Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066965 ID=TCONS_00066965|Name=TCONS_00066965|organism=Clytia hemisphaerica|type=transcript|length=3596bp TAAAGCCAGACAGATTTTCAGTGATTTTTTGATATTGTGATTAGCTTGGT AGTTTCATTTTAAGGGTTTTTCTTTATAGAAACAGATCACTTTGGTATTG GAAGTTTATCAGCTTGAATCACGCGATTTATGTTTGGCTAACGCGTTTCG AGCCTTTCGAGAGAGATTCTTCTCTCACTATCTAATTTTTGGTTTTCCTT TCGCCAGAAATGACGTTATTGCTGTGAGCAATTAACAGTTGAATTTGCTG CTCATAATAACAGTTTAAAAAACAGGAAATCAATGTTGTGTTAACATGCT GGCTTGAGCTTTCACTTTTGTAGAAAATTTTAACTGGACGTGACGTGGTC GTGCTGTAGTTAGGTTTTTTTACTTCATTatacttttacttttatttatt ttaggtTTAGATTACATAGAGTCACTGATACGTGATATCATTTGAATGTT GGTTTGGATGATGTTTTCAAATCATAATTGTTTAACTTGAAAGATTTTAC TTCCTCCTAGATTGATCGTTATTTACTGGAACAAGAGGAAAGATTGTTAA ATGTTCCAGTCATTATCatagaaaatacaagaaaatattAGACTTAGGCA ATAACAAGCATAAACTGGGCAGACTGAACACTTAAGAACAATGACTTTGC AAATGAAGAACAGAAGAATTTTGTGCGTCTatgcttttgtttctttccac gTATTGGGAAGCATAAACGGTAACTTTATCATTGAGAGAAAAATTGGCGA CTCGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTC TTGCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAAC AAGGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAA AAAGATTAGTTGCTATACTGAAGGTGAATTACAATCAGAATGTGGAAGCA CTAATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAATCCCT ACGAGATGTTCAAGCGCTGGAtgggaaaatataaaaatatgggGTTTCAA AGAGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAAAGAA ACATTAGATTGTCCAGCAGAGCGTTAAATTTCGATAATCGAAGAAAATTG GATGGACTTTTAGGAGTTATCACGTACACATGTCCAAATGGAAATGTTTA CTGTGATGTTCTTAAGTTTGCTGGAGCGGCTAAATGTAAGTGGGAAAACT TTTCTTTAACGTCATCAATTGGAAGAGTGCTTTTTAAAGCTCAGgtttaa tcaaaatttattttgaaatacaaCTTTATTGAATTCGCTCTACGAAGAGT ATTGAGCACTCTTTTAATAGTTGttcaacaaaaacattattgtttTCGCC TCAAAAATGGCGTGATATGTTGGGAATTAACACCACGGTTATTACAAGTC GCCTCCATTCTAGATAGGTAAAAGTCTACTAATTCTCTTAGCAAAGCGTC TACCACAAGCAAAGTGTTGAGTCTCTCTATACCTCGAACCCGCACGGAAA ACACAAAATTGTTTGAATTAAGGTTCAAAAGGTGTTGTTAATTGGAGGGA CAAGAAAACTTGTCcgagttaaggaaacattcgatttatagaggttcaat ttcttttaaaatgttctatAGATCCTCTACCATACGCCAGTTCAATAGAC GACCTGGTGAAAAATCTTAAGCAAATCGACGATGGATACCCAATAGGAGC AACACCACCCACACCAGGGAGAAACACAAGATCACCAGTAACAAGAGATG ACGAATCTTCAAATAACAGTGGTCTCATTATTGGCATCGTATTTGGTATA TTTGTTGTCATCTTTGCAATGGTTCTGGCATTCTTCTTGTATAGGAGacG TAAAAGAAGCCGCCGAGCCAAGAAACAAACGCTCTCACCCGTATACGCAA AATGTGAAGTCGACATCAACTCAACAAATGGAGAAGAAGAAAGCAAACTC ATACACCAGTATACCGACTCCAATGCATACGCTTTACCGTCAAACCCACA ACCTGAGTACCGTGAAATCGAACCTGAAATTCGCTATTCACCTAGAAATA