Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066963 ID=TCONS_00066963|Name=TCONS_00066963|organism=Clytia hemisphaerica|type=transcript|length=2794bp
CGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTCTT
GCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAACAA
GGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAAAA
AGATTAGTTGCTATACTGAAGGTGAATTACAATCAGAATGTGGAAGCACT
AATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAATCCCTAC
GAGATGTTCAAGCGCTGGAtgggaaaatataaaaatatgggGTTTCAAAG
AGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAAAGAAAC
ATTAGATTGTCCAGCAGAGCGTTAGTAAGTATCATGAATGAGTTTGATTA
CTTTGATTTTACGCTTAATCTTTCTGAAATTATCACCAGTCTGGAATCAG
TCTATTTGCTTTAGGCAAGCATTCATTTTAGCGAATGTAGTACAAAGGTA
GAGCCTTCTACTATGGTATgcaaggtcgtgggttcaatcccgCCCGAGTC
ATATCAAAAACTTCGTAGTAgtacaaaatggtacttgatgctttGTGTTA
TACAattaaagagaaggatcaagggtgaGTGGAGCATTTCATGGAGAAAG
AGTAGCGCCCTCTCCTACCTTCGGGGAAAATTCGACAATAAAGGTTTATT
ATATAaccattgaaaaaagaaattatttggtAAAACGCCTTATAATACCA
TTCTTTACAGAATTTCGATAATCGAAGAAAATTGGATGGACTTTTAGGAG
TTATCACGTACACATGTCCAAATGGAAATGTTTACTGTGATGTTCTTAAG
TTTGCTGGAGCGGCTAAATATCCTCTACCATACGCCAGTTCAATAGACGA
CCTGGTGAAAAATCTTAAGCAAATCGACGATGGATACCCAATAGGAGCAA
CACCACCCACACCAGGGAGAAACACAAGATCACCAGTAACAAGAGATGAC
GAATCTTCAAATAACAGTGGTCTCATTATTGGCATCGTATTTGGTATATT
TGTTGTCATCTTTGCAATGGTTCTGGCATTCTTCTTGTATAGGAGacGTA
AAAGAAGCCGCCGAGCCAAGAAACAAACGCTCTCACCCGTATACGCAAAA
TGTGAAGTCGACATCAACTCAACAAATGGAGAAGAAGAAAGCAAACTCAT
ACACCAGTATACCGACTCCAATGCATACGCTTTACCGTCAAACCCACAAC
CTGAGTACCGTGAAATCGAACCTGAAATTCGCTATTCACCTAGAAATAAT
CATGTTTCCATGGAGACTCCGAAACAAAACAACAGCCATTATGTGTCAGC
GACTTCTACACAAACCAATAGCAAGCAAAAGGGACTTGAAGCTGAGTACC
AGACCCCTGATATAGTGCCATCACCACAAAATAGAATCACATCTGAGATA
AGCATAACAAAAGACAATATTACCGATGAAGCACTAGATTATAGCGTTCC
TGATAAAACTGGaaagtcaaaatctaaaaacaatACTAAAAATGATACGC
CTTACAAAGAACATTCTGTAGGATATAGCGTTCCTGATAAAACTGGAGAC
TCGGAATGGAAAGACTATACTGAAAACGTGAAAGAATCTTCGCCAGAATA
TAGTGTTCCAGGATCATCGGTAGATCATGTAGACAGTGGAGCTGCCGATG
ACGAAACAACACCTTTAAAGGGGTATAGTGAGCCGGGACAAATAATAGAT
AATGGTAAAAGTGATAATGATAATGATGATGACGATGACGAAGTTAATTA
TTACAGTACACCAGTAACCAGTGAAACGGATGCATTGGTGAGACCGAATT
CAGCATTGTACGCTAAAGTGAATAAAAATACGAAGAGATAGGGGACTTTG
AGAAAGTTAAGCTTGAATATCAAAGTATgtaaattttaaagctttgcatt
ggcttcaaaaggaaattttgaagaaatttaaaATACCTTCTTCTCATAGA
GCATTTAATGACatttgttaaccggttacttctTCAAAGCAGGCTACACG
GCtatttgcgcaatgcaattggttcttttcgcgtgacgacgggcctacat
tgcccagagttgcccgtcgttaggaaaattcgtTGACatcaatgcgttga
catcatgtctctcaatttttatttctgacgtcagaaattataaaaatttt
tgatctcttttcgcttgtatttttcactttagttcgctatttttcctgaa
taaagcgctaaaaatcaatcgaagctgaaggaaacggttaataaatacaa
