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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066946 ID=TCONS_00066946|Name=TCONS_00066946|organism=Clytia hemisphaerica|type=transcript|length=2187bpRun BLAST on NCBI protein sequence of TCONS_00066946-protein >TCONS_00066946-protein ID=TCONS_00066946-protein|Name=TCONS_00066946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=728bp QTTRKKIKLKVNMKLFAALVVLCLAGDVYSKINLKSIISVNNIKEYKKILRun BLAST on NCBI transcript from alignment at scaffold_462:77826..105028- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066946 ID=TCONS_00066946|Name=TCONS_00066946|organism=Clytia hemisphaerica|type=transcript|length=27203bp|location=Sequence derived from alignment at scaffold_462:77826..105028- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_462:77826..105028- >TCONS_00066946 ID=TCONS_00066946|Name=TCONS_00066946|organism=Clytia hemisphaerica|type=CDS|length=41496bp|location=Sequence derived from alignment at scaffold_462:77826..105028- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066946 vs. Swiss-Prot (Human)
Match: PDIA5 (Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 2.209e-115 Identity = 218/503 (43.34%), Postives = 313/503 (62.23%), Query Frame = 2
Query: 44 LFAALVVLCLAGDVYSKINLKSIIS-VNNIKEYKKILKRNKNVLTLYAKEDKSALNYLRWMEDVAKDIKGKGTIVYINCGESKDAKKLCKKYSVTPKPK----LLKHYKDGEFNKDYDRKDTAKSLLNFMLDPTGDAPWEEDPAAKNVVQVSSXXXXXXXXXXXXGPMLIMFYAPWCGYCKRLKPDYAAAATELKGKAVLVGMDVDKPDAFNVRYQFNITGFPTLIYFENGEQKYNYAG-KMDKEGLISWMXXXXXXXXXXXXXXXXXXXXXXXILHLTDSTFDEGLKEHASIVVMFYAPWCGHCKSMKPEFVDAAKQM-TEEETAGKLAAVDCTKETKVCKKFDISGYPTVKYFENAEYKFKLNIRKKDEIVKFMKNXXXXXXXXXXDLPWSEVSGPEILHLTDANFKDELKKKKHVLVMFYAPWCGHCXXXXXXXXXXXXTFTEDRKVWFAGVDCTVDKKS--CEQFGVSGYPTFRYFLYGKKDFKYEGGRNTDAFIEFMK 1525
L A VVL S + S+I +++ K+ KK+L+ NVL LY+K + +A N+LR + VA+ +KG+GTI +++CG++ +++KLCKK V PK L HY+DG F+ +Y+R T KS++ F+ DP G WEEDP AK+VV + SEK+ +L +KE+ P+LIMFYAPWC CKR+ P + AAT+L+G AVL GM+V + N++ ++++ GFPT+ YFE G + Y E ++ W+ P + + E W+++ + HLTD FD+ +KEH+S++VMF+APWCGHCK MKPEF AA+ + E +++G LAAVD T + ++F IS +PT+KYF+N E +R K + +++M+NPE PP P P E +LHL NF++ LKKKKH LVMFYAPWC HCKK P A F +DRK+ A VDC DK C+Q V GYPTF Y+ YGK KY+ R F +++
Sbjct: 10 LLAIWVVL---PSWLSSAKVSSLIERISDPKDLKKLLRTRNNVLVLYSKSEVAAENHLRLLSTVAQAVKGQGTICWVDCGDA-ESRKLCKKMKVDLSPKDKKVELFHYQDGAFHTEYNRAVTFKSIVAFLKDPKGPPLWEEDPGAKDVVHLDSEKDFRRLLKKEEKPLLIMFYAPWCSMCKRMMPHFQKAATQLRGHAVLAGMNVYSSEFENIKEEYSVRGFPTICYFEKGRFLFQYDNYGSTAEDIVEWL--KNPQPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNGEKYAVPVLRTKKKFLEWMQNPEAPPPPEPT----WEEQQTSVLHLVGDNFRETLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQEAVKGYPTFHYYHYGKFAEKYDSDRTELGFTNYIR 502 HSP 2 Score: 204.142 bits (518), Expect = 6.485e-57 Identity = 146/415 (35.18%), Postives = 217/415 (52.29%), Query Frame = 2