ATCATGTTTCCATGGAGACTCCGAAACAAAACAACAGCCATTATGTGTCA GCGACTTCTACACAAACCAATAGCAAGCAAAAGGGACTTGAAGCTGAGTA CCAGACCCCTGATATAGTGCCATCACCACAAAATAGAATCACATCTGAGA TAAGCATAACAAAAGACAATATTACCGATGAAGCACTAGATTATAGCGTT CCTGATAAAACTGGaaagtcaaaatctaaaaacaatACTAAAAATGATAC GCCTTACAAAGAACATTCTGTAGGATATAGCGTTCCTGATAAAACTGGAG ACTCGGAATGGAAAGACTATACTGAAAACGTGAAAGAATCTTCGCCAGAA TATAGTGTTCCAGGATCATCGGTAGATCATGTAGACAGTGGAGCTGCCGA TGACGAAACAACACCTTTAAAGGGGTATAGTGAGCCGGGACAAATAATAG ATAATGGTAAAAGTGATAATGATAATGATGATGACGATGACGAAGTTAAT TATTACAGTACACCAGTAACCAGTGAAACGGATGCATTGGTGAGACCGAA TTCAGCATTGTACGCTAAAGTGAATAAAAATACGAAGAGATAGGGGACTT TGAGAAAGTTAAGCTTGAATATCAAAGTATgtaaattttaaagctttgca ttggcttcaaaaggaaattttgaagaaatttaaaATACCTTCTTCTCATA GAGCATTTAATGACatttgttaaccggttacttctTCAAAGCAGGCTACA CGGCtatttgcgcaatgcaattggttcttttcgcgtgacgacgggcctac attgcccagagttgcccgtcgttaggaaaattcgtTGACatcaatgcgtt gacatcatgtctctcaatttttatttctgacgtcagaaattataaaaatt tttgatctcttttcgcttgtatttttcactttagttcgctatttttcctg aataaagcgctaaaaatcaatcgaagctgaaggaaacggttaataaatac aataatgaccggttttttcggctgtactgaaaatattgccctcggtcgac gcaacaacctcgcaagctcggtcattacttgacctcgggcaatatttctc agtacagcccttaCTAACCAGTCTTTATTGTATTAGTGTAATATATGTAT ACAAAATGATGTAAGATAAAAGTTTGCGTTGGCTTCGAAaggaaaatttc aagaaatttttataaaatacttttccaaaaaaaattaacaaagaaaagca agaaaaacCACATAAGatttaattcaattttactACTACTATATTGAGTT TCAAATTGCACATAACCTCCTGCTCTCTTAGAATCACTTTTAAGTAATTT ACAACAATATCCCGGGGGAGGGGACGTGTCACTGGTCAGAgttccttttt taggctctgaagatatctgacagggttccAGATAGATTTCCAAAATATGT ATCCGACAGGGGCGACTattgggaatttttgaaaattcatagggtg Run BLAST on NCBI transcript from alignment at scaffold_462:242567..248042- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066965 ID=TCONS_00066965|Name=TCONS_00066965|organism=Clytia hemisphaerica|type=transcript|length=5476bp|location=Sequence derived from alignment at scaffold_462:242567..248042- (Clytia hemisphaerica) TAAAGCCAGACAGATTTTCAGTGATTTTTTGATATTGTGATTAGCTTGGT
AGTTTCATTTTAAGGGTTTTTCTTTATAGAAACAGATCACTTTGGTATTG
GAAGTTTATCAGCTTGAATCACGCGATTTATGTTTGGCTAACGCGTTTCG
AGCCTTTCGAGAGAGATTCTTCTCTCACTATCTAATTTTTGGTTTTCCTT
TCGCCAGAAATGACGTTATTGCTGTGAGCAATTAACAGTTGAATTTGCTG
CTCATAATAACAGTTTAAAAAACAGGAAATCAATGTTGTGTTAACATGCT
GGCTTGAGCTTTCACTTTTGTAGAAAATTTTAACTGGACGTGACGTGGTC
GTGCTGTAGTTAGGTTTTTTTACTTCATTATACTTTTACTTTTATTTATT
TTAGGTTTAGATTACATAGAGTCACTGATACGTGATATCATTTGAATGTT
GGTTTGGATGATGTTTTCAAATCATAATTGTTTAACTTGAAAGATTTTAC