taatgaccggttttttcggctgtactgaaaatattgccctcggtcgacgc
aacaacctcgcaagctcggtcattacttgacctcgggcaatatttctcag
tacagcccttaCTAACCAGTCTTTATTGTATTAGTGTAATATATGTATAC
AAAATGATGTAAGATAAAAGTTTGCGTTGGCTTCGAAaggaaaatttcaa
gaaatttttataaaatacttttccaaaaaaaattaacaaagaaaagcaag
aaaaacCACATAAGatttaattcaattttactACTACTATATTGAGTTTC
AAATTGCACATAACCTCCTGCTCTCTTAGAATCACTTTTAAGTAATTTAC
AACAATATCCCGGGGGAGGGGACGTGTCACTGGTCAGAgttcctttttta
ggctctgaagatatctgacagggttccAGATAGATTTCCAAAATATGTAT
CCGACAGGGGCGACTattgggaatttttgaaaattcatagggtg Run BLAST on NCBI transcript from alignment at scaffold_462:242567..247290- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066963 ID=TCONS_00066963|Name=TCONS_00066963|organism=Clytia hemisphaerica|type=transcript|length=4724bp|location=Sequence derived from alignment at scaffold_462:242567..247290- (Clytia hemisphaerica)
CGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTCTT
GCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAACAA
GGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAAAA
AGATTAGTTGCTATACTGAAGGTGAATTACAATCAGGTAAGACTTAAAAA
TATGGTTTGAGAAAATGAAATGAAAGTAGTGGTTAGTAGAACTCCTTTAA
TGTATCAAATTAGTTATTAAAGGTCACGGAAAAAACTCTAGCCTGAGTAA
AGTGTATTCTAGCGGTAAGGACTGTTGTAGCCTGGTCACTATGAGGTAAA
CAATGTAAGTGATGCATTTTCTAGAATTGTGTAAACTATCATTTTGCAAG
TGACCCCTTTTAAAATCCATCAAGTGACTTAATGATTACGATGGGAGTGA
CTTTATTTCTTAATAAGAATCCCATGATATAGTTGTGGTATACCGAGAAT
CCTTAGCTTTTAAGTCAACTGAAGCATACAGTATATGCCATAGGCTTCTG
CTCATACTCCGATGAAAGTTCCTTATAGGAAGTACATCAATAGAGGTCTG
CGAATCAAACTAATTAAAACCATATTCAATAAATCTTCAGAATGTGGAAG
CACTAATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAATCC
CTACGAGATGTTCAAGCGCTGGATGGGAAAATATAAAAATATGGGGTTTC
AAAGAGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAAAG
AAACATTAGATTGTCCAGCAGAGCGTTAGTAAGTATCATGAATGAGTTTG
ATTACTTTGATTTTACGCTTAATCTTTCTGAAATTATCACCAGTCTGGAA
TCAGTCTATTTGCTTTAGGCAAGCATTCATTTTAGCGAATGTAGTACAAA
GGTAGAGCCTTCTACTATGGTATGCAAGGTCGTGGGTTCAATCCCGCCCG
AGTCATATCAAAAACTTCGTAGTAGTACAAAATGGTACTTGATGCTTTGT
GTTATACAATTAAAGAGAAGGATCAAGGGTGAGTGGAGCATTTCATGGAG
AAAGAGTAGCGCCCTCTCCTACCTTCGGGGAAAATTCGACAATAAAGGTT
TATTATATAACCATTGAAAAAAGAAATTATTTGGTAAAACGCCTTATAAT
ACCATTCTTTACAGAATTTCGATAATCGAAGAAAATTGGATGGACTTTTA
GGAGTTATCACGTACACATGTCCAAATGGAAATGTTTACTGTGATGTTCT
TAAGTTTGCTGGAGCGGCTAAATGTAAGTGGGAAAACTTTTCTTTAACGT
CATCAATTGGAAGAGTGCTTTTTAAAGCTCAGGTTTAATCAAAATTTATT
TTGAAATACAACTTTATTGAATTCGCTCTACGAAGAGTATTGAGCACTCT
TTTAATAGTTGTTCAACAAAAACATTATTGTTTTCGCCTCAAAAATGGCG
TGATATGTTGGGAATTAACACCACGGTTATTACAAGTCGCCTCCATTCTA
GATAGGTAAAAGTCTACTAATTCTCTTAGCAAAGCGTCTACCACAAGCAA
