGGATGAGAATGGAGTTGTTCCACAGTATACT
CACATAGGAAAAACACCGCCACAGGGAGGTTTTGATGATGGTATTTATGA
TTCTGTCGCTGATAAACCGAACGAACCAGATCATATTAAGGACTTATACG
CCGTTGTCGATAAATCACGTATCAACAAGTAAAAATGATGAATAAGAAGA
ATCTATAGGGACTTGGAAAGGATttatttatcaatattttgcTATCTTTT
TGGGTGggtctttttaccttttttagcgcgtttctttttgtaaatatttt
cttgagaTAACCTAGATTATATACGTCTGCATCTTTtaccccttttttat
ttttttaacatttttattttagattttttttgtacaaaatagTTATGAGT
GAAAACAGAAAACGCCATTACAAAGTAATCATGGCCCATAAATGTCAGAA
ATTT
Run BLAST on NCBI

transcript from alignment at scaffold_462:256022..261440-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066973 ID=TCONS_00066973|Name=TCONS_00066973|organism=Clytia hemisphaerica|type=transcript|length=5419bp|location=Sequence derived from alignment at scaffold_462:256022..261440- (Clytia hemisphaerica)
GAAATGTGTGTTGATTAATAAAGTAGGGTGTGTTTTAAAAGGAATGTCGT
CGTTCACGGGTTGGGAAAGATGATAAGGGAGAGAAAGAAGAAAAACTGAT
TGAGGTTTTGAATTTTTTCCCCAGCCAAGTAATTTTATTTCAGGTTCAAA
CTTATCTTTCGCTTGCGAAAATATAGCACAGCAGCTGAGCAATGCAACAG
CACAGTAAAGGCACCATAGCTCGAAAGACAAGGGGCCGGAATAGTTATAT
TTGTGGGAGATGGCTCACAAAATAAGCTAAAAATACTGTTCGAGTTAATG
TACTACGGAGGTTCAGTTACAGAGGGTTTTATAAAAAGTTTTCACGATAC
CATGAATTTTTTTGAGTTAAGATGACATTCGAGATATAAAGGTTGGAGTA
ACGGTGAACTTTACTGTTCCATATTTGTTTTATGTAGATCAATGTTTTGA
AAAACACGCAAATTTGGTAAATTAGCTAATAGCAAATTTGAAACCAATGA
AATTAGCATGGAAATTCATGATTTTCTTTTCATTGATGGTGGCCAATGGA
AAAGCTGAATTTACCATCAGGCGTGGTGAGAGTGGAATCCCTGATGTTGT
GGTGAAAGATTCACAACAGATGAATTGTACAAAGGATAACCCAACAGCAA
TACCGATATCCAGTGAAGACTTTAAATGTGTGAATCTTACAGCCTTATCA
GAAGGTAAACTTAAAGTAAAGTTAGATAGCGGTAAAAATGTTTTGAAATT
ATCTGGCTTTTCAATCTTGCTTGAGTCAAGTCACGTTTACTTTGCCTGGC
TACTCAAGCCATTATCAAATGATTGCATTATCGCAAACCTCATTCACTTG
GCATTTTATTTCTTATAGAGGGATGTAGTAGCTTTATAACGGCTAGAGGA
CGACAATGTATTAATGTCACAGGAATAGAAACAATCAAAGCCGTCAAAAA
CGTCGTTCAAAACACTGCTACTCGAAAATGGAAGTGGGATACTCTGATTG
ACGAGAATTCAATCTATGGAGACGTACTAACAAAGGATGGTGATGAGATC
GTAAGTATATCTGAATATATGTTCAACAACATAAGCACCGTCTGAATAAA
CGCTCTCTGTAGGAGAGGTGTTTCTTTCAAATAAGTAGCTGTAAAGAATC
GTCATATAAAGGAAAACTTTGTTGAAAATATTTAATAAACGCCCCTTGAA
ATGCCCAAAATGGTCATTGTTATCATTTGAGAACGATAAGAATACAATCG
GACTAGGGCGCCAACTAAATTCTAAAAATTAAAGGATCCGTCCTATTATA
TATAAAATAAACGAGCTAACAAATTTTTCTGTAGTGCTTCAATACAAATG
TTACATACTGGAGTGGACAACTGCTACAATTGTGGTACAGGACGAGTCAA
ACAAATGAGCAATGTGCAATTGTCAAGATACCAGGCGAACGAACATGTAA
AGGCTGTTCTTATCTATTTTTTGAGCCTCAAATTGTTCATATCATGTTCT
TATTTTTGGGCTTTGTACCCTATTTTTACTACTTTGACCATAATTTCAGA
CAAACATTCAGGTTCTCCATCGTTTTTGAACTGTTCTTATTTTTGGCCTT
TTTTGAACATCGTTGTTCTTATAAAAATGTTCTTTAAAAAATGAGAGTAT
CCAATTAGGCAATAATTTCATATTTATCTCATCACACAGATCCAGCCAAT
TTAAATGAACAAGATTTCACAATCCAAGTCAAAAGAATCCCTACTTCTGC
TTCTACACAAGATGAGATGACAAAACTACAGGAAACTCAAAAAGTCACCG
AAGCTGCTCTAACCAAACCTCAACCATTGACTACATCGACAGAACCTGAA
ACAACGAGCTTAAGCCTTTTAACCAATCTTGATCAAGATATACCTGCAAA
ACTATCGAGTTTGAGCATCAATGAGACAACAGAAACACCATTAACTCAAA
AAGTCACCGAAGCTGCTTCAACCACACCTAAACCATCGACTACATCGGCA
GAACCTAAAACAACGAGCTTAAGTCTTTTAACCAATCATGATCAAAACAT
ACCAGCAAAACTATCGAGTTTGAGCATCAAGGAGACAACAGAAACACCAC
CAACTAAAAAGCCAGCAAAGAAGAAAGCTTCATTCAAATGGAACGAATGG
AACGTCACCTTAGTCATCTTCATGGCAATCGTGTGGCCGTTAGATGTCAT