TTCCTCCTAGATTGATCGTTATTTACTGGAACAAGAGGAAAGATTGTTAA
ATGTTCCAGTCATTATCATAGAAAATACAAGAAAATATTAGACTTAGGCA
ATAACAAGCATAAACTGGGCAGACTGAACACTTAAGAACAATGACTTTGC
AAATGAAGAACAGAAGAATTTTGTGCGTCTATGCTTTTGTTTCTTTCCAC
GTATTGGGAAGCATAAACGGTAACTTTATCATTGAGAGAAAAATTGGCGA
CTCGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTC
TTGCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAAC
AAGGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAA
AAAGATTAGTTGCTATACTGAAGGTGAATTACAATCAGGTAAGACTTAAA
AATATGGTTTGAGAAAATGAAATGAAAGTAGTGGTTAGTAGAACTCCTTT
AATGTATCAAATTAGTTATTAAAGGTCACGGAAAAAACTCTAGCCTGAGT
AAAGTGTATTCTAGCGGTAAGGACTGTTGTAGCCTGGTCACTATGAGGTA
AACAATGTAAGTGATGCATTTTCTAGAATTGTGTAAACTATCATTTTGCA
AGTGACCCCTTTTAAAATCCATCAAGTGACTTAATGATTACGATGGGAGT
GACTTTATTTCTTAATAAGAATCCCATGATATAGTTGTGGTATACCGAGA
ATCCTTAGCTTTTAAGTCAACTGAAGCATACAGTATATGCCATAGGCTTC
TGCTCATACTCCGATGAAAGTTCCTTATAGGAAGTACATCAATAGAGGTC
TGCGAATCAAACTAATTAAAACCATATTCAATAAATCTTCAGAATGTGGA
AGCACTAATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAAT
CCCTACGAGATGTTCAAGCGCTGGATGGGAAAATATAAAAATATGGGGTT
TCAAAGAGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAA
AGAAACATTAGATTGTCCAGCAGAGCGTTAGTAAGTATCATGAATGAGTT
TGATTACTTTGATTTTACGCTTAATCTTTCTGAAATTATCACCAGTCTGG
AATCAGTCTATTTGCTTTAGGCAAGCATTCATTTTAGCGAATGTAGTACA
AAGGTAGAGCCTTCTACTATGGTATGCAAGGTCGTGGGTTCAATCCCGCC
CGAGTCATATCAAAAACTTCGTAGTAGTACAAAATGGTACTTGATGCTTT
GTGTTATACAATTAAAGAGAAGGATCAAGGGTGAGTGGAGCATTTCATGG
AGAAAGAGTAGCGCCCTCTCCTACCTTCGGGGAAAATTCGACAATAAAGG
TTTATTATATAACCATTGAAAAAAGAAATTATTTGGTAAAACGCCTTATA
ATACCATTCTTTACAGAATTTCGATAATCGAAGAAAATTGGATGGACTTT
TAGGAGTTATCACGTACACATGTCCAAATGGAAATGTTTACTGTGATGTT
CTTAAGTTTGCTGGAGCGGCTAAATGTAAGTGGGAAAACTTTTCTTTAAC
GTCATCAATTGGAAGAGTGCTTTTTAAAGCTCAGGTTTAATCAAAATTTA
TTTTGAAATACAACTTTATTGAATTCGCTCTACGAAGAGTATTGAGCACT
CTTTTAATAGTTGTTCAACAAAAACATTATTGTTTTCGCCTCAAAAATGG
CGTGATATGTTGGGAATTAACACCACGGTTATTACAAGTCGCCTCCATTC
TAGATAGGTAAAAGTCTACTAATTCTCTTAGCAAAGCGTCTACCACAAGC
AAAGTGTTGAGTCTCTCTATACCTCGAACCCGCACGGAAAACACAAAATT
GTTTGAATTAAGGTTCAAAAGGTGTTGTTAATTGGAGGGACAAGAAAACT
TGTCCGAGTTAAGGAAACATTCGATTTATAGAGGTTCAATTTCTTTTAAA
ATGTTCTATAGATCCTCTACCATACGCCAGTTCAATAGACGACCTGGTGA
AAAATCTTAAGCAAATCGACGATGGATACCCAATAGGAGCAACACCACCC
ACACCAGGGAGAAACACAAGATCACCAGTAACAAGAGATGACGAATCTTC
AAATAACAGTGGTCTCATTATTGGCATCGTATTTGGTATATTTGTTGTCA
TCTTTGCAATGGTTCTGGCATTCTTCTTGTATAGGAGGTAAAAAAATCTT
