TCONS_00066968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066968
Unique NameTCONS_00066968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066968 ID=TCONS_00066968|Name=TCONS_00066968|organism=Clytia hemisphaerica|type=transcript|length=1400bp
TAAAGCCAGACAGATTTTCAGTGATTTTTTGATATTGTGATTAGCTTGGT
AGTTTCATTTTAAGGGTTTTTCTTTATAGAAACAGATCACTTTGGTATTG
GAAGTTTATCAGCTTGAATCACGCGATTTATGTTTGGCTAACGCGTTTCG
AGCCTTTCGAGAGAGATTCTTCTCTCACTATCTAATTTTTGGTTTTCCTT
TCGCCAGAAATGACGTTATTGCTGTGAGCAATTAACAGTTGAATTTGCTG
CTCATAATAACAGTTTAAAAAACAGGAAATCAATGTTGTGTTAACATGCT
GGCTTGAGCTTTCACTTTTGTAGAAAATTTTAACTGGACGTGACGTGGTC
GTGCTGTAGTTAGGTTTTTTTACTTCATTatacttttacttttatttatt
ttaggtTTAGATTACATAGAGTCACTGATACGTGATATCATTTGAATGTT
GGTTTGGATGATGTTTTCAAATCATAATTGTTTAACTTGAAAGATTTTAC
TTCCTCCTAGATTGATCGTTATTTACTGGAACAAGAGGAAAGATTGTTAA
ATGTTCCAGTCATTATCatagaaaatacaagaaaatattAGACTTAGGCA
ATAACAAGCATAAACTGGGCAGACTGAACACTTAAGAACAATGACTTTGC
AAATGAAGAACAGAAGAATTTTGTGCGTCTatgcttttgtttctttccac
gTATTGGGAAGCATAAACGGTAACTTTATCATTGAGAGAAAAATTGGCGA
CTCGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTC
TTGCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAAC
AAGGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAA
AAAGATTAGTTGCTATACTGAAGGTGAATTACAATCAGAATGTGGAAGCA
CTAATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAATCCCT
ACGAGATGTTCAAGCGCTGGAtgggaaaatataaaaatatgggGTTTCAA
AGAGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAAAGAA
ACATTAGATTGTCCAGCAGAGCGTTAATCCTCTACCATACGCCAGTTCAA
TAGACGACCTGGTGAAAAATCTTAAGCAAATCGACGATGGATACCCAATA
GGAGCAACACCACCCACACCAGGGAGAAACACAAGATCACCAGTAACAAG
AGATGACGAATCTTCAAATAACAGTGGTCTCATTATTGGCATCGTATTTG
GTATATTTGTTGTCATCTTTGCAATGGTTCTGGCATTCTTCTTGTATAGG
AGacGTAAAAGAAGCCGCCGAGCCAAGAAACAAACGCTCTCACCCGTATA
Run BLAST on NCBI

transcript from alignment at scaffold_462:244761..248042-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066968 ID=TCONS_00066968|Name=TCONS_00066968|organism=Clytia hemisphaerica|type=transcript|length=3282bp|location=Sequence derived from alignment at scaffold_462:244761..248042- (Clytia hemisphaerica)
TAAAGCCAGACAGATTTTCAGTGATTTTTTGATATTGTGATTAGCTTGGT
AGTTTCATTTTAAGGGTTTTTCTTTATAGAAACAGATCACTTTGGTATTG
GAAGTTTATCAGCTTGAATCACGCGATTTATGTTTGGCTAACGCGTTTCG
AGCCTTTCGAGAGAGATTCTTCTCTCACTATCTAATTTTTGGTTTTCCTT
TCGCCAGAAATGACGTTATTGCTGTGAGCAATTAACAGTTGAATTTGCTG
CTCATAATAACAGTTTAAAAAACAGGAAATCAATGTTGTGTTAACATGCT
GGCTTGAGCTTTCACTTTTGTAGAAAATTTTAACTGGACGTGACGTGGTC
GTGCTGTAGTTAGGTTTTTTTACTTCATTATACTTTTACTTTTATTTATT
