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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066934 ID=TCONS_00066934|Name=TCONS_00066934|organism=Clytia hemisphaerica|type=transcript|length=2297bpRun BLAST on NCBI protein sequence of TCONS_00066934-protein >TCONS_00066934-protein ID=TCONS_00066934-protein|Name=TCONS_00066934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp MRNPDSEKTPLINKSGHHVYKLYTRRWFVLAVVALFNVTNAMIWITFAPVRun BLAST on NCBI transcript from alignment at scaffold_462:922335..928004+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066934 ID=TCONS_00066934|Name=TCONS_00066934|organism=Clytia hemisphaerica|type=transcript|length=5670bp|location=Sequence derived from alignment at scaffold_462:922335..928004+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_462:922335..928004+ >TCONS_00066934 ID=TCONS_00066934|Name=TCONS_00066934|organism=Clytia hemisphaerica|type=CDS|length=12906bp|location=Sequence derived from alignment at scaffold_462:922335..928004+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066934 vs. Swiss-Prot (Human)
Match: MFSD7 (Major facilitator superfamily domain-containing protein 7 OS=Homo sapiens GN=MFSD7 PE=2 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 2.556e-70 Identity = 163/467 (34.90%), Postives = 253/467 (54.18%), Query Frame = 3
Query: 726 SEKTPLINKSGHHVYKLYTRRWFVLAVVALFNVTNAMIWITFAPVTNFAASYFEISEKSVNYFSLVYFIASLPMGGISWWTIETYGFRFSVILGCIVNALGGVLRVVGAYSFHGHLRFTIVLVAQILSACVQPFVLSMPTKIAALWFGDHERTIANTIATMANPLGVLVANGIAAGIVSKEDDIGLLLIVTGAPAVITALLAIFGIWXXXXXXXXXXXALIEPVSFFV-GIK-TILKQKKFMLLALTSGMGIAAFSSISTIVQQLICPQGYSDTTAGILGALVIVGGFVGAGLSGYYVDNTRKYIDISKILGILFGFSGSLCLIAVNLRDMVAFNYIAFTLYGLTGLGVLPVFLELGVECTYPVDEATSSGIQWMIGQVIGAILFFIGLEASPKLSAADLADSTCKAEHDIDPLNFSTYAIVVTVLASSIGILFIMFFDTDYKRLQAERELDADITDQEPHPNTEDA 2120
+E L + GH + Y RRW L ++L N +NA +W++FAPV + A +S + +N+ SLVY + S P G + W +++ G R + ILG +N G VLR+V F ++ Q L A Q V+ P K+AALWF +H+R AN +ATM+NPLGVLVAN ++ +V K +DI L+L V PA + LL+ +W S PPTPPS A F+ G+K ++ K +++LA+ G I +S S +++Q++C G+S +G+ GAL I G +GA G YVD T+ + + +KI LF + + L+ +L GL G V PV +EL VEC++PV E ++G+ +++GQ G ++ + + S L STC + DPL+++ +++ L + + +FF T Y+RLQAE EP P+T +A
Sbjct: 12 AEPRALCAQRGH---RTYARRWVFLLAISLLNCSNATLWLSFAPVADVIAEDLVLSMEQINWLSLVYLVVSTPFGVAAIWILDSVGLRAATILGAWLNFAGSVLRMVPCMVVGTQNPFAFLMGGQSLCALAQSLVIFSPAKLAALWFPEHQRATANMLATMSNPLGVLVANVLSPVLVKKGEDIPLMLGVYTIPAGVVCLLSTICLWESVPPTPPSAGAASSTSEKFLDGLKLQLMWNKAYVILAVCLGGMIGISASFSALLEQILCASGHSSGFSGLCGALFITFGILGALALGPYVDRTKHFTEATKIGLCLFSLACVPFALVSQLQGQTLALAATCSLLGLFGFSVGPVAMELAVECSFPVGEGAATGMIFVLGQAEGILIMLAMTALTVRRSEPSL--STC--QQGEDPLDWTVSLLLMAGLCTFFSCILAVFFHTPYRRLQAE--------SGEP-PSTRNA 462 The following BLAST results are available for this feature:
BLAST of TCONS_00066934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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