CTTGATCGGTATTTGTCTTCGACGTTGCATAATGAAATATTGGTGAGAAA
AATAATCTTCAAATTTAAGTAGTTTTCTTGTTTGCTGAAGCTATGCCCGC
CATTTCCCGTATTTAATCGCCAAGGTTGTGTCTGCAATTATTAATGAAAA
TGTTCGGATTGGAAGAGCAATTCTTAATGAAGTTCAAATGTCTGTTTCCA
TAATGGCAGAACTGAACCCCAAACTTGAAACAACTTCTTATAGACCGAAT
CCGCAAAGTTCTGTTAGGAAAGGTTTTCAACCAAAACTCAAGCAGGTTGT
CCGTTCCACCCACAACCAAAAACAAGCAACAAAACTATGCGCAGGTCAAT
AAATAAATTTACAGTCTTGAGATGTAACTAAAAAGATATAACGTAACACG
GAATCGGTCTATACAATAAGCTTATTTCAAAACTCTGAAACAGCTAAATT
CTCGCATCAAACTTTACGCTTGCAATTTTTAGTGCATGGCAATAATTAAA
TTATGAACTAATTTTTCTCCTTTCCTTTTTTCTTCACATTTTACTGATTT
TGAAAAATTTCTTGAAATTCTACATCCATCTTTTTTTTCTCAATTCGAAA
GATTATTCTTGCAAATCTCCATTTTTTTTCATTTGACGTATCAGGGATAG
AGCTGGGAACCACTTGCAATTGAGTCGGAAAACCTATCATTACACCAGAC
AGATGATGTAGAGTTTCACGCACTGTAAGCCTAAAATTTGATCCTAATCT
TTCACTTTTCTTTTCTTTTCTTTTCTTATTTTCTTCATACATCCAAACTA
AACCTTCTTCTATAATTGGCTTTTCCAAATAAACAAAAACGTATACCCCA
TGTTGAGGAGGTCCAAGGAGGTCTTATGTGGTCAAACTTTATAGTAATTT
ACAAAAGTTGGTCAAAAATACCAGGNGAGGTCCAAGGAGGTCTTATGTGG
TCAAACTTTATAGTGACTTATAAAAGTTGGTCAAAAATACCTGGAATTCA
ATGGTGTTTAAACTAGAAATTACCTGGAATTCCAGAGGGCTAGATTATTT
CCGGCTACAAAGGGGTTGGACCTCTTCAACAGGGGTTAGTTATATGGTTT
TGACCTAGAAAAACCCATTATTATAATAAACTTTTTTCAAAAAATCAATT
TTGAGATAGAAAACAATACCGTAAATCACCGATTAAGCGCCCGGGCGCTT
ATTTAATTTTTCAGGCTCTGAGGGGGGCGCTTATTCAAGCGGGGCACTTA
TTCAAGCGGGGCGCTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGAAGA
GAAATTCTTATCCCGGAAATTAGCCTAGGCCACCAATTCGAATAAGCGCC
CCTCCCTGGAGGGGGCGCTTATTCAAAGGGGGGCGCTTATTTGAGCGGGG
CGCTTATAAAATTATTTTAACTAAATGGGGGGCGCTTATTCGAGCGGGGC
GCTAATTCAAGCGGGGCGCTTAATCGGTGATTTACTTGTTTTTCTTTCTT
TCAGTGCCAATCATAAAAAAGACAAAGACGAGGAAAAGGTAATAGAGCTT
CTTCACTTTATCATGGAAACACATGTACGTTAGTATGTCTCACTCTACCC
AAGGCTATCTAATTGAGATCTAAATCAAATGAAAAAAATAAAAAAAGCGA
AGCCTAACTATATAGAAATAAATCGCCGTCAAAATTTCAGCGAGTTATCA
AATCGGCGTAATCTATAAATGAACAGTGATATTTTGATACCAAAGTTGAC
AGTGCAGAACACAAAAAGAAAGTATTTTCTATTTCTGTATAATTTTATAG
AATTATGAATTAGTTGACGACAGAAGACAAAGACATCGAAACGCAAACGA
TGACATCGAAGCACCCTTACTTGACAGTAATAAAAACAAACAGAAACGAA
GGAACCAAGATACTGACTTATACGATCTTGTTCATGGGGAAGACGAACAA
TCGGTAGGATCTTTTGATAACGATCAAGAAGACATTGAGCAATACCAACC
AACCAAGAAATATGTCAACATTAAGAACTATGAGAATGTGAACAATATTC
CTGATCAAAGTACCAATCCAATAGACCATTCACCTTATGAAGATATCACC
AACGAGAAAGTGGCTCTCATTTCTGGTAACGATGACTCCATTCCTCATTA
TGACCCGAATAAACGTCAGCAGCTTAATAAGGTTGTGAAGCCGCACCGAG
AAGTTGATGCCGTACCTCTTTACCAGCCTAGTGTTTCTGAAAACAACTAC
GAAACTTTACCAAACTCCCCTCAAAATGCACCTCCACTAGCTCCAAGAAC
TGCTCCTTCAACGAAACAACCAGAAAATGCGTACGAGCCTGTACCTAATC
AAATGAGGAAGCCTGTACCATACTACCAGCCTGGAAACGGAAAATCTTCA
AGCAATTATGATACTATTGAGCAAAATTTGAATCAGAAAACTGGAAATAA
TACTTCAACTTATGAGCCTGTTGAAAAGTACACCACATCATCTAGTAATC
ATTACGACAGAATTAAGGGATGTGCTAGGATAGAGGATGAGAATGGAGTT
GTTCCACAGTATACTCACATAGGAAAAACACCGCCACAGGGAGGTTTTGA
TGATGGTATTTATGATTCTGTCGCTGATAAACCGAACGAACCAGATCATA
TTAAGGACTTATACGCCGTTGTCGATAAATCACGTATCAACAAGTAAAAA
TGATGAATAAGAAGAATCTATAGGGACTTGGAAAGGATTTATTTATCAAT
ATTTTGCTATCTTTTTGGGTGGGTCTTTTTACCTTTTTTAGCGCGTTTCT
TTTTGTAAATATTTTCTTGAGATAACCTAGATTATATACGTCTGCATCTT
TTACCCCTTTTTTATTTTTTTAACATTTTTATTTTAGATTTTTTTTGTAC
AAAATAGTTATGAGTGAAAACAGAAAACGCCATTACAAAGTAATCATGGC
CCATAAATGTCAGAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041847XLOC_041847Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066973-exon-scaffold_462-1575043694:260737..261440TCONS_00066973-exon-scaffold_462-1575043694:260737..261440Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1575043694:260391..260572TCONS_00066973-exon-scaffold_462-1575043694:260391..260572Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1575043694:259995..260106TCONS_00066973-exon-scaffold_462-1575043694:259995..260106Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1575043694:259199..259751TCONS_00066973-exon-scaffold_462-1575043694:259199..259751Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1575043694:257453..257486TCONS_00066973-exon-scaffold_462-1575043694:257453..257486Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1575043694:256022..257190TCONS_00066973-exon-scaffold_462-1575043694:256022..257190Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1510915933:260737..261440TCONS_00066973-exon-scaffold_462-1510915933:260737..261440Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1510915933:260391..260572TCONS_00066973-exon-scaffold_462-1510915933:260391..260572Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1510915933:259995..260106TCONS_00066973-exon-scaffold_462-1510915933:259995..260106Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1510915933:259199..259751TCONS_00066973-exon-scaffold_462-1510915933:259199..259751Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1510915933:257453..257486TCONS_00066973-exon-scaffold_462-1510915933:257453..257486Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1510915933:256022..257190TCONS_00066973-exon-scaffold_462-1510915933:256022..257190Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1491911889:260737..261440TCONS_00066973-exon-scaffold_462-1491911889:260737..261440Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1491911889:260391..260572TCONS_00066973-exon-scaffold_462-1491911889:260391..260572Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1491911889:259995..260106TCONS_00066973-exon-scaffold_462-1491911889:259995..260106Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1491911889:259199..259751TCONS_00066973-exon-scaffold_462-1491911889:259199..259751Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1491911889:257453..257486TCONS_00066973-exon-scaffold_462-1491911889:257453..257486Clytia hemisphaericaexon
TCONS_00066973-exon-scaffold_462-1491911889:256022..257190TCONS_00066973-exon-scaffold_462-1491911889:256022..257190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:256022..261440 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0679693	0.0473513	0.0308839	0	0.0594212	1.77744	2.61083	2.04159	4.4178	1.7112	0.624589	4.14951	5.16634	5.68359	5.76508	2.70928	3.56234	4.9464	7.95823	3.66333	1.05894	2.2791	1.83807	2.43623	5.05274	11.3331	6.88267	3.46374	4.14826
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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