TCONS_00066962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066962
Unique NameTCONS_00066962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066962 ID=TCONS_00066962|Name=TCONS_00066962|organism=Clytia hemisphaerica|type=transcript|length=2428bp
ATTACGATGGGAGTGACTTTATTTCTTAATAAGAATCCCATGATATAGTT
GTGGTATACCGAGAATCCTTAGCTTTTAAGTCAACTGAAGCATACAGTAT
ATGccataggcttctgctcataCTCCGATGAAAGTTCCTTATAGGAAGTA
CATCAATAGAGGTCTGCGAATCAAACTAATTAAAACCATATTCAATAAAT
CTTCAGAATGTGGAAGCACTAATGGGAACGAATTCAGAACCATTCCCAAA
CACATTACTCAAATCCCTACGAGATGTTCAAGCGCTGGAtgggaaaatat
aaaaatatgggGTTTCAAAGAGCGTGATAGACTCGGTTGGCAGGAATTAA
GTAATGGAGAGAAAAGAAACATTAGATTGTCCAGCAGAGCGTTAAATTTC
GATAATCGAAGAAAATTGGATGGACTTTTAGGAGTTATCACGTACACATG
TCCAAATGGAAATGTTTACTGTGATGTTCTTAAGTTTGCTGGAGCGGCTA
AATATCCTCTACCATACGCCAGTTCAATAGACGACCTGGTGAAAAATCTT
AAGCAAATCGACGATGGATACCCAATAGGAGCAACACCACCCACACCAGG
GAGAAACACAAGATCACCAGTAACAAGAGATGACGAATCTTCAAATAACA
GTGGTCTCATTATTGGCATCGTATTTGGTATATTTGTTGTCATCTTTGCA
ATGGTTCTGGCATTCTTCTTGTATAGGAGacGTAAAAGAAGCCGCCGAGC
CAAGAAACAAACGCTCTCACCCGTATACGCAAAATGTGAAGTCGACATCA
ACTCAACAAATGGAGAAGAAGAAAGCAAACTCATACACCAGTATACCGAC
TCCAATGCATACGCTTTACCGTCAAACCCACAACCTGAGTACCGTGAAAT
CGAACCTGAAATTCGCTATTCACCTAGAAATAATCATGTTTCCATGGAGA
CTCCGAAACAAAACAACAGCCATTATGTGTCAGCGACTTCTACACAAACC
AATAGCAAGCAAAAGGGACTTGAAGCTGAGTACCAGACCCCTGATATAGT
GCCATCACCACAAAATAGAATCACATCTGAGATAAGCATAACAAAAGACA
ATATTACCGATGAAGCACTAGATTATAGCGTTCCTGATAAAACTGGaaag
tcaaaatctaaaaacaatACTAAAAATGATACGCCTTACAAAGAACATTC
TGTAGGATATAGCGTTCCTGATAAAACTGGAGACTCGGAATGGAAAGACT
ATACTGAAAACGTGAAAGAATCTTCGCCAGAATATAGTGTTCCAGGATCA
TCGGTAGATCATGTAGACAGTGGAGCTGCCGATGACGAAACAACACCTTT
AAAGGGGTATAGTGAGCCGGGACAAATAATAGATAATGGTAAAAGTGATA
ATGATAATGATGATGACGATGACGAAGTTAATTATTACAGTACACCAGTA
ACCAGTGAAACGGATGCATTGGTGAGACCGAATTCAGCATTGTACGCTAA
AGTGAATAAAAATACGAAGAGATAGGGGACTTTGAGAAAGTTAAGCTTGA
ATATCAAAGTATgtaaattttaaagctttgcattggcttcaaaaggaaat
tttgaagaaatttaaaATACCTTCTTCTCATAGAGCATTTAATGACattt
gttaaccggttacttctTCAAAGCAGGCTACACGGCtatttgcgcaatgc
aattggttcttttcgcgtgacgacgggcctacattgcccagagttgcccg
tcgttaggaaaattcgtTGACatcaatgcgttgacatcatgtctctcaat
ttttatttctgacgtcagaaattataaaaatttttgatctcttttcgctt
gtatttttcactttagttcgctatttttcctgaataaagcgctaaaaatc
aatcgaagctgaaggaaacggttaataaatacaataatgaccggtttttt
cggctgtactgaaaatattgccctcggtcgacgcaacaacctcgcaagct
cggtcattacttgacctcgggcaatatttctcagtacagcccttaCTAAC
CAGTCTTTATTGTATTAGTGTAATATATGTATACAAAATGATGTAAGATA
AAAGTTTGCGTTGGCTTCGAAaggaaaatttcaagaaatttttataaaat