TTAGGTTTAGATTACATAGAGTCACTGATACGTGATATCATTTGAATGTT
GGTTTGGATGATGTTTTCAAATCATAATTGTTTAACTTGAAAGATTTTAC
TTCCTCCTAGATTGATCGTTATTTACTGGAACAAGAGGAAAGATTGTTAA
ATGTTCCAGTCATTATCATAGAAAATACAAGAAAATATTAGACTTAGGCA
ATAACAAGCATAAACTGGGCAGACTGAACACTTAAGAACAATGACTTTGC
AAATGAAGAACAGAAGAATTTTGTGCGTCTATGCTTTTGTTTCTTTCCAC
GTATTGGGAAGCATAAACGGTAACTTTATCATTGAGAGAAAAATTGGCGA
CTCGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTC
TTGCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAAC
AAGGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAA
AAAGATTAGTTGCTATACTGAAGGTGAATTACAATCAGGTAAGACTTAAA
AATATGGTTTGAGAAAATGAAATGAAAGTAGTGGTTAGTAGAACTCCTTT
AATGTATCAAATTAGTTATTAAAGGTCACGGAAAAAACTCTAGCCTGAGT
AAAGTGTATTCTAGCGGTAAGGACTGTTGTAGCCTGGTCACTATGAGGTA
AACAATGTAAGTGATGCATTTTCTAGAATTGTGTAAACTATCATTTTGCA
AGTGACCCCTTTTAAAATCCATCAAGTGACTTAATGATTACGATGGGAGT
GACTTTATTTCTTAATAAGAATCCCATGATATAGTTGTGGTATACCGAGA
ATCCTTAGCTTTTAAGTCAACTGAAGCATACAGTATATGCCATAGGCTTC
TGCTCATACTCCGATGAAAGTTCCTTATAGGAAGTACATCAATAGAGGTC
TGCGAATCAAACTAATTAAAACCATATTCAATAAATCTTCAGAATGTGGA
AGCACTAATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAAT
CCCTACGAGATGTTCAAGCGCTGGATGGGAAAATATAAAAATATGGGGTT
TCAAAGAGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAA
AGAAACATTAGATTGTCCAGCAGAGCGTTAGTAAGTATCATGAATGAGTT
TGATTACTTTGATTTTACGCTTAATCTTTCTGAAATTATCACCAGTCTGG
AATCAGTCTATTTGCTTTAGGCAAGCATTCATTTTAGCGAATGTAGTACA
AAGGTAGAGCCTTCTACTATGGTATGCAAGGTCGTGGGTTCAATCCCGCC
CGAGTCATATCAAAAACTTCGTAGTAGTACAAAATGGTACTTGATGCTTT
GTGTTATACAATTAAAGAGAAGGATCAAGGGTGAGTGGAGCATTTCATGG
AGAAAGAGTAGCGCCCTCTCCTACCTTCGGGGAAAATTCGACAATAAAGG
TTTATTATATAACCATTGAAAAAAGAAATTATTTGGTAAAACGCCTTATA
ATACCATTCTTTACAGAATTTCGATAATCGAAGAAAATTGGATGGACTTT
TAGGAGTTATCACGTACACATGTCCAAATGGAAATGTTTACTGTGATGTT
CTTAAGTTTGCTGGAGCGGCTAAATGTAAGTGGGAAAACTTTTCTTTAAC
GTCATCAATTGGAAGAGTGCTTTTTAAAGCTCAGGTTTAATCAAAATTTA
TTTTGAAATACAACTTTATTGAATTCGCTCTACGAAGAGTATTGAGCACT
CTTTTAATAGTTGTTCAACAAAAACATTATTGTTTTCGCCTCAAAAATGG
CGTGATATGTTGGGAATTAACACCACGGTTATTACAAGTCGCCTCCATTC
TAGATAGGTAAAAGTCTACTAATTCTCTTAGCAAAGCGTCTACCACAAGC
AAAGTGTTGAGTCTCTCTATACCTCGAACCCGCACGGAAAACACAAAATT
GTTTGAATTAAGGTTCAAAAGGTGTTGTTAATTGGAGGGACAAGAAAACT
TGTCCGAGTTAAGGAAACATTCGATTTATAGAGGTTCAATTTCTTTTAAA
ATGTTCTATAGATCCTCTACCATACGCCAGTTCAATAGACGACCTGGTGA
AAAATCTTAAGCAAATCGACGATGGATACCCAATAGGAGCAACACCACCC
ACACCAGGGAGAAACACAAGATCACCAGTAACAAGAGATGACGAATCTTC
AAATAACAGTGGTCTCATTATTGGCATCGTATTTGGTATATTTGTTGTCA
TCTTTGCAATGGTTCTGGCATTCTTCTTGTATAGGAGGTAAAAAAATCTT
ACACAATCAAATATAAACACTTACAATGTCACAAAAGTTGCCAAAAGGCG