AGTGTTGAGTCTCTCTATACCTCGAACCCGCACGGAAAACACAAAATTGT
TTGAATTAAGGTTCAAAAGGTGTTGTTAATTGGAGGGACAAGAAAACTTG
TCCGAGTTAAGGAAACATTCGATTTATAGAGGTTCAATTTCTTTTAAAAT
GTTCTATAGATCCTCTACCATACGCCAGTTCAATAGACGACCTGGTGAAA
AATCTTAAGCAAATCGACGATGGATACCCAATAGGAGCAACACCACCCAC
ACCAGGGAGAAACACAAGATCACCAGTAACAAGAGATGACGAATCTTCAA
ATAACAGTGGTCTCATTATTGGCATCGTATTTGGTATATTTGTTGTCATC
TTTGCAATGGTTCTGGCATTCTTCTTGTATAGGAGGTAAAAAAATCTTAC
ACAATCAAATATAAACACTTACAATGTCACAAAAGTTGCCAAAAGGCGTA
CTGATCCCCATTTCTCGAAGCTGAGAATAAACTGGAGCCCAACCCTTACA
ATCCTTACTTTCAGCAAAAAGTTGACACTTAGAGAGACATTCGATTTAGA
AGATGAAAAACCAGACCCTTTAAGCACGCACATAACCAGCACCAATTTGT
GCCTAAGTATCCCCCCCCCCTTCGGGGGTTATTAGCGAGTTTATGTATTT
GCATTTTTGAGGACGCGGTAAAGTGACTGAAGCGATCTGGAAAAACCCAC
AGTTCTGACCAGCAAAATCGAGGACGGTAAAAGTGCTGATTTACCGTCGT
CCTCACTTAGTCAGGATCTAGTCAAGTTAGAACCTTATCGTCTCCGTCGC
AGAAAAACACACATGCATAAACTCGGTATTGAAAAGGTGCCTTTCATGCA
TGAATCACAGTATTATTTTCTTTTTCTTCAAGACGTAAAAGAAGCCGCCG
AGCCAAGAAACAAACGCTCTCACCCGTATACGCNAAAAAAATCTTACACA
GTCAAATACAAACACTTGCAATGTCACAAAAGTTGCCAAAAGGCGTACTG
ATTCCCCATTTCTCGAAGCTGAGAATAAACTGGAGCCAAACCCTTACAAT
CCTTACTTTCAGCAAAAGGTTGACCCTTAGAGAGACATTCGATTTAGAAG
ATGAAAAACCAGACCCTTTAAGCACGCACATGACCAGCACCAATTTGTGC
CTAAGTATCCCCCTTCGGGGGTTATTAGCGAGTTTATGTATTTGCATTTT
TGAGGACGCGGTAAAGTGACTGAAGCGATCTGAAAAAACCCGCAGTTCTG
ACCAGCAAAATCGAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCACT
TAGTCAGGATCTAGTCAAGTTAGAACCTTATCGTCTCCGTCGCAGAAAAA
CACACATGCATAAACTCGGTATTGAAAAGGTGCCTTTCATGCATGAATCA
CAGTATTATTTTCTTTTTCTTCAAGACGTAAAAGAAGCCGCCGAGCCAAG
AAACAAACGCTCTCACCCGTATACGCAAAATGTGAAGTCGACATCAACTC
AACAAATGGAGAAGAAGAAAGCAAACTCATACACCAGTATACCGACTCCA
ATGCATACGCTTTACCGTCAAACCCACAACCTGAGTACCGTGAAATCGAA
CCTGAAATTCGCTATTCACCTAGAAATAATCATGTTTCCATGGAGACTCC
GAAACAAAACAACAGCCATTATGTGTCAGCGACTTCTACACAAACCAATA
GCAAGCAAAAGGGACTTGAAGCTGAGTACCAGACCCCTGATATAGTGCCA
TCACCACAAAATAGAATCACATCTGAGATAAGCATAACAAAAGACAATAT
TACCGATGAAGCACTAGATTATAGCGTTCCTGATAAAACTGGAAAGTCAA
AATCTAAAAACAATACTAAAAATGATACGCCTTACAAAGAACATTCTGTA
GGATATAGCGTTCCTGATAAAACTGGAGACTCGGAATGGAAAGACTATAC
TGAAAACGTGAAAGAATCTTCGCCAGAATATAGTGTTCCAGGATCATCGG
TAGATCATGTAGACAGTGGAGCTGCCGATGACGAAACAACACCTTTAAAG
GGGTATAGTGAGCCGGGACAAATAATAGATAATGGTAAAAGTGATAATGA
TAATGATGATGACGATGACGAAGTTAATTATTACAGTACACCAGTAACCA
GTGAAACGGATGCATTGGTGAGACCGAATTCAGCATTGTACGCTAAAGTG
AATAAAAATACGAAGAGATAGGGGACTTTGAGAAAGTTAAGCTTGAATAT
CAAAGTATGTAAATTTTAAAGCTTTGCATTGGCTTCAAAAGGAAATTTTG
AAGAAATTTAAAATACCTTCTTCTCATAGAGCATTTAATGACATTTGTTA
ACCGGTTACTTCTTCAAAGCAGGCTACACGGCTATTTGCGCAATGCAATT
GGTTCTTTTCGCGTGACGACGGGCCTACATTGCCCAGAGTTGCCCGTCGT