acttttccaaaaaaaattaacaaagaaaagcaagaaaaacCACATAAGat
ttaattcaattttactACTACTATATTGAGTTTCAAATTGCACATAACCT
CCTGCTCTCTTAGAATCACTTTTAAGTAATTTACAACAATATCCCGGGGG
AGGGGACGTGTCACTGGTCAGAgttccttttttaggctctgaagatatct
gacagggttccAGATAGATTTCCAAAATATGTATCCGACAGGGGCGACTa
ttgggaatttttgaaaattcatagggtg
Run BLAST on NCBI

transcript from alignment at scaffold_462:242567..246856-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066962 ID=TCONS_00066962|Name=TCONS_00066962|organism=Clytia hemisphaerica|type=transcript|length=4290bp|location=Sequence derived from alignment at scaffold_462:242567..246856- (Clytia hemisphaerica)
ATTACGATGGGAGTGACTTTATTTCTTAATAAGAATCCCATGATATAGTT
GTGGTATACCGAGAATCCTTAGCTTTTAAGTCAACTGAAGCATACAGTAT
ATGCCATAGGCTTCTGCTCATACTCCGATGAAAGTTCCTTATAGGAAGTA
CATCAATAGAGGTCTGCGAATCAAACTAATTAAAACCATATTCAATAAAT
CTTCAGAATGTGGAAGCACTAATGGGAACGAATTCAGAACCATTCCCAAA
CACATTACTCAAATCCCTACGAGATGTTCAAGCGCTGGATGGGAAAATAT
AAAAATATGGGGTTTCAAAGAGCGTGATAGACTCGGTTGGCAGGAATTAA
GTAATGGAGAGAAAAGAAACATTAGATTGTCCAGCAGAGCGTTAGTAAGT
ATCATGAATGAGTTTGATTACTTTGATTTTACGCTTAATCTTTCTGAAAT
TATCACCAGTCTGGAATCAGTCTATTTGCTTTAGGCAAGCATTCATTTTA
GCGAATGTAGTACAAAGGTAGAGCCTTCTACTATGGTATGCAAGGTCGTG
GGTTCAATCCCGCCCGAGTCATATCAAAAACTTCGTAGTAGTACAAAATG
GTACTTGATGCTTTGTGTTATACAATTAAAGAGAAGGATCAAGGGTGAGT
GGAGCATTTCATGGAGAAAGAGTAGCGCCCTCTCCTACCTTCGGGGAAAA
TTCGACAATAAAGGTTTATTATATAACCATTGAAAAAAGAAATTATTTGG
TAAAACGCCTTATAATACCATTCTTTACAGAATTTCGATAATCGAAGAAA
ATTGGATGGACTTTTAGGAGTTATCACGTACACATGTCCAAATGGAAATG
TTTACTGTGATGTTCTTAAGTTTGCTGGAGCGGCTAAATGTAAGTGGGAA
AACTTTTCTTTAACGTCATCAATTGGAAGAGTGCTTTTTAAAGCTCAGGT
TTAATCAAAATTTATTTTGAAATACAACTTTATTGAATTCGCTCTACGAA
GAGTATTGAGCACTCTTTTAATAGTTGTTCAACAAAAACATTATTGTTTT
CGCCTCAAAAATGGCGTGATATGTTGGGAATTAACACCACGGTTATTACA
AGTCGCCTCCATTCTAGATAGGTAAAAGTCTACTAATTCTCTTAGCAAAG
CGTCTACCACAAGCAAAGTGTTGAGTCTCTCTATACCTCGAACCCGCACG
GAAAACACAAAATTGTTTGAATTAAGGTTCAAAAGGTGTTGTTAATTGGA
GGGACAAGAAAACTTGTCCGAGTTAAGGAAACATTCGATTTATAGAGGTT
CAATTTCTTTTAAAATGTTCTATAGATCCTCTACCATACGCCAGTTCAAT
AGACGACCTGGTGAAAAATCTTAAGCAAATCGACGATGGATACCCAATAG
GAGCAACACCACCCACACCAGGGAGAAACACAAGATCACCAGTAACAAGA
GATGACGAATCTTCAAATAACAGTGGTCTCATTATTGGCATCGTATTTGG
TATATTTGTTGTCATCTTTGCAATGGTTCTGGCATTCTTCTTGTATAGGA
GGTAAAAAAATCTTACACAATCAAATATAAACACTTACAATGTCACAAAA
GTTGCCAAAAGGCGTACTGATCCCCATTTCTCGAAGCTGAGAATAAACTG
GAGCCCAACCCTTACAATCCTTACTTTCAGCAAAAAGTTGACACTTAGAG
AGACATTCGATTTAGAAGATGAAAAACCAGACCCTTTAAGCACGCACATA
ACCAGCACCAATTTGTGCCTAAGTATCCCCCCCCCCTTCGGGGGTTATTA