ACACAATCAAATATAAACACTTACAATGTCACAAAAGTTGCCAAAAGGCG
TACTGATCCCCATTTCTCGAAGCTGAGAATAAACTGGAGCCCAACCCTTA
CAATCCTTACTTTCAGCAAAAAGTTGACACTTAGAGAGACATTCGATTTA
GAAGATGAAAAACCAGACCCTTTAAGCACGCACATAACCAGCACCAATTT
GTGCCTAAGTATCCCCCCCCCCTTCGGGGGTTATTAGCGAGTTTATGTAT
TTGCATTTTTGAGGACGCGGTAAAGTGACTGAAGCGATCTGGAAAAACCC
ACAGTTCTGACCAGCAAAATCGAGGACGGTAAAAGTGCTGATTTACCGTC
GTCCTCACTTAGTCAGGATCTAGTCAAGTTAGAACCTTATCGTCTCCGTC
GCAGAAAAACACACATGCATAAACTCGGTATTGAAAAGGTGCCTTTCATG
CATGAATCACAGTATTATTTTCTTTTTCTTCAAGACGTAAAAGAAGCCGC
CGAGCCAAGAAACAAACGCTCTCACCCGTATACGCNAAAAAAATCTTACA
CAGTCAAATACAAACACTTGCAATGTCACAAAAGTTGCCAAAAGGCGTAC
TGATTCCCCATTTCTCGAAGCTGAGAATAAACTGGAGCCAAACCCTTACA
ATCCTTACTTTCAGCAAAAGGTTGACCCTTAGAGAGACATTCGATTTAGA
AGATGAAAAACCAGACCCTTTAAGCACGCACATGACCAGCACCAATTTGT
GCCTAAGTATCCCCCTTCGGGGGTTATTAGCGAGTTTATGTATTTGCATT
TTTGAGGACGCGGTAAAGTGACTGAAGCGATCTGAAAAAACCCGCAGTTC
TGACCAGCAAAATCGAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCA
CTTAGTCAGGATCTAGTCAAGTTAGAACCTTATCGTCTCCGTCGCAGAAA
AACACACATGCATAAACTCGGTATTGAAAAGGTGCCTTTCATGCATGAAT
CACAGTATTATTTTCTTTTTCTTCAAGACGTAAAAGAAGCCGCCGAGCCA
AGAAACAAACGCTCTCACCCGTATACGCAAAATGTGAAGTCGACATCAAC
TCAACAAATGGAGAAGAAGAAAGCAAACTCATACACCAGTATACCGACTC
CAATGCATACGCTTTACCGTCAAACCCACAACCTGAGTACCGTGAAATCG
AACCTGAAATTCGCTATTCACCTAGAAATAATCATGTTTCCATGGAGACT
CCGAAACAAAACAACAGCCATTATGTGTCAGCGACTTCTACACAAACCAA
TAGCAAGCAAAAGGGACTTGAAGCTGAGTACCAGACCCCTGATATAGTGC
CATCACCACAAAATAGAATCACATCTGAGATAAGCATAACAAAAGACAAT
ATTACCGATGAAGCACTAGATTATAGCGTTCCTGATAAAACTGGAAAGTC
AAAATCTAAAAACAATACTAAAAATGATACGCCTTACAAAGAACATTCTG
TAGGATATAGCGTTCCTGATAAAACTGGAGACTCGGAATGGAAAGACTAT
ACTGAAAACGTGAAAGAATCTTCGCCAGAATATAGTGTTCCAGGATCATC
GGTAGATCATGTAGACAGTGGAGCTGCCGATGACGAAACAACACCTTTAA
AGGGGTATAGTGAGCCGGGACAAATAATAGATAATGGTAAAAGTGATAAT
GATAATGATGATGACGATGACGAAGTTAATTATTACAGTACACCAGTAAC
CAGTGAAACGGATGCATTGGTGAGACCGAATTCAGCATTGTACGCTAAAG
TGAATAAAAATACGAAGAGATAGGGGACTTTGAGAAAGTTAAGCTTGAAT
ATCAAAGTATGTAAATTTTAAAGCTTTGCATTGGCTTCAAAAGGAAATTT
TGAAGAAATTTAAAATACCTTCTTCTCATAGAGCATTTAATGACATTTGT
TAACCGGTTACTTCTTCAAAGCAGGCTACACGGCTATTTGCGCAATGCAA
TTGGTTCTTTTCGCGTGACGACGGGCCTACATTGCCCAGAGTTGCCCGTC
GTTAGGAAAATTCGTTGACATCAATGCGTTGACATCATGTCTCTCAATTT
TTATTTCTGACGTCAGAAATTATAAAAATTTTTGATCTCTTTTCGCTTGT
ATTTTTCACTTTAGTTCGCTATTTTTCCTGAATAAAGCGCTAAAAATCAA
TCGAAGCTGAAGGAAACGGTTAATAAATACAATAATGACCGGTTTTTTCG
