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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066967 ID=TCONS_00066967|Name=TCONS_00066967|organism=Clytia hemisphaerica|type=transcript|length=1579bp
CGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTCTT
GCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAACAA
GGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAAAA
AGATTAGTTGCTATACTGAAGGTGAATTACAATCAGAATGTGGAAGCACT
AATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAATCCCTAC
GAGATGTTCAAGCGCTGGAtgggaaaatataaaaatatgggGTTTCAAAG
AGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAAAGAAAC
ATTAGATTGTCCAGCAGAGCGTTAGTAAGTATCATGAATGAGTTTGATTA
CTTTGATTTTACGCTTAATCTTTCTGAAATTATCACCAGTCTGGAATCAG
TCTATTTGCTTTAGGCAAGCATTCATTTTAGCGAATGTAGTACAAAGGTA
GAGCCTTCTACTATGGTATgcaaggtcgtgggttcaatcccgCCCGAGTC
ATATCAAAAACTTCGTAGTAgtacaaaatggtacttgatgctttGTGTTA
TACAattaaagagaaggatcaagggtgaGTGGAGCATTTCATGGAGAAAG
AGTAGCGCCCTCTCCTACCTTCGGGGAAAATTCGACAATAAAGGTTTATT
ATATAaccattgaaaaaagaaattatttggtAAAACGCCTTATAATACCA
TTCTTTACAGAATTTCGATAATCGAAGAAAATTGGATGGACTTTTAGGAG
TTATCACGTACACATGTCCAAATGGAAATGTTTACTGTGATGTTCTTAAG
TTTGCTGGAGCGGCTAAATGTAAGTGGGAAAACTTTTCTTTAACGTCATC
AATTGGAAGAGTGCTTTTTAAAGCTCAGgtttaatcaaaatttattttga
aatacaaCTTTATTGAATTCGCTCTACGAAGAGTATTGAGCACTCTTTTA
ATAGTTGttcaacaaaaacattattgtttTCGCCTCAAAAATGGCGTGAT
ATGTTGGGAATTAACACCACGGTTATTACAAGTCGCCTCCATTCTAGATA
GGTAAAAGTCTACTAATTCTCTTAGCAAAGCGTCTACCACAAGCAAAGTG
TTGAGTCTCTCTATACCTCGAACCCGCACGGAAAACACAAAATTGTTTGA
ATTAAGGTTCAAAAGGTGTTGTTAATTGGAGGGACAAGAAAACTTGTCcg
agttaaggaaacattcgatttatagaggttcaatttcttttaaaatgttc
tatAGATCCTCTACCATACGCCAGTTCAATAGACGACCTGGTGAAAAATC
TTAAGCAAATCGACGATGGATACCCAATAGGAGCAACACCACCCACACCA
GGGAGAAACACAAGATCACCAGTAACAAGAGATGACGAATCTTCAAATAA
CAGTGGTCTCATTATTGGCATCGTATTTGGTATATTTGTTGTCATCTTTG
CAATGGTTCTGGCATTCTTCTTGTATAGGAGacGTAAAAGAAGCCGCCGA
GCCAAGAAACAAACGCTCTCACCCGTATA Run BLAST on NCBI transcript from alignment at scaffold_462:244761..247290- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066967 ID=TCONS_00066967|Name=TCONS_00066967|organism=Clytia hemisphaerica|type=transcript|length=2530bp|location=Sequence derived from alignment at scaffold_462:244761..247290- (Clytia hemisphaerica)
CGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTCTT
GCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAACAA
GGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAAAA
AGATTAGTTGCTATACTGAAGGTGAATTACAATCAGGTAAGACTTAAAAA
TATGGTTTGAGAAAATGAAATGAAAGTAGTGGTTAGTAGAACTCCTTTAA
TGTATCAAATTAGTTATTAAAGGTCACGGAAAAAACTCTAGCCTGAGTAA
AGTGTATTCTAGCGGTAAGGACTGTTGTAGCCTGGTCACTATGAGGTAAA
CAATGTAAGTGATGCATTTTCTAGAATTGTGTAAACTATCATTTTGCAAG
TGACCCCTTTTAAAATCCATCAAGTGACTTAATGATTACGATGGGAGTGA
CTTTATTTCTTAATAAGAATCCCATGATATAGTTGTGGTATACCGAGAAT
CCTTAGCTTTTAAGTCAACTGAAGCATACAGTATATGCCATAGGCTTCTG
CTCATACTCCGATGAAAGTTCCTTATAGGAAGTACATCAATAGAGGTCTG
CGAATCAAACTAATTAAAACCATATTCAATAAATCTTCAGAATGTGGAAG
CACTAATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAATCC
CTACGAGATGTTCAAGCGCTGGATGGGAAAATATAAAAATATGGGGTTTC
AAAGAGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAAAG
AAACATTAGATTGTCCAGCAGAGCGTTAGTAAGTATCATGAATGAGTTTG
ATTACTTTGATTTTACGCTTAATCTTTCTGAAATTATCACCAGTCTGGAA
TCAGTCTATTTGCTTTAGGCAAGCATTCATTTTAGCGAATGTAGTACAAA