GCGAGTTTATGTATTTGCATTTTTGAGGACGCGGTAAAGTGACTGAAGCG
ATCTGGAAAAACCCACAGTTCTGACCAGCAAAATCGAGGACGGTAAAAGT
GCTGATTTACCGTCGTCCTCACTTAGTCAGGATCTAGTCAAGTTAGAACC
TTATCGTCTCCGTCGCAGAAAAACACACATGCATAAACTCGGTATTGAAA
AGGTGCCTTTCATGCATGAATCACAGTATTATTTTCTTTTTCTTCAAGAC
GTAAAAGAAGCCGCCGAGCCAAGAAACAAACGCTCTCACCCGTATACGCN
AAAAAAATCTTACACAGTCAAATACAAACACTTGCAATGTCACAAAAGTT
GCCAAAAGGCGTACTGATTCCCCATTTCTCGAAGCTGAGAATAAACTGGA
GCCAAACCCTTACAATCCTTACTTTCAGCAAAAGGTTGACCCTTAGAGAG
ACATTCGATTTAGAAGATGAAAAACCAGACCCTTTAAGCACGCACATGAC
CAGCACCAATTTGTGCCTAAGTATCCCCCTTCGGGGGTTATTAGCGAGTT
TATGTATTTGCATTTTTGAGGACGCGGTAAAGTGACTGAAGCGATCTGAA
AAAACCCGCAGTTCTGACCAGCAAAATCGAGGACGGTAAAAGTGCTGATT
TACCGTCGTCCTCACTTAGTCAGGATCTAGTCAAGTTAGAACCTTATCGT
CTCCGTCGCAGAAAAACACACATGCATAAACTCGGTATTGAAAAGGTGCC
TTTCATGCATGAATCACAGTATTATTTTCTTTTTCTTCAAGACGTAAAAG
AAGCCGCCGAGCCAAGAAACAAACGCTCTCACCCGTATACGCAAAATGTG
AAGTCGACATCAACTCAACAAATGGAGAAGAAGAAAGCAAACTCATACAC
CAGTATACCGACTCCAATGCATACGCTTTACCGTCAAACCCACAACCTGA
GTACCGTGAAATCGAACCTGAAATTCGCTATTCACCTAGAAATAATCATG
TTTCCATGGAGACTCCGAAACAAAACAACAGCCATTATGTGTCAGCGACT
TCTACACAAACCAATAGCAAGCAAAAGGGACTTGAAGCTGAGTACCAGAC
CCCTGATATAGTGCCATCACCACAAAATAGAATCACATCTGAGATAAGCA
TAACAAAAGACAATATTACCGATGAAGCACTAGATTATAGCGTTCCTGAT
AAAACTGGAAAGTCAAAATCTAAAAACAATACTAAAAATGATACGCCTTA
CAAAGAACATTCTGTAGGATATAGCGTTCCTGATAAAACTGGAGACTCGG
AATGGAAAGACTATACTGAAAACGTGAAAGAATCTTCGCCAGAATATAGT
GTTCCAGGATCATCGGTAGATCATGTAGACAGTGGAGCTGCCGATGACGA
AACAACACCTTTAAAGGGGTATAGTGAGCCGGGACAAATAATAGATAATG
GTAAAAGTGATAATGATAATGATGATGACGATGACGAAGTTAATTATTAC
AGTACACCAGTAACCAGTGAAACGGATGCATTGGTGAGACCGAATTCAGC
ATTGTACGCTAAAGTGAATAAAAATACGAAGAGATAGGGGACTTTGAGAA
AGTTAAGCTTGAATATCAAAGTATGTAAATTTTAAAGCTTTGCATTGGCT
TCAAAAGGAAATTTTGAAGAAATTTAAAATACCTTCTTCTCATAGAGCAT
TTAATGACATTTGTTAACCGGTTACTTCTTCAAAGCAGGCTACACGGCTA
TTTGCGCAATGCAATTGGTTCTTTTCGCGTGACGACGGGCCTACATTGCC
CAGAGTTGCCCGTCGTTAGGAAAATTCGTTGACATCAATGCGTTGACATC
ATGTCTCTCAATTTTTATTTCTGACGTCAGAAATTATAAAAATTTTTGAT
CTCTTTTCGCTTGTATTTTTCACTTTAGTTCGCTATTTTTCCTGAATAAA
GCGCTAAAAATCAATCGAAGCTGAAGGAAACGGTTAATAAATACAATAAT
GACCGGTTTTTTCGGCTGTACTGAAAATATTGCCCTCGGTCGACGCAACA
ACCTCGCAAGCTCGGTCATTACTTGACCTCGGGCAATATTTCTCAGTACA
GCCCTTACTAACCAGTCTTTATTGTATTAGTGTAATATATGTATACAAAA
TGATGTAAGATAAAAGTTTGCGTTGGCTTCGAAAGGAAAATTTCAAGAAA
TTTTTATAAAATACTTTTCCAAAAAAAATTAACAAAGAAAAGCAAGAAAA
ACCACATAAGATTTAATTCAATTTTACTACTACTATATTGAGTTTCAAAT
TGCACATAACCTCCTGCTCTCTTAGAATCACTTTTAAGTAATTTACAACA