TAGGAAAATTCGTTGACATCAATGCGTTGACATCATGTCTCTCAATTTTT
ATTTCTGACGTCAGAAATTATAAAAATTTTTGATCTCTTTTCGCTTGTAT
TTTTCACTTTAGTTCGCTATTTTTCCTGAATAAAGCGCTAAAAATCAATC
GAAGCTGAAGGAAACGGTTAATAAATACAATAATGACCGGTTTTTTCGGC
TGTACTGAAAATATTGCCCTCGGTCGACGCAACAACCTCGCAAGCTCGGT
CATTACTTGACCTCGGGCAATATTTCTCAGTACAGCCCTTACTAACCAGT
CTTTATTGTATTAGTGTAATATATGTATACAAAATGATGTAAGATAAAAG
TTTGCGTTGGCTTCGAAAGGAAAATTTCAAGAAATTTTTATAAAATACTT
TTCCAAAAAAAATTAACAAAGAAAAGCAAGAAAAACCACATAAGATTTAA
TTCAATTTTACTACTACTATATTGAGTTTCAAATTGCACATAACCTCCTG
CTCTCTTAGAATCACTTTTAAGTAATTTACAACAATATCCCGGGGGAGGG
GACGTGTCACTGGTCAGAGTTCCTTTTTTAGGCTCTGAAGATATCTGACA
GGGTTCCAGATAGATTTCCAAAATATGTATCCGACAGGGGCGACTATTGG
GAATTTTTGAAAATTCATAGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066963-exon-scaffold_462-1575043694:247105..247290 | TCONS_00066963-exon-scaffold_462-1575043694:247105..247290 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1575043694:245968..246650 | TCONS_00066963-exon-scaffold_462-1575043694:245968..246650 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1575043694:245306..245531 | TCONS_00066963-exon-scaffold_462-1575043694:245306..245531 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1575043694:242567..244265 | TCONS_00066963-exon-scaffold_462-1575043694:242567..244265 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1510915933:247105..247290 | TCONS_00066963-exon-scaffold_462-1510915933:247105..247290 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1510915933:245968..246650 | TCONS_00066963-exon-scaffold_462-1510915933:245968..246650 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1510915933:245306..245531 | TCONS_00066963-exon-scaffold_462-1510915933:245306..245531 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1510915933:242567..244265 | TCONS_00066963-exon-scaffold_462-1510915933:242567..244265 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1491911889:247105..247290 | TCONS_00066963-exon-scaffold_462-1491911889:247105..247290 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1491911889:245968..246650 | TCONS_00066963-exon-scaffold_462-1491911889:245968..246650 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1491911889:245306..245531 | TCONS_00066963-exon-scaffold_462-1491911889:245306..245531 | Clytia hemisphaerica | exon |
| TCONS_00066963-exon-scaffold_462-1491911889:242567..244265 | TCONS_00066963-exon-scaffold_462-1491911889:242567..244265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:242567..247290 - |
Blast
The following BLAST results are available for this feature:
|