TACTGATCCCCATTTCTCGAAGCTGAGAATAAACTGGAGCCCAACCCTTA
CAATCCTTACTTTCAGCAAAAAGTTGACACTTAGAGAGACATTCGATTTA
GAAGATGAAAAACCAGACCCTTTAAGCACGCACATAACCAGCACCAATTT
GTGCCTAAGTATCCCCCCCCCCTTCGGGGGTTATTAGCGAGTTTATGTAT
TTGCATTTTTGAGGACGCGGTAAAGTGACTGAAGCGATCTGGAAAAACCC
ACAGTTCTGACCAGCAAAATCGAGGACGGTAAAAGTGCTGATTTACCGTC
GTCCTCACTTAGTCAGGATCTAGTCAAGTTAGAACCTTATCGTCTCCGTC
GCAGAAAAACACACATGCATAAACTCGGTATTGAAAAGGTGCCTTTCATG
CATGAATCACAGTATTATTTTCTTTTTCTTCAAGACGTAAAAGAAGCCGC
CGAGCCAAGAAACAAACGCTCTCACCCGTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041845XLOC_041845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066968-exon-scaffold_462-1575043694:247105..248042TCONS_00066968-exon-scaffold_462-1575043694:247105..248042Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1575043694:246463..246650TCONS_00066968-exon-scaffold_462-1575043694:246463..246650Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1575043694:245306..245531TCONS_00066968-exon-scaffold_462-1575043694:245306..245531Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1575043694:244761..244808TCONS_00066968-exon-scaffold_462-1575043694:244761..244808Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1510915933:247105..248042TCONS_00066968-exon-scaffold_462-1510915933:247105..248042Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1510915933:246463..246650TCONS_00066968-exon-scaffold_462-1510915933:246463..246650Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1510915933:245306..245531TCONS_00066968-exon-scaffold_462-1510915933:245306..245531Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1510915933:244761..244808TCONS_00066968-exon-scaffold_462-1510915933:244761..244808Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1491911889:247105..248042TCONS_00066968-exon-scaffold_462-1491911889:247105..248042Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1491911889:246463..246650TCONS_00066968-exon-scaffold_462-1491911889:246463..246650Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1491911889:245306..245531TCONS_00066968-exon-scaffold_462-1491911889:245306..245531Clytia hemisphaericaexon
TCONS_00066968-exon-scaffold_462-1491911889:244761..244808TCONS_00066968-exon-scaffold_462-1491911889:244761..244808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:244761..248042 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	5.0229e-09	0	0	0	0	0	0	0	0	0	0	0.222932	2.61403e-05	0	0	0	0	0	0.236415	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top