GGTAGAGCCTTCTACTATGGTATGCAAGGTCGTGGGTTCAATCCCGCCCG
AGTCATATCAAAAACTTCGTAGTAGTACAAAATGGTACTTGATGCTTTGT
GTTATACAATTAAAGAGAAGGATCAAGGGTGAGTGGAGCATTTCATGGAG
AAAGAGTAGCGCCCTCTCCTACCTTCGGGGAAAATTCGACAATAAAGGTT
TATTATATAACCATTGAAAAAAGAAATTATTTGGTAAAACGCCTTATAAT
ACCATTCTTTACAGAATTTCGATAATCGAAGAAAATTGGATGGACTTTTA
GGAGTTATCACGTACACATGTCCAAATGGAAATGTTTACTGTGATGTTCT
TAAGTTTGCTGGAGCGGCTAAATGTAAGTGGGAAAACTTTTCTTTAACGT
CATCAATTGGAAGAGTGCTTTTTAAAGCTCAGGTTTAATCAAAATTTATT
TTGAAATACAACTTTATTGAATTCGCTCTACGAAGAGTATTGAGCACTCT
TTTAATAGTTGTTCAACAAAAACATTATTGTTTTCGCCTCAAAAATGGCG
TGATATGTTGGGAATTAACACCACGGTTATTACAAGTCGCCTCCATTCTA
GATAGGTAAAAGTCTACTAATTCTCTTAGCAAAGCGTCTACCACAAGCAA
AGTGTTGAGTCTCTCTATACCTCGAACCCGCACGGAAAACACAAAATTGT
TTGAATTAAGGTTCAAAAGGTGTTGTTAATTGGAGGGACAAGAAAACTTG
TCCGAGTTAAGGAAACATTCGATTTATAGAGGTTCAATTTCTTTTAAAAT
GTTCTATAGATCCTCTACCATACGCCAGTTCAATAGACGACCTGGTGAAA
AATCTTAAGCAAATCGACGATGGATACCCAATAGGAGCAACACCACCCAC
ACCAGGGAGAAACACAAGATCACCAGTAACAAGAGATGACGAATCTTCAA
ATAACAGTGGTCTCATTATTGGCATCGTATTTGGTATATTTGTTGTCATC
TTTGCAATGGTTCTGGCATTCTTCTTGTATAGGAGGTAAAAAAATCTTAC
ACAATCAAATATAAACACTTACAATGTCACAAAAGTTGCCAAAAGGCGTA
CTGATCCCCATTTCTCGAAGCTGAGAATAAACTGGAGCCCAACCCTTACA
ATCCTTACTTTCAGCAAAAAGTTGACACTTAGAGAGACATTCGATTTAGA
AGATGAAAAACCAGACCCTTTAAGCACGCACATAACCAGCACCAATTTGT
GCCTAAGTATCCCCCCCCCCTTCGGGGGTTATTAGCGAGTTTATGTATTT
GCATTTTTGAGGACGCGGTAAAGTGACTGAAGCGATCTGGAAAAACCCAC
AGTTCTGACCAGCAAAATCGAGGACGGTAAAAGTGCTGATTTACCGTCGT
CCTCACTTAGTCAGGATCTAGTCAAGTTAGAACCTTATCGTCTCCGTCGC
AGAAAAACACACATGCATAAACTCGGTATTGAAAAGGTGCCTTTCATGCA
TGAATCACAGTATTATTTTCTTTTTCTTCAAGACGTAAAAGAAGCCGCCG
AGCCAAGAAACAAACGCTCTCACCCGTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066967-exon-scaffold_462-1575043694:247105..247290 | TCONS_00066967-exon-scaffold_462-1575043694:247105..247290 | Clytia hemisphaerica | exon |
| TCONS_00066967-exon-scaffold_462-1575043694:245306..246650 | TCONS_00066967-exon-scaffold_462-1575043694:245306..246650 | Clytia hemisphaerica | exon |
| TCONS_00066967-exon-scaffold_462-1575043694:244761..244808 | TCONS_00066967-exon-scaffold_462-1575043694:244761..244808 | Clytia hemisphaerica | exon |
| TCONS_00066967-exon-scaffold_462-1510915933:247105..247290 | TCONS_00066967-exon-scaffold_462-1510915933:247105..247290 | Clytia hemisphaerica | exon |
| TCONS_00066967-exon-scaffold_462-1510915933:245306..246650 | TCONS_00066967-exon-scaffold_462-1510915933:245306..246650 | Clytia hemisphaerica | exon |
| TCONS_00066967-exon-scaffold_462-1510915933:244761..244808 | TCONS_00066967-exon-scaffold_462-1510915933:244761..244808 | Clytia hemisphaerica | exon |
| TCONS_00066967-exon-scaffold_462-1491911889:247105..247290 | TCONS_00066967-exon-scaffold_462-1491911889:247105..247290 | Clytia hemisphaerica | exon |
| TCONS_00066967-exon-scaffold_462-1491911889:245306..246650 | TCONS_00066967-exon-scaffold_462-1491911889:245306..246650 | Clytia hemisphaerica | exon |
| TCONS_00066967-exon-scaffold_462-1491911889:244761..244808 | TCONS_00066967-exon-scaffold_462-1491911889:244761..244808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:244761..247290 - |
Blast
The following BLAST results are available for this feature:
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