GCTGTACTGAAAATATTGCCCTCGGTCGACGCAACAACCTCGCAAGCTCG
GTCATTACTTGACCTCGGGCAATATTTCTCAGTACAGCCCTTACTAACCA
GTCTTTATTGTATTAGTGTAATATATGTATACAAAATGATGTAAGATAAA
AGTTTGCGTTGGCTTCGAAAGGAAAATTTCAAGAAATTTTTATAAAATAC
TTTTCCAAAAAAAATTAACAAAGAAAAGCAAGAAAAACCACATAAGATTT
AATTCAATTTTACTACTACTATATTGAGTTTCAAATTGCACATAACCTCC
TGCTCTCTTAGAATCACTTTTAAGTAATTTACAACAATATCCCGGGGGAG
GGGACGTGTCACTGGTCAGAGTTCCTTTTTTAGGCTCTGAAGATATCTGA
CAGGGTTCCAGATAGATTTCCAAAATATGTATCCGACAGGGGCGACTATT
GGGAATTTTTGAAAATTCATAGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066965-exon-scaffold_462-1575043694:247105..248042 | TCONS_00066965-exon-scaffold_462-1575043694:247105..248042 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1575043694:246463..246650 | TCONS_00066965-exon-scaffold_462-1575043694:246463..246650 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1575043694:245306..246076 | TCONS_00066965-exon-scaffold_462-1575043694:245306..246076 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1575043694:242567..244265 | TCONS_00066965-exon-scaffold_462-1575043694:242567..244265 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1510915933:247105..248042 | TCONS_00066965-exon-scaffold_462-1510915933:247105..248042 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1510915933:246463..246650 | TCONS_00066965-exon-scaffold_462-1510915933:246463..246650 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1510915933:245306..246076 | TCONS_00066965-exon-scaffold_462-1510915933:245306..246076 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1510915933:242567..244265 | TCONS_00066965-exon-scaffold_462-1510915933:242567..244265 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1491911889:247105..248042 | TCONS_00066965-exon-scaffold_462-1491911889:247105..248042 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1491911889:246463..246650 | TCONS_00066965-exon-scaffold_462-1491911889:246463..246650 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1491911889:245306..246076 | TCONS_00066965-exon-scaffold_462-1491911889:245306..246076 | Clytia hemisphaerica | exon |
TCONS_00066965-exon-scaffold_462-1491911889:242567..244265 | TCONS_00066965-exon-scaffold_462-1491911889:242567..244265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_462 | supercontig | scaffold_462:242567..248042 - |
Blast
The following BLAST results are available for this feature:
|