ATATCCCGGGGGAGGGGACGTGTCACTGGTCAGAGTTCCTTTTTTAGGCT
CTGAAGATATCTGACAGGGTTCCAGATAGATTTCCAAAATATGTATCCGA
CAGGGGCGACTATTGGGAATTTTTGAAAATTCATAGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041845XLOC_041845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066962-exon-scaffold_462-1575043694:246463..246856TCONS_00066962-exon-scaffold_462-1575043694:246463..246856Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1575043694:245968..246076TCONS_00066962-exon-scaffold_462-1575043694:245968..246076Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1575043694:245306..245531TCONS_00066962-exon-scaffold_462-1575043694:245306..245531Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1575043694:242567..244265TCONS_00066962-exon-scaffold_462-1575043694:242567..244265Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1510915933:246463..246856TCONS_00066962-exon-scaffold_462-1510915933:246463..246856Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1510915933:245968..246076TCONS_00066962-exon-scaffold_462-1510915933:245968..246076Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1510915933:245306..245531TCONS_00066962-exon-scaffold_462-1510915933:245306..245531Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1510915933:242567..244265TCONS_00066962-exon-scaffold_462-1510915933:242567..244265Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1491911889:246463..246856TCONS_00066962-exon-scaffold_462-1491911889:246463..246856Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1491911889:245968..246076TCONS_00066962-exon-scaffold_462-1491911889:245968..246076Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1491911889:245306..245531TCONS_00066962-exon-scaffold_462-1491911889:245306..245531Clytia hemisphaericaexon
TCONS_00066962-exon-scaffold_462-1491911889:242567..244265TCONS_00066962-exon-scaffold_462-1491911889:242567..244265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:242567..246856 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (11.4188 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.77293	1.32892	1.90778	1.2998	6.15585e-05	0.377383	0	0.427085	2.29743	1.23959	1.04845	1.26185	0.528804	2.98818	5.46238	5.32432	1.45739	1.23983	0.731689	1.13528	5.08348	0.457185	11.4188	9.99536	9.40064	9.08677
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20040060080010001200140016001800200022002400Sequence
Match NameE-valueIdentityDescription
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