Query: 1001 GKLAAVDC--TKETKVCKKFDISGYPTVKYFE---------NAEYKFKLNIRKKDEIVKFMKNXXXXXXXXXXDLPWSEVSGP-EILHL-TDANFKDELKKK-KHVLVMFYAPWCGHCXXXXXXXXXXXXTFTEDRKVWFAGVDCTVDKKSCEQFGVSGYPTFRYFLYGKKDFKYEG-GRNTDAFIEFMKNXXXXXXXXXXXXXXWKDTPSGVVHLGENDFDDFIKSHPSMLVMFYAPWCGHCKQMKPAYTEAANELLG---TDHAIAAVDCTKNRKLASKYSISGYPTLKYFKDGQPSDYDAGRDKDSIVSYLIQKTSGEPPKKKLTGWAAENNFVNHLDSDNFDSHMQDNPSVLVMFYAPWCGHCKKMKPDYADASHVINHEKRIPGSMAAVDCT--ANADICNRFEIRGYPT 2185
G + VDC + K+CKK + P K E + EY + + IV F+K+P+ PP W E G +++HL ++ +F+ LKK+ K +L+MFYAPWC CK+ P +KAA + V + + E++ V G+PT YF G+ F+Y+ G + +E++KNP+ + W D V HL + DFD F+K H S+LVMF+APWCGHCK+MKP + +AA L G + +AAVD T N+ LA ++ IS +PTLKYFK+G+ R K + ++ + PP+ + V HL DNF ++ LVMFYAPWC HCKK+ P + + +++I + AAVDC N D+C + ++GYPT
Sbjct: 78 GTICWVDCGDAESRKLCKKMKVDLSPKDKKVELFHYQDGAFHTEYNRAVTFK---SIVAFLKDPKGPPL-------WEEDPGAKDVVHLDSEKDFRRLLKKEEKPLLIMFYAPWCSMCKRMMPHFQKAATQLRGHAVLAGMNVYSSEFENIKEEYSVRGFPTICYFEKGRFLFQYDNYGSTAEDIVEWLKNPQPPQPQVPETP--WADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNGEKYAVPVLRTKKKFLEWMQNPEAPPPPEPTWE---EQQTSVLHLVGDNFRETLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKDDRKI--ACAAVDCVKDKNQDLCQQEAVKGYPT 475 HSP 3 Score: 180.259 bits (456), Expect = 1.226e-48 Identity = 129/364 (35.44%), Postives = 196/364 (53.85%), Query Frame = 2
Query: 848 ILHL-TDSTFDEGLK-EHASIVVMFYAPWCGHCKSMKPEFVDAAKQMTEEETAGKLAAVDCTKETKVCKKFDISGYPTVKYFENAEYKFKLNI--RKKDEIVKFMKNXXXXXXXXXXDLPWSEVSGPEILHLTDANFKDELKKKKHVLVMFYAPWCGHCXXXXXXXXXXXXTF--TEDRKVWFAGVDCTVDKKSCEQFGVSGYPTFRYFLYGKKDFKYEGGRNTDAFIEFMKNXXXXXXXXXXXXXXWKDTPSGVVHLGENDFDDFIKSHPSMLVMFYAPWCGHCKQMKPAYTEAANELLGTDH-AIAAVDCTK--NRKLASKYSISGYPTLKYFKDGQPSD-YDAGRDKDSIVSYLIQKTSGE 1909
++HL ++ F LK E +++MFYAPWC CK M P F AA Q+ + E + +++ + G+PT+ YFE + F+ + ++IV+++KNP+ P P + PW++ G + HLTD +F +K+ VLVMF+APWCGHCKK KPE EKAA D A VD TV+K E+F +S +PT +YF G+K + R F+E+M+NP+ E + V+HL ++F + +K LVMFYAPWC HCK++ P +T A+ A AAVDC K N+ L + ++ GYPT Y+ G+ ++ YD+ R + +Y+ G+
Sbjct: 153 VVHLDSEKDFRRLLKKEEKPLLIMFYAPWCSMCKRMMPHFQKAATQLRGHAVLAGMNVYSSEFEN-IKEEYSVRGFPTICYFEKGRFLFQYDNYGSTAEDIVEWLKNPQPPQPQVP-ETPWAD-EGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNGEK-YAVPVLRTKKKFLEWMQNPEAPPPPEPTWEE----QQTSVLHLVGDNFRETLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQEAVKGYPTFHYYHYGKFAEKYDSDRTELGFTNYIRALREGD 508 The following BLAST results are available for this feature:
BLAST of TCONS_